jgi.p|Nanoce1779_2|595730, mRNA_7135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|595730
Unique NamemRNA_7135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2120
Alignment locationscaffold_16:376581..378700 -

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Properties
Property NameValue
TranscriptId595816
TrackFilteredModels2
ProteinId595730
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:376581..378700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595730gene_7135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|595730mRNA_7135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_7135CDS_7135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_7135 ID=mRNA_7135|Name=jgi.p|Nanoce1779_2|595730|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp
ACAGGTGGGGGGAAATGCAGCACTTCCTCCTAGGGAACAGCGGCACCAGG
AGAACGGCGGCAACTAATGGGGCACCTCGGTGGCCCAGAATACCTCCCCC
CTGGCAATTAGCCCTCTTGTTGGTGGTGAGTCTTGGCCTCCGTTGTTGAA
GGGTGGAGTAAGAGAGTGTATCGGGCTCCTGGATGTCTTGCGCCAGGAAG
ATGTTGGTTTTCGGTTTTGAGAGTGTGGGGGAAATGGCTTTAATATTCTT
TCATGTCAAACTGCGCCCTTGCGACTCATCTTCCCTTGCTGCCTATGAGC
AGCCACACCCTCCATAGCTTGAGCATGGGACTTTTGGTCACGGATTATTA
GGCCTACTGTGTTGGGTGCATCGCCCATTATCTTGGTCTACTGACCCGCC
TCTCAAGCACCACCATGCCTCCCTCATCCTCCCTTCAAAAACAGGCCCTG
TTCATCGGTGGCCTGCAGCGCACCTTGTCGTTTGCGCCGTCGTTGCTGAG
GGCATGCGACGCACAATTATCAGCCTTTACACCCTCATCACCACCCACGG
TACCTAGCAGCATAGCGGGTAGCATTTTCCGTTCGCCTTCGCTCTTGCAA
ACTTCGCATTTCAAGTTCTTCCACACGGACATGGACCTGAGCCTCATGAG
CGCCGCTCGGTCCGACTCGGCCCTCTCCGATCCTGAGGTTATGGAGGGAA
ATCTGCAAGAATGGATTATTCACAGTGAACACGTCCGCAAGAAGCGATTT
CAAATCATTGCTGCGCCTGTCTGCGAGCCCATGGCCCGCCGTCTCCAAGC
CAAGCACCCTGAGCGCTTCCGGTTCCACCCCACGCACTGGGGCAAGTTCC
CCGACGGTACGGACAACATCGAAGTGGGCGGCTTCCAACCCCACAATGTC
ATGGCAGGAGAGCACATTCTGCTGCTGGCCTCCTTTCACAACAATGACGT
GACCCTCTCCCAGTTCCAGGTGATGGTGATGCTCCTACAAAGCTTCATCA
AGTCCTTGACAATCGTCCTTCCCTTCTATCCCGTCGGGACCATGGAACGT
GTGGTCAAGGAAGGCCAGGTCGCAACTGCCAACACCTATGCCCAAATGTT
TTCCAATCTCCCTTCCTGCGGCCGGCCCACACGCCTCCTGATTTACGACT
TGCACACCCTCCAAAACCGCTTCTACCTACACGGGAACTCCATGGCCAGC
CTCCAAACCACCATCCCCATTCTCTTCGACGAGATCCGGCGGGCGGGCGT
GGATTGCATTGCCTTTCCGGATGATGGTGCGTCGAAGCGCTTCGCTCACA
TGTTTGCGCCGCTGCAGTTGGAGATGGTAACGTGCGGTAAAACCCGCGAC
GGGGACAAGCGCGTCATCACAGTGCAAGACGGCAACCCCGACGGGAAAAA
GGTTTTGATCGTTGACGATCTGGTCCAGACAGGAGGCACTCTTTACGAGT
GTGGCGTCGCCCTGAAGGCCTTGGGTGCCGCTTCTGTGTCTGCTTTTGTA
GCTCATTCTGTCTTTCCTAACGATTCTTGGAAAAGGTTTGCTCGTGGTGG
AGACCGGGGCGTTTTTGAGAAGTTTTGGACGACCAATTCTATTCCCACCG
TCACGAATAATTTGCCGGAAGGCGATGTCTTTGTGGTCCTGGATCTCCTT
GACAAGATAGTCTATGACCTAGACTTCCATTAATTTAAATGACCGTTACA
GCAGTGGGAAATACTAAAATAAGAGCATTAGCAGGCGAATCCGTGAGGGG
TTGAGTTCGGCTTTTGGGGCAAGACCGTGCCATACCATGGTAACGAGAAG
