jgi.p|Nanoce1779_2|596369, mRNA_6803 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596369
Unique NamemRNA_6803
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1214
Alignment locationscaffold_17:134814..136027 -

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Properties
Property NameValue
TranscriptId596455
TrackFilteredModels2
ProteinId596369
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:134814..136027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596369gene_6803Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596369mRNA_6803-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6803CDS_6803Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6803 ID=mRNA_6803|Name=jgi.p|Nanoce1779_2|596369|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp
CAGGTAGACACATGCAAGACACTGCGCCAAATTTCAAACCTCTCCTCTCC
TTTGGCTTTCGCAAGAAGTCCCCTGCCCAAAAACCAGTGAATGCCGTCGC
CTCTATCTTTGTCCAACAAAACGGCAACGACGATGATGTGGATGTGGAGG
ATACAGTGGTGAAGACCTTGAGCTTGCAGGCCGTCGCTGTCGAGAAAATC
GTATCTCTGCCTTCCTCCCCACCTGGGAATGCCAGCTCAAAGCAAGCCAA
GGTGGACGCGCTTCGGGAAGCTGGGAATGCAAGGGCCGACGCCGGTAACA
TGAGACAGGCGTTGACCCTTTTTGAAGAGGCAATCAGTTTGGCCCCGACC
AGCAGTATTTTATTTGAACTCAAGTCTCAATGTCACCTCTCATTGGAGGA
ATACCTCGAAGCGGTGCGCGCCGCCAGGCGAGCGGTGGATCTCGCGCCGG
AATGGAGTGAGGGGGCCTTGACTTTGGGTCGATCGCTTTTATCGTTGGGT
GAAGTGCGAGCAGCAGTAACAGTACTAAGCGAGGTATTAGGAAGGGATGG
CTGCAACGAGGAAATACGCGAGGAGTTGATCTATGCAAACAACGCCTTGA
TGGAACTGAGGCGACGGGAGGCGGATTTCGATTTACAATTAAACGGGAGG
GCGGGATTGGACGAAAGAGAGTTAGAGGTGGCTAGAGCGAAGAGACATTT
ACTGGCCCGTGGGGCGGATGTCAGTTCGGATTGCTGGTTGGGTGGATCGG
AAGGGTCGTCCTGGGACAGGGAAGAAGGGGAGGAGGAAGAAAAAGAAAAG
GAGGATAACGTGAGAGGAATAATTAAGGATGATGGCGAGATTTGATTTGG
CGCAGTGGCTGGTTACAAAGAGGAGGGATAACTGGTGCTTGGACAGAAGA
CCAGGGAAGGCAGTCCGTAAGAAGAGGACGAAGAGCCATAAGAGAGACGC
GCCTTTGCGCCTTGGTGAAAAGCCAAAACGAAACACGAGGTAGAAAATTT
TAATCATGCGCGATGCCCTTGCCGTGGTCAGCTGGCAGGGATACATACGC
TTTCAGGGAGAGGAGTTAGAATCGCGATCTACGCTATGGCAGGTTTGTTA
CGGTCTGCCGGGCATTTCGCGTGTAGGAATAGTACGACGCCTGAATGGAG
TCCAAGAGAAAAATGAAAGAGACCCCGATAAAATGAAGCAAATGTGAGCC
GAGAAAACAGTGAC
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protein sequence of jgi.p|Nanoce1779_2|596369

