jgi.p|Nanoce1779_2|594611, mRNA_6329 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|594611
Unique NamemRNA_6329
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length660
Alignment locationscaffold_15:358894..359869 -

Link to JBrowse

Properties
Property NameValue
TranscriptId594697
TrackFilteredModels2
ProteinId594611
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:358894..359869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594611gene_6329Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|594611mRNA_6329-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6329CDS_6329Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6329 ID=mRNA_6329|Name=jgi.p|Nanoce1779_2|594611|organism=Nannochloropsis oceanica|type=mRNA|length=660bp
CAAAAGAGTATCACAGGCGAGGAACGGAGTGTGCAGCGGCGGTGGCGGTA
TCTAGTGTGTGTCGCAGCGGCAGACAAAATGAAATTCTGCCCCAACTGCA
ACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTATTTAC
TACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGACCCGTA
CGTTTTCCGCAACCAAGTCATCAAGACCCGCACAGTTAATCTCGACCACG
TTCTCTCCGCCGTGGCAAACGACCCAACTCTACAGCGCTCTACCGTCGAC
TGCCCTAAGTGCCACCATCATGAAGCCGTTTTGATTCAATCGACGCAGAA
TGTGAAGAGCAATAAATTGACACTTATCTTTGTGTGTTGCAACCCGAATT
GTGGGAATAAATGGACGGATGACGATGCACGGTGATGCAAAGGGAAGGAT
GGAAGGAGTAAGGGGAGGCTGGTGGGTGTATACAGGCAACAGTGAAAGGG
ACGCAGATGGAGAGGAAGAGGGGAAGAGGGAGAATCATTTATCTTTCCTT
TTCTTCTTTTGAGCGGAAGGAGAAGGACGGAGACGAGAAATACGTTATGA
GTTTGTAAACTAAATCAAACGCAAAATCTTGAGCAGGCATGAAGAAGACA
GACCACCATC
back to top

protein sequence of jgi.p|Nanoce1779_2|594611

>mRNA_6329-protein ID=mRNA_6329-protein|Name=jgi.p|Nanoce1779_2|594611|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MKFCPNCNFILYPKEDKDDRKLIYYCRSQRCDHEEDAPDPYVFRNQVIKT
RTVNLDHVLSAVANDPTLQRSTVDCPKCHHHEAVLIQSTQNVKSNKLTLI
FVCCNPNCGNKWTDDDAR*
back to top

mRNA from alignment at scaffold_15:358894..359869-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6329 ID=mRNA_6329|Name=jgi.p|Nanoce1779_2|594611|organism=Nannochloropsis oceanica|type=mRNA|length=976bp|location=Sequence derived from alignment at scaffold_15:358894..359869- (Nannochloropsis oceanica)
CAAAAGAGTATCACAGGCGAGGAACGGAGTGTGCAGCGGCGGTGGCGGTA
TCTAGTGTGTGTCGCAGCGGCAGACAAAATGAAATTCTGCCCCAACTGGT
AAATTTCGCTGCATCATGCCTCCCCCACCTGCTCCTCTCTCCCTACCGCG
GCATCTTACTCACCTACCCATCCTCCTTATATACAATCTCCGCGCTTCCT
CAGCAACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTA
TTTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGAC
CCGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCACGTAAGCATTGTG
TGTCTGTCTATCTAGTGTCTATGTGTGCTGCGCAAGCAATGTGTGTCTGT
CCTATATATTGTCTATGTTTGCTAGCCTTTGGTTACATTGCGTGTGTCTC
ACTCTCTTATGTTGCTTCTCGGCTATTGGCATCGTGCGTATGCTGTTTTC
GTCTTCGATATCTCACGGTAGTCCTCTCATTTTCCCCTCCCTCGCTCAGA
GTTAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCAACTCTACA
GCGCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGCCGTTTTGA
TTCAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTATCTTTGTG
TGTTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGATGCACGGTG
ATGCAAAGGGAAGGATGGAAGGAGTAAGGGGAGGCTGGTGGGTGTATACA
GGCAACAGTGAAAGGGACGCAGATGGAGAGGAAGAGGGGAAGAGGGAGAA
TCATTTATCTTTCCTTTTCTTCTTTTGAGCGGAAGGAGAAGGACGGAGAC
GAGAAATACGTTATGAGTTTGTAAACTAAATCAAACGCAAAATCTTGAGC
AGGCATGAAGAAGACAGACCACCATC
back to top

Coding sequence (CDS) from alignment at scaffold_15:358894..359869-

>mRNA_6329 ID=mRNA_6329|Name=jgi.p|Nanoce1779_2|594611|organism=Nannochloropsis oceanica|type=CDS|length=1071bp|location=Sequence derived from alignment at scaffold_15:358894..359869- (Nannochloropsis oceanica)
AGTTAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCAACTCTAC
AGCGCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGCCGTTTTG
ATTCAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTATCTTTGT
GTGTTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGATGCACGGT
GACAACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGAAGCTTAT
TTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCCCCGGACC
CGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCACATGAAATTCTGCC
CCAACTGAGTTAATCTCGACCACGTTCTCTCCGCCGTGGCAAACGACCCA
ACTCTACAGCGCTCTACCGTCGACTGCCCTAAGTGCCACCATCATGAAGC
CGTTTTGATTCAATCGACGCAGAATGTGAAGAGCAATAAATTGACACTTA
TCTTTGTGTGTTGCAACCCGAATTGTGGGAATAAATGGACGGATGACGAT
GCACGGTGACAACTTTATTCTGTACCCGAAGGAGGACAAGGACGACCGGA
AGCTTATTTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGAGGATGCC
CCGGACCCGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCACATGAAA
TTCTGCCCCAACTGAGTTAATCTCGACCACGTTCTCTCCGCCGTGGCAAA
CGACCCAACTCTACAGCGCTCTACCGTCGACTGCCCTAAGTGCCACCATC
ATGAAGCCGTTTTGATTCAATCGACGCAGAATGTGAAGAGCAATAAATTG
ACACTTATCTTTGTGTGTTGCAACCCGAATTGTGGGAATAAATGGACGGA
TGACGATGCACGGTGACAACTTTATTCTGTACCCGAAGGAGGACAAGGAC
GACCGGAAGCTTATTTACTACTGTCGGTCCCAGCGGTGCGACCACGAGGA
GGATGCCCCGGACCCGTACGTTTTCCGCAACCAAGTCATCAAGACCCGCA
CATGAAATTCTGCCCCAACTG
back to top
Synonyms
Publications