CGTGACTGCGGGGCTTCCCTATTCGTGAGAAAAATATACTTCGCTGTCTC
CTTAGGAAAGAGAATCGTCAAACATACTTGTATCATTTATTTCACATAGA
GACAGAGAGAAGAGGACGGGAAGGCATGTTTGGGGAAGAGCTAAGCAGCC
CTCCTGTGCCGCAAAGAGCGACTACATCGTCTTGCTGGGATTCACTCCTG
GGAATGGAGATAGGGACGGACGAGCAAAAGTATGAAAGTCCTTTAAAACC
AACATACCCGGTATTGGCACATCAAAAAAAGCAACCACGAGAAAGCAAAT
GAAAGAGTCCAATTGCTGAT
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protein sequence of jgi.p|Nanoce1779_2|595730

>mRNA_7135-protein ID=mRNA_7135-protein|Name=jgi.p|Nanoce1779_2|595730|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MPPSSSLQKQALFIGGLQRTLSFAPSLLRACDAQLSAFTPSSPPTVPSSI
AGSIFRSPSLLQTSHFKFFHTDMDLSLMSAARSDSALSDPEVMEGNLQEW
IIHSEHVRKKRFQIIAAPVCEPMARRLQAKHPERFRFHPTHWGKFPDGTD
NIEVGGFQPHNVMAGEHILLLASFHNNDVTLSQFQVMVMLLQSFIKSLTI
VLPFYPVGTMERVVKEGQVATANTYAQMFSNLPSCGRPTRLLIYDLHTLQ
NRFYLHGNSMASLQTTIPILFDEIRRAGVDCIAFPDDGASKRFAHMFAPL
QLEMVTCGKTRDGDKRVITVQDGNPDGKKVLIVDDLVQTGGTLYECGVAL
KALGAASVSAFVAHSVFPNDSWKRFARGGDRGVFEKFWTTNSIPTVTNNL
PEGDVFVVLDLLDKIVYDLDFH*
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mRNA from alignment at scaffold_16:376581..378700-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7135 ID=mRNA_7135|Name=jgi.p|Nanoce1779_2|595730|organism=Nannochloropsis oceanica|type=mRNA|length=2120bp|location=Sequence derived from alignment at scaffold_16:376581..378700- (Nannochloropsis oceanica)
ACAGGTGGGGGGAAATGCAGCACTTCCTCCTAGGGAACAGCGGCACCAGG
AGAACGGCGGCAACTAATGGGGCACCTCGGTGGCCCAGAATACCTCCCCC
CTGGCAATTAGCCCTCTTGTTGGTGGTGAGTCTTGGCCTCCGTTGTTGAA
GGGTGGAGTAAGAGAGTGTATCGGGCTCCTGGATGTCTTGCGCCAGGAAG
ATGTTGGTTTTCGGTTTTGAGAGTGTGGGGGAAATGGCTTTAATATTCTT
TCATGTCAAACTGCGCCCTTGCGACTCATCTTCCCTTGCTGCCTATGAGC
AGCCACACCCTCCATAGCTTGAGCATGGGACTTTTGGTCACGGATTATTA
GGCCTACTGTGTTGGGTGCATCGCCCATTATCTTGGTCTACTGACCCGCC
TCTCAAGCACCACCATGCCTCCCTCATCCTCCCTTCAAAAACAGGCCCTG
TTCATCGGTGGCCTGCAGCGCACCTTGTCGTTTGCGCCGTCGTTGCTGAG
GGCATGCGACGCACAATTATCAGCCTTTACACCCTCATCACCACCCACGG
TACCTAGCAGCATAGCGGGTAGCATTTTCCGTTCGCCTTCGCTCTTGCAA
ACTTCGCATTTCAAGTTCTTCCACACGGACATGGACCTGAGCCTCATGAG
CGCCGCTCGGTCCGACTCGGCCCTCTCCGATCCTGAGGTTATGGAGGGAA
ATCTGCAAGAATGGATTATTCACAGTGAACACGTCCGCAAGAAGCGATTT
CAAATCATTGCTGCGCCTGTCTGCGAGCCCATGGCCCGCCGTCTCCAAGC
CAAGCACCCTGAGCGCTTCCGGTTCCACCCCACGCACTGGGGCAAGTTCC
CCGACGGTACGGACAACATCGAAGTGGGCGGCTTCCAACCCCACAATGTC
ATGGCAGGAGAGCACATTCTGCTGCTGGCCTCCTTTCACAACAATGACGT
GACCCTCTCCCAGTTCCAGGTGATGGTGATGCTCCTACAAAGCTTCATCA
AGTCCTTGACAATCGTCCTTCCCTTCTATCCCGTCGGGACCATGGAACGT
GTGGTCAAGGAAGGCCAGGTCGCAACTGCCAACACCTATGCCCAAATGTT
TTCCAATCTCCCTTCCTGCGGCCGGCCCACACGCCTCCTGATTTACGACT
TGCACACCCTCCAAAACCGCTTCTACCTACACGGGAACTCCATGGCCAGC
CTCCAAACCACCATCCCCATTCTCTTCGACGAGATCCGGCGGGCGGGCGT
