jgi.p|Nanoce1779_2|595260, mRNA_7008 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595260
Unique NamemRNA_7008
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length593
Alignment locationscaffold_16:32005..33198 -

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Properties
Property NameValue
TranscriptId595346
TrackFilteredModels2
ProteinId595260
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:32005..33198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595260gene_7008Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595260mRNA_7008-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7008CDS_7008Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7008 ID=mRNA_7008|Name=jgi.p|Nanoce1779_2|595260|organism=Nannochloropsis oceanica|type=mRNA|length=593bp
ACAGACTCAGCAGCACTCAGTACCTTACTAGACAAGCAAATCCAACATGG
ACGCTCTCAAGGCCGCATTCGGAAAAGAGATTCAGAAGCAGGCAAACAAG
GTCCTTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATACC
TGGGGCCTTGAAGGAGGAAGAACGCCCGTCCGTGGTGCCGTTTCAGAGTG
ACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCATCAACTATTTCAAA
TCTAAAGCCGAGCTCTTTGGCTGCATAAATGATGTAAAGAACGTAAAGTC
GTTCATTATCCAGAACTATGGCTTTGTTCAGGAGAACATTAAGACCTTTA
CGGACGAGCCTGGTTCGGGAAATGAAATGCCAACGCGGGCGAACATCATC
AATGCGTTGAAGTGGCTGGCAAGTGGGGCGACTTCTGGAGACTCCCTCTT
CTTCCACTACTCGGGGCACGGAGGCACGGCGCGCGACTTGGGTGGGTAGC
CATGTCAAGAATAGTAGTAGCAGCAGTAGCAGCATTAGGAGTAGTAGCTG
TTCTTTTTCTTGTTCTTGTTCTTCTTGTTGTTGTGGGAGGAGG
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protein sequence of jgi.p|Nanoce1779_2|595260

>mRNA_7008-protein ID=mRNA_7008-protein|Name=jgi.p|Nanoce1779_2|595260|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MDALKAAFGKEIQKQANKVLGDVMNKVSGSDIKIPGALKEEERPSVVPFQ
SDCSGRKKAVFVGINYFKSKAELFGCINDVKNVKSFIIQNYGFVQENIKT
FTDEPGSGNEMPTRANIINALKWLASGATSGDSLFFHYSGHGGTARDLGG
*
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mRNA from alignment at scaffold_16:32005..33198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7008 ID=mRNA_7008|Name=jgi.p|Nanoce1779_2|595260|organism=Nannochloropsis oceanica|type=mRNA|length=1194bp|location=Sequence derived from alignment at scaffold_16:32005..33198- (Nannochloropsis oceanica)
ACAGACTCAGCAGCACTCAGTACCTTACTAGACAAGCAAATCCAACATGG
ACGCTCTCAAGGCCGCATTCGGAAAAGAGATTCAGAAGCAGGTACGGCTG
AAGAGAAGTGGAAGGGAGAAAGGGGCCTGAGGGGGACTGACCATCATCCT
TGCCCTATGGCTGAACCTTCACTACTACATCACACAGGCAAACAAGGTCC
TTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATACCTGGG
GCCTTGAAGGAGGTGCGTAGGTCTCTCTTCCCGTCATCCACCATACCGCT
TTCAAAAATGCTGCACACTGCATCGGTACGCACAGGAAGAACGCCCGTCC
GTGGTGCCGTTTCAGAGTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGT
CGGTACGCAATGCAGCTGGGTCTTGTTACCTTTGAGGGGAGAAGGAGGGT
GCAAGACGACACAATGTTTGCTTTCTTTTTCCCTTCCATTCATTCAATCA
TATACTCCCTTCACTTTTTCATTACTTATGCCATGTGAAATTTAGGCATC
AACTATTTCAAATCTAAAGCCGAGCTCTTTGGCTGCATAAATGATGTAAA
GAACGTAAAGGTATGTGTGGCCTGGTGTCCCTGGACGCTTAAAAGGATAA
AGTTAAAGACCCTCCCTCCCTCCCTTCCACCCTTCCTCCCTCCCTTCTTC
CTCCCTTTTCCTAGTCGTTCATTATCCAGAACTATGGCTTTGTTCAGGAG
AACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGAAATGCCAAC
GCGGGTAAGAAACCAAAAAAAGGAAGGAAAAGTACAATACAAGAAGGGAA
GGAAAGAGGAAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAA
AATAACGGGCGTCTTTCTTCATGCGCAAGCCCGTGCTCTTCATTCACCAA
GCACAATTTCGCATCCTGTGCGTTTGAATTTTCAAAAAGGCGAACATCAT
CAATGCGTTGAAGTGGCTGGCAAGTGGGGCGACTTCTGGAGACTCCCTCT
TCTTCCACTACTCGGGGCACGGAGGCACGGCGCGCGACTTGGGTGGGTAG
CCATGTCAAGAATAGTAGTAGCAGCAGTAGCAGCATTAGGAGTAGTAGCT
GTTCTTTTTCTTGTTCTTGTTCTTCTTGTTGTTGTGGGAGGAGG
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Coding sequence (CDS) from alignment at scaffold_16:32005..33198-

