jgi.p|Nanoce1779_2|595500, mRNA_7069 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|595500
Unique Name	mRNA_7069
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	987
Alignment location	scaffold_16:220457..221443 -

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Properties


Property Name	Value
TranscriptId	595586
Track	FilteredModels2
ProteinId	595500

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:220457..221443 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595500	gene_7069	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|595500	mRNA_7069-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7069	CDS_7069	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_16:220457..221443-
coding sequence from alignment at scaffold_16:220457..221443-

mRNA sequence

>mRNA_7069 ID=mRNA_7069|Name=jgi.p|Nanoce1779_2|595500|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ACCGAGAGAGCTACAAGGGAGAGGGCCAGTCCTGGAATGGTCAGAGGAGA
GCAAGGAGGAGGAGCAGCAGCAGCAGGAGTAGCAGCAGCAGCAGTAGCAC
TGTTACTGCAGCTGCTGCGGCTGCGTCGGTCGGAGCTGCTATTGCTAGTG
GTGGTGGTTTTACTCATTCTGCATCTGTAACGCGTACCGTTGTCGTTGCT
GCTGTTACTGCCACTACCCGCCTTGCTGTCCTCTTTCACTGCAGTTGCAG
CAGTTGGAGTGCCCTTAGCCACCGACAGAGCAAAGGCAAAATTATTACAG
CTACTGCTAGTGCTGCTGTTGCTGCTGCCGCTGCTGCTGCCGCTGCTGGC
CCCACTTCGAGTTCGAATTGGAGAAGGAGGAAAAGGAGGAGGGGTGAAGG
CGGAGGGGAAGGGGGTGGGGGCTAGCGAGGGAGGAAGGGAGGGTGGAACG
ATACTACTGCTTCTGTTCGTCTCGTTCACGTTTTTCCTACTGGACGAAGA
AGCTCGTACCCTTTCAGGCGGCATCTCCAGGAGGGAGGGAGGGACGGAGG
AAGGGAAAGAGGCAGAGGCTGGTAAGAAGGAGGAGGCTAGAAAAGCCTGT
GGTGGGGGTAGACGCAGGGCGTGTGCTAAACTCCCTCGTCGGATCCTCGC
CTGCGCTGGATCGGGTTCCCATGACCCTCCATTTTTTCGCCCATCCATTC
CTTTTCCTTCATCCCATCCTGCTCCTTCCTCTGCCTTTTCCTTCTCCTTC
TCCTCCACTTTATGTGCTATCGCGTCTGCTGCTCCTGCTCCTGCTACTCC
TGCTCCTCGTCCTCCGCCACTCCCATAATTCCGTTGAAGCCTCGCCGCAC
ATTTCCTCTGAAGCCTCCCCTCTTCTTCCACTTCCTCCGCCTTCCCATCC
CGTGCTTCTTCCTCTTCTTCCTCATCCTCTTGCAAATCAAGTAAGGGCGT
GACTAATGCACCAGAAGCCTCCCCTCGACGTGAGGGG

protein sequence of jgi.p|Nanoce1779_2|595500

>mRNA_7069-protein ID=mRNA_7069-protein|Name=jgi.p|Nanoce1779_2|595500|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MTLHFFAHPFLFLHPILLLPLPFPSPSPPLYVLSRLLLLLLLLLLLVLRH
SHNSVEASPHISSEASPLLPLPPPSHPVLLPLLPHPLANQVRA*

mRNA from alignment at scaffold_16:220457..221443-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7069 ID=mRNA_7069|Name=jgi.p|Nanoce1779_2|595500|organism=Nannochloropsis oceanica|type=mRNA|length=987bp|location=Sequence derived from alignment at scaffold_16:220457..221443- (Nannochloropsis oceanica)
ACCGAGAGAGCTACAAGGGAGAGGGCCAGTCCTGGAATGGTCAGAGGAGA
GCAAGGAGGAGGAGCAGCAGCAGCAGGAGTAGCAGCAGCAGCAGTAGCAC
TGTTACTGCAGCTGCTGCGGCTGCGTCGGTCGGAGCTGCTATTGCTAGTG
GTGGTGGTTTTACTCATTCTGCATCTGTAACGCGTACCGTTGTCGTTGCT
GCTGTTACTGCCACTACCCGCCTTGCTGTCCTCTTTCACTGCAGTTGCAG
CAGTTGGAGTGCCCTTAGCCACCGACAGAGCAAAGGCAAAATTATTACAG
CTACTGCTAGTGCTGCTGTTGCTGCTGCCGCTGCTGCTGCCGCTGCTGGC
CCCACTTCGAGTTCGAATTGGAGAAGGAGGAAAAGGAGGAGGGGTGAAGG
CGGAGGGGAAGGGGGTGGGGGCTAGCGAGGGAGGAAGGGAGGGTGGAACG
ATACTACTGCTTCTGTTCGTCTCGTTCACGTTTTTCCTACTGGACGAAGA
AGCTCGTACCCTTTCAGGCGGCATCTCCAGGAGGGAGGGAGGGACGGAGG
AAGGGAAAGAGGCAGAGGCTGGTAAGAAGGAGGAGGCTAGAAAAGCCTGT
GGTGGGGGTAGACGCAGGGCGTGTGCTAAACTCCCTCGTCGGATCCTCGC
CTGCGCTGGATCGGGTTCCCATGACCCTCCATTTTTTCGCCCATCCATTC
CTTTTCCTTCATCCCATCCTGCTCCTTCCTCTGCCTTTTCCTTCTCCTTC
TCCTCCACTTTATGTGCTATCGCGTCTGCTGCTCCTGCTCCTGCTACTCC
TGCTCCTCGTCCTCCGCCACTCCCATAATTCCGTTGAAGCCTCGCCGCAC
ATTTCCTCTGAAGCCTCCCCTCTTCTTCCACTTCCTCCGCCTTCCCATCC
CGTGCTTCTTCCTCTTCTTCCTCATCCTCTTGCAAATCAAGTAAGGGCGT
GACTAATGCACCAGAAGCCTCCCCTCGACGTGAGGGG

Coding sequence (CDS) from alignment at scaffold_16:220457..221443-

>mRNA_7069 ID=mRNA_7069|Name=jgi.p|Nanoce1779_2|595500|organism=Nannochloropsis oceanica|type=CDS|length=282bp|location=Sequence derived from alignment at scaffold_16:220457..221443- (Nannochloropsis oceanica)
ATGACCCTCCATTTTTTCGCCCATCCATTCCTTTTCCTTCATCCCATCCT
GCTCCTTCCTCTGCCTTTTCCTTCTCCTTCTCCTCCACTTTATGTGCTAT
CGCGTCTGCTGCTCCTGCTCCTGCTACTCCTGCTCCTCGTCCTCCGCCAC
TCCCATAATTCCGTTGAAGCCTCGCCGCACATTTCCTCTGAAGCCTCCCC
TCTTCTTCCACTTCCTCCGCCTTCCCATCCCGTGCTTCTTCCTCTTCTTC
CTCATCCTCTTGCAAATCAAGTAAGGGCGTGA

Synonyms

Publications