GGATTGCATTGCCTTTCCGGATGATGGTGCGTCGAAGCGCTTCGCTCACA
TGTTTGCGCCGCTGCAGTTGGAGATGGTAACGTGCGGTAAAACCCGCGAC
GGGGACAAGCGCGTCATCACAGTGCAAGACGGCAACCCCGACGGGAAAAA
GGTTTTGATCGTTGACGATCTGGTCCAGACAGGAGGCACTCTTTACGAGT
GTGGCGTCGCCCTGAAGGCCTTGGGTGCCGCTTCTGTGTCTGCTTTTGTA
GCTCATTCTGTCTTTCCTAACGATTCTTGGAAAAGGTTTGCTCGTGGTGG
AGACCGGGGCGTTTTTGAGAAGTTTTGGACGACCAATTCTATTCCCACCG
TCACGAATAATTTGCCGGAAGGCGATGTCTTTGTGGTCCTGGATCTCCTT
GACAAGATAGTCTATGACCTAGACTTCCATTAATTTAAATGACCGTTACA
GCAGTGGGAAATACTAAAATAAGAGCATTAGCAGGCGAATCCGTGAGGGG
TTGAGTTCGGCTTTTGGGGCAAGACCGTGCCATACCATGGTAACGAGAAG
CGTGACTGCGGGGCTTCCCTATTCGTGAGAAAAATATACTTCGCTGTCTC
CTTAGGAAAGAGAATCGTCAAACATACTTGTATCATTTATTTCACATAGA
GACAGAGAGAAGAGGACGGGAAGGCATGTTTGGGGAAGAGCTAAGCAGCC
CTCCTGTGCCGCAAAGAGCGACTACATCGTCTTGCTGGGATTCACTCCTG
GGAATGGAGATAGGGACGGACGAGCAAAAGTATGAAAGTCCTTTAAAACC
AACATACCCGGTATTGGCACATCAAAAAAAGCAACCACGAGAAAGCAAAT
GAAAGAGTCCAATTGCTGAT
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Coding sequence (CDS) from alignment at scaffold_16:376581..378700-

>mRNA_7135 ID=mRNA_7135|Name=jgi.p|Nanoce1779_2|595730|organism=Nannochloropsis oceanica|type=CDS|length=1269bp|location=Sequence derived from alignment at scaffold_16:376581..378700- (Nannochloropsis oceanica)
ATGCCTCCCTCATCCTCCCTTCAAAAACAGGCCCTGTTCATCGGTGGCCT
GCAGCGCACCTTGTCGTTTGCGCCGTCGTTGCTGAGGGCATGCGACGCAC
AATTATCAGCCTTTACACCCTCATCACCACCCACGGTACCTAGCAGCATA
GCGGGTAGCATTTTCCGTTCGCCTTCGCTCTTGCAAACTTCGCATTTCAA
GTTCTTCCACACGGACATGGACCTGAGCCTCATGAGCGCCGCTCGGTCCG
ACTCGGCCCTCTCCGATCCTGAGGTTATGGAGGGAAATCTGCAAGAATGG
ATTATTCACAGTGAACACGTCCGCAAGAAGCGATTTCAAATCATTGCTGC
GCCTGTCTGCGAGCCCATGGCCCGCCGTCTCCAAGCCAAGCACCCTGAGC
GCTTCCGGTTCCACCCCACGCACTGGGGCAAGTTCCCCGACGGTACGGAC
AACATCGAAGTGGGCGGCTTCCAACCCCACAATGTCATGGCAGGAGAGCA
CATTCTGCTGCTGGCCTCCTTTCACAACAATGACGTGACCCTCTCCCAGT
TCCAGGTGATGGTGATGCTCCTACAAAGCTTCATCAAGTCCTTGACAATC
GTCCTTCCCTTCTATCCCGTCGGGACCATGGAACGTGTGGTCAAGGAAGG
CCAGGTCGCAACTGCCAACACCTATGCCCAAATGTTTTCCAATCTCCCTT
CCTGCGGCCGGCCCACACGCCTCCTGATTTACGACTTGCACACCCTCCAA
AACCGCTTCTACCTACACGGGAACTCCATGGCCAGCCTCCAAACCACCAT
CCCCATTCTCTTCGACGAGATCCGGCGGGCGGGCGTGGATTGCATTGCCT
TTCCGGATGATGGTGCGTCGAAGCGCTTCGCTCACATGTTTGCGCCGCTG
CAGTTGGAGATGGTAACGTGCGGTAAAACCCGCGACGGGGACAAGCGCGT
CATCACAGTGCAAGACGGCAACCCCGACGGGAAAAAGGTTTTGATCGTTG
ACGATCTGGTCCAGACAGGAGGCACTCTTTACGAGTGTGGCGTCGCCCTG
AAGGCCTTGGGTGCCGCTTCTGTGTCTGCTTTTGTAGCTCATTCTGTCTT
TCCTAACGATTCTTGGAAAAGGTTTGCTCGTGGTGGAGACCGGGGCGTTT
TTGAGAAGTTTTGGACGACCAATTCTATTCCCACCGTCACGAATAATTTG
CCGGAAGGCGATGTCTTTGTGGTCCTGGATCTCCTTGACAAGATAGTCTA
TGACCTAGACTTCCATTAA
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Synonyms
Publications