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Properties
Property Name | Value |
TranscriptId | 599168 |
Track | FilteredModels2 |
ProteinId | 599082 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_20 | supercontig | scaffold_20:194983..197714 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_7533 ID=mRNA_7533|Name=jgi.p|Nanoce1779_2|599082|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp ACAGAGACGTGTCCCGGATACAGCGGTAGGGCACGGACGGACAGCCAATG GACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCTGGGAGAGGG GACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCAACGACATCG TCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAAGGTATCCCCAGC ACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAGGCACCCCTGCAT TGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGCTATACCTCGTCT TCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAGGCCCAGTCGGGG CAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCAAATTTTCCACGG CCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAGACCTTAAGCCAC AAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATTGCTGATTTCGGC CTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGACGCACGAGGTGGT GACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCTCCCAGACGTACG CCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTTGTGGAAATGCTC TGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGATCAGCTCTTCAA GATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAGGCGTAA CGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCCGCCGTGAAG CTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGATTTGTTGGA GAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCGCCAAGGCCGCCC TCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAGTTCAGGCAATAA GGGAATGAGGGAAGCAGGGAGGGACGAGGGAGGGACGGAGGAATCTTGCT AGTTGTTTTAGTGTAGGTATTTTCTATGTGCTCGTAAGGCCCGAGGCGGT TGTGCGCTTCGGTGGGGCACGACGTGTGAAATAAAGCGAGTGAAAGAGAG ATGGAGTGAGAGAAGAATTGAAGGAGAGGAGAGGGAGGGGGAGTGGGCAA TAGAGGGAGGGAGGAGTTATGGGATCGAGTAGAGTGTGCTATGCTTGGGT GCCTACACGATGACCAAAAATGACGACCTCCTACAAGAGAGAGGATTGTG CCACAGTAAGAGGGAGAATAAGAGGAAGGCACGGTGACGCGCGAGAGAAG TATGAAGGCAAACGAACGAAAAGAAGTGCGCGATAGAAGGAAGAAGAAGG AGGGAGAGAGTGTGTATGTGACGTAAAACGTGAGACAAAAGAGCAACGTG ACAAAAGGGGGGAAATGACGACGGAGAAAGAAGGATAGTGAAAGATGACA AGGGAGGGAGGGAAGAAGACAGGGGAGGAAGAAAGTGTAGTCACACACAA GGGGTCCACAGGCGGCCGCTCGCCATTTGCGCTGCATGTGCCTCCATGCG ATGCTGTGGAGAAAGGTGGGGGGGGAGAGAGTGTGAGCCTAACCCTAAAC GGAAACATGAGCGCGACCACACCGCCCCAATGGAAAGAGGTCCAAGAAGA AAGATGTGAGGAAAGAAAATGGCGTAGCATGGAACTTGAGCTAAGGAGAG CTC back to topprotein sequence of jgi.p|Nanoce1779_2|599082 >mRNA_7533-protein ID=mRNA_7533-protein|Name=jgi.p|Nanoce1779_2|599082|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp MDRYQKIEKNGGGNLGEGTYGVVYKARDKQTNDIVALKRIRLEMEDEGIP STALREISLLQELRHPCIVELLDCVQSEGRLYLVFEFVDRDLKKYMEAQS GQLARSVVKSFLFQIFHGLAFCHARGIMHRDLKPQNLLVSKEGRLKIADF GLARAFVPPIRPLTHEVVTLWYRPPEILLGSQTYAPPVDVWACGVIFVEM LCKRAMFQGDSEIDQLFKIFRSCGTPSEECWPGVTALQDWNPSFPIWPAV KLTKYCPTIDEAGLDLLEKLVVLDPKGRISAKAALYHRYFEDLDKQQFRQ * back to topmRNA from alignment at scaffold_20:194983..197714+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_7533 ID=mRNA_7533|Name=jgi.p|Nanoce1779_2|599082|organism=Nannochloropsis oceanica|type=mRNA|length=2732bp|location=Sequence derived from alignment at scaffold_20:194983..197714+ (Nannochloropsis oceanica) ACAGAGACGTGTCCCGGATACAGCGGTAGGGCACGGACGGACAGCCAATG
GACAGGTAAGAGAATCGCTTCTTTCTCCCCCTCCCCGCTTTCCCCTGCGC
CCTTTTAGCCACGCAGGCTTACACCCCCCTCTCTCCCTCCTTTCCACTTA
TTCCTACTCCCGCTATCTTCAGATATCAAAAGATTGAGAAAAATGGGGGC
GGAAATCTGGGAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAA
GCAGACCAACGACATCGTCGCCCTCAAGGTAGAGAGAGAGGAGGAAATGG
GGGGAGGGAAAGAGAGCGGCATGGTGAAAGTCAAGGAATGAGACCGAGCC
TATGAATTAGATