jgi.p|Nanoce1779_2|84487, mRNA_6195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|84487
Unique NamemRNA_6195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length928
Alignment locationscaffold_14:772868..773795 +

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Properties
Property NameValue
TranscriptId84573
TrackFilteredModels2
ProteinId84487
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_14supercontigscaffold_14:772868..773795 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84487gene_6195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|84487mRNA_6195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6195CDS_6195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6195 ID=mRNA_6195|Name=jgi.p|Nanoce1779_2|84487|organism=Nannochloropsis oceanica|type=mRNA|length=928bp
GAGGGAGGGAGGGAGGGAGGGAGTCGTACAAACTGGAAATGTGGAAATGT
GCGATGAGGAAATGAGTGAGGAGCACAAAACCGTCTGCGGTGGCAAAAGG
AGAAAATTGGAAGAAGAAGAAGACAGAGGAGGATCCAAAGGGGGATGGTG
GTCAATGCATGATAGCCAAAGGGGGAATCCGAAGGTGAAAATGTGAAGAA
TTAAAAATTACAAGAACCCAAACAAGAGCAAAAGGTACGAGTGAGACGAC
CAAAATGAAGAAGGCTTACGACAAAGGCGATAAAGGAGAAATAAGAGACG
AGGGGGCCTTTAAAAATTGTACAGGATCATCTTGTCCTCCGTCCACGCGC
AATACAAACCTACAGGGACCCTCCAATCCCGCACGTATATTAGAGTATGT
GTGTGTGTGTGTCTATCTGTCTGTCTGTCTGTCTGTCTGGGCTGTCTTAA
TCGCTTTATTTCATTACCTTTTTCTTTTCTACCTATCGAATGGACACTCA
CCGACCGCTTGTCCTCCCTCACCATATCTTATCTCCTCTTCTTCTTCTTC
TTCCCCCCTCCTCCCCCCCCTCCTCCTCCCCCTCCACCTGACGTCGCCCC
TGACACAGACATTTCCTCCCCCTTCTCCTCCTTCTCCACCACCACCACTT
CCATCTCACTCACTCCATTTTCCCCTGTCCCTTTCCTCCCTCCCTCCTTC
TCTTTCATTAATCCCGTCATATTCCCCCCCAGTACCACTGCCAACGCTGC
CTGAAACGACTCCGCCTCCTCCCCTTCCTCCACCGTCGTCGATATCCGCT
TCTTGTCCGTGCGTGCCCTGATGAGGGTGTGGGTCTCGTCGCCTAGTGAC
ATGGCTTTTTCTAGCGCCTTTTGTCCACCGCGTACCGGGTGCTTTTTGAC
TGGACCGCAGAGTGGCGAGGGTGGGGTG
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protein sequence of jgi.p|Nanoce1779_2|84487

>mRNA_6195-protein ID=mRNA_6195-protein|Name=jgi.p|Nanoce1779_2|84487|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MKKAYDKGDKGEIRDEGAFKNCTGSSCPPSTRNTNLQGPSNPARILEYVC
VCVYLSVCLSVWAVLIALFHYLFLFYLSNGHSPTACPPSPYLISSSSSSS
PLLPPLLLPLHLTSPLTQTFPPPSPPSPPPPLPSHSLHFPLSLSSLPPSL
SLIPSYSPPVPLPTLPETTPPPPLPPPSSISASCPCVP*
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mRNA from alignment at scaffold_14:772868..773795+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6195 ID=mRNA_6195|Name=jgi.p|Nanoce1779_2|84487|organism=Nannochloropsis oceanica|type=mRNA|length=928bp|location=Sequence derived from alignment at scaffold_14:772868..773795+ (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGAGGGAGTCGTACAAACTGGAAATGTGGAAATGT
GCGATGAGGAAATGAGTGAGGAGCACAAAACCGTCTGCGGTGGCAAAAGG
AGAAAATTGGAAGAAGAAGAAGACAGAGGAGGATCCAAAGGGGGATGGTG
GTCAATGCATGATAGCCAAAGGGGGAATCCGAAGGTGAAAATGTGAAGAA
TTAAAAATTACAAGAACCCAAACAAGAGCAAAAGGTACGAGTGAGACGAC
CAAAATGAAGAAGGCTTACGACAAAGGCGATAAAGGAGAAATAAGAGACG
AGGGGGCCTTTAAAAATTGTACAGGATCATCTTGTCCTCCGTCCACGCGC
AATACAAACCTACAGGGACCCTCCAATCCCGCACGTATATTAGAGTATGT
GTGTGTGTGTGTCTATCTGTCTGTCTGTCTGTCTGTCTGGGCTGTCTTAA
TCGCTTTATTTCATTACCTTTTTCTTTTCTACCTATCGAATGGACACTCA
CCGACCGCTTGTCCTCCCTCACCATATCTTATCTCCTCTTCTTCTTCTTC
TTCCCCCCTCCTCCCCCCCCTCCTCCTCCCCCTCCACCTGACGTCGCCCC
TGACACAGACATTTCCTCCCCCTTCTCCTCCTTCTCCACCACCACCACTT
CCATCTCACTCACTCCATTTTCCCCTGTCCCTTTCCTCCCTCCCTCCTTC
TCTTTCATTAATCCCGTCATATTCCCCCCCAGTACCACTGCCAACGCTGC
CTGAAACGACTCCGCCTCCTCCCCTTCCTCCACCGTCGTCGATATCCGCT
TCTTGTCCGTGCGTGCCCTGATGAGGGTGTGGGTCTCGTCGCCTAGTGAC
ATGGCTTTTTCTAGCGCCTTTTGTCCACCGCGTACCGGGTGCTTTTTGAC
TGGACCGCAGAGTGGCGAGGGTGGGGTG
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Coding sequence (CDS) from alignment at scaffold_14:772868..773795+

>mRNA_6195 ID=mRNA_6195|Name=jgi.p|Nanoce1779_2|84487|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_14:772868..773795+ (Nannochloropsis oceanica)
ATGAAGAAGGCTTACGACAAAGGCGATAAAGGAGAAATAAGAGACGAGGG
GGCCTTTAAAAATTGTACAGGATCATCTTGTCCTCCGTCCACGCGCAATA
CAAACCTACAGGGACCCTCCAATCCCGCACGTATATTAGAGTATGTGTGT
GTGTGTGTCTATCTGTCTGTCTGTCTGTCTGTCTGGGCTGTCTTAATCGC
TTTATTTCATTACCTTTTTCTTTTCTACCTATCGAATGGACACTCACCGA
CCGCTTGTCCTCCCTCACCATATCTTATCTCCTCTTCTTCTTCTTCTTCC
CCCCTCCTCCCCCCCCTCCTCCTCCCCCTCCACCTGACGTCGCCCCTGAC
ACAGACATTTCCTCCCCCTTCTCCTCCTTCTCCACCACCACCACTTCCAT
CTCACTCACTCCATTTTCCCCTGTCCCTTTCCTCCCTCCCTCCTTCTCTT
TCATTAATCCCGTCATATTCCCCCCCAGTACCACTGCCAACGCTGCCTGA
AACGACTCCGCCTCCTCCCCTTCCTCCACCGTCGTCGATATCCGCTTCTT
GTCCGTGCGTGCCCTGA
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Synonyms
Publications