>mRNA_6803-protein ID=mRNA_6803-protein|Name=jgi.p|Nanoce1779_2|596369|organism=Nannochloropsis oceanica|type=polypeptide|length=278bp
MQDTAPNFKPLLSFGFRKKSPAQKPVNAVASIFVQQNGNDDDVDVEDTVV
KTLSLQAVAVEKIVSLPSSPPGNASSKQAKVDALREAGNARADAGNMRQA
LTLFEEAISLAPTSSILFELKSQCHLSLEEYLEAVRAARRAVDLAPEWSE
GALTLGRSLLSLGEVRAAVTVLSEVLGRDGCNEEIREELIYANNALMELR
RREADFDLQLNGRAGLDERELEVARAKRHLLARGADVSSDCWLGGSEGSS
WDREEGEEEEKEKEDNVRGIIKDDGEI*
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mRNA from alignment at scaffold_17:134814..136027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6803 ID=mRNA_6803|Name=jgi.p|Nanoce1779_2|596369|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp|location=Sequence derived from alignment at scaffold_17:134814..136027- (Nannochloropsis oceanica)
CAGGTAGACACATGCAAGACACTGCGCCAAATTTCAAACCTCTCCTCTCC
TTTGGCTTTCGCAAGAAGTCCCCTGCCCAAAAACCAGTGAATGCCGTCGC
CTCTATCTTTGTCCAACAAAACGGCAACGACGATGATGTGGATGTGGAGG
ATACAGTGGTGAAGACCTTGAGCTTGCAGGCCGTCGCTGTCGAGAAAATC
GTATCTCTGCCTTCCTCCCCACCTGGGAATGCCAGCTCAAAGCAAGCCAA
GGTGGACGCGCTTCGGGAAGCTGGGAATGCAAGGGCCGACGCCGGTAACA
TGAGACAGGCGTTGACCCTTTTTGAAGAGGCAATCAGTTTGGCCCCGACC
AGCAGTATTTTATTTGAACTCAAGTCTCAATGTCACCTCTCATTGGAGGA
ATACCTCGAAGCGGTGCGCGCCGCCAGGCGAGCGGTGGATCTCGCGCCGG
AATGGAGTGAGGGGGCCTTGACTTTGGGTCGATCGCTTTTATCGTTGGGT
GAAGTGCGAGCAGCAGTAACAGTACTAAGCGAGGTATTAGGAAGGGATGG
CTGCAACGAGGAAATACGCGAGGAGTTGATCTATGCAAACAACGCCTTGA
TGGAACTGAGGCGACGGGAGGCGGATTTCGATTTACAATTAAACGGGAGG
GCGGGATTGGACGAAAGAGAGTTAGAGGTGGCTAGAGCGAAGAGACATTT
ACTGGCCCGTGGGGCGGATGTCAGTTCGGATTGCTGGTTGGGTGGATCGG
AAGGGTCGTCCTGGGACAGGGAAGAAGGGGAGGAGGAAGAAAAAGAAAAG
GAGGATAACGTGAGAGGAATAATTAAGGATGATGGCGAGATTTGATTTGG
CGCAGTGGCTGGTTACAAAGAGGAGGGATAACTGGTGCTTGGACAGAAGA
CCAGGGAAGGCAGTCCGTAAGAAGAGGACGAAGAGCCATAAGAGAGACGC
GCCTTTGCGCCTTGGTGAAAAGCCAAAACGAAACACGAGGTAGAAAATTT
TAATCATGCGCGATGCCCTTGCCGTGGTCAGCTGGCAGGGATACATACGC
TTTCAGGGAGAGGAGTTAGAATCGCGATCTACGCTATGGCAGGTTTGTTA
CGGTCTGCCGGGCATTTCGCGTGTAGGAATAGTACGACGCCTGAATGGAG
TCCAAGAGAAAAATGAAAGAGACCCCGATAAAATGAAGCAAATGTGAGCC
GAGAAAACAGTGAC
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Coding sequence (CDS) from alignment at scaffold_17:134814..136027-

>mRNA_6803 ID=mRNA_6803|Name=jgi.p|Nanoce1779_2|596369|organism=Nannochloropsis oceanica|type=CDS|length=834bp|location=Sequence derived from alignment at scaffold_17:134814..136027- (Nannochloropsis oceanica)
ATGCAAGACACTGCGCCAAATTTCAAACCTCTCCTCTCCTTTGGCTTTCG
CAAGAAGTCCCCTGCCCAAAAACCAGTGAATGCCGTCGCCTCTATCTTTG
TCCAACAAAACGGCAACGACGATGATGTGGATGTGGAGGATACAGTGGTG
AAGACCTTGAGCTTGCAGGCCGTCGCTGTCGAGAAAATCGTATCTCTGCC
TTCCTCCCCACCTGGGAATGCCAGCTCAAAGCAAGCCAAGGTGGACGCGC
TTCGGGAAGCTGGGAATGCAAGGGCCGACGCCGGTAACATGAGACAGGCG
TTGACCCTTTTTGAAGAGGCAATCAGTTTGGCCCCGACCAGCAGTATTTT
ATTTGAACTCAAGTCTCAATGTCACCTCTCATTGGAGGAATACCTCGAAG
CGGTGCGCGCCGCCAGGCGAGCGGTGGATCTCGCGCCGGAATGGAGTGAG
GGGGCCTTGACTTTGGGTCGATCGCTTTTATCGTTGGGTGAAGTGCGAGC
AGCAGTAACAGTACTAAGCGAGGTATTAGGAAGGGATGGCTGCAACGAGG
AAATACGCGAGGAGTTGATCTATGCAAACAACGCCTTGATGGAACTGAGG
CGACGGGAGGCGGATTTCGATTTACAATTAAACGGGAGGGCGGGATTGGA
CGAAAGAGAGTTAGAGGTGGCTAGAGCGAAGAGACATTTACTGGCCCGTG
GGGCGGATGTCAGTTCGGATTGCTGGTTGGGTGGATCGGAAGGGTCGTCC
TGGGACAGGGAAGAAGGGGAGGAGGAAGAAAAAGAAAAGGAGGATAACGT
GAGAGGAATAATTAAGGATGATGGCGAGATTTGA
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Synonyms
Publications