>mRNA_7008 ID=mRNA_7008|Name=jgi.p|Nanoce1779_2|595260|organism=Nannochloropsis oceanica|type=CDS|length=2718bp|location=Sequence derived from alignment at scaffold_16:32005..33198- (Nannochloropsis oceanica)
GCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGCGACTTCTGG
AGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGGCGCGCGACT
TGGGTGGGTAGTCGTTCATTATCCAGAACTATGGCTTTGTTCAGGAGAAC
ATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGAAATGCCAACGCG
GGCATCAACTATTTCAAATCTAAAGCCGAGCTCTTTGGCTGCATAAATGA
TGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGGTGCCGTTTCAGAGTG
ACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCAAACAAGGTCCTTGG
CGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATACCTGGGGCCT
TGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGAAAAGAGATTCAGAAG
CAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGCGACTTC
TGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGGCGCGCG
ACTTGGGTGGGTAGTCGTTCATTATCCAGAACTATGGCTTTGTTCAGGAG
AACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGAAATGCCAAC
GCGGGCATCAACTATTTCAAATCTAAAGCCGAGCTCTTTGGCTGCATAAA
TGATGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGGTGCCGTTTCAGA
GTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCAAACAAGGTCCT
TGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATACCTGGGG
CCTTGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGAAAAGAGATTCAG
AAGCAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGCGAC
TTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGGCGC
GCGACTTGGGTGGGTAGTCGTTCATTATCCAGAACTATGGCTTTGTTCAG
GAGAACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGAAATGCC
AACGCGGGCATCAACTATTTCAAATCTAAAGCCGAGCTCTTTGGCTGCAT
AAATGATGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGGTGCCGTTTC
AGAGTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCAAACAAGGT
CCTTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATACCTG
GGGCCTTGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGAAAAGAGATT
CAGAAGCAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGGGGC
GACTTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCACGG
CGCGCGACTTGGGTGGGTAGTCGTTCATTATCCAGAACTATGGCTTTGTT
CAGGAGAACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGAAAT
GCCAACGCGGGCATCAACTATTTCAAATCTAAAGCCGAGCTCTTTGGCTG
CATAAATGATGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGGTGCCGT
TTCAGAGTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCAAACAA
GGTCCTTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAATAC
CTGGGGCCTTGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGAAAAGAG
ATTCAGAAGCAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAGTGG
GGCGACTTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAGGCA
CGGCGCGCGACTTGGGTGGGTAGTCGTTCATTATCCAGAACTATGGCTTT
GTTCAGGAGAACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAATGA
AATGCCAACGCGGGCATCAACTATTTCAAATCTAAAGCCGAGCTCTTTGG
CTGCATAAATGATGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGGTGC
CGTTTCAGAGTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGCAAA
CAAGGTCCTTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTAAAA
TACCTGGGGCCTTGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGAAAA
GAGATTCAGAAGCAGGCGAACATCATCAATGCGTTGAAGTGGCTGGCAAG
TGGGGCGACTTCTGGAGACTCCCTCTTCTTCCACTACTCGGGGCACGGAG
GCACGGCGCGCGACTTGGGTGGGTAGTCGTTCATTATCCAGAACTATGGC
TTTGTTCAGGAGAACATTAAGACCTTTACGGACGAGCCTGGTTCGGGAAA
TGAAATGCCAACGCGGGCATCAACTATTTCAAATCTAAAGCCGAGCTCTT
TGGCTGCATAAATGATGTAAAGAACGTAAAGGAAGAACGCCCGTCCGTGG
TGCCGTTTCAGAGTGACTGCTCTGGTAGGAAGAAGGCCGTCTTTGTCGGC
AAACAAGGTCCTTGGCGACGTGATGAACAAAGTGTCCGGAAGCGACATTA
AAATACCTGGGGCCTTGAAGGAGATGGACGCTCTCAAGGCCGCATTCGGA
AAAGAGATTCAGAAGCAG
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Synonyms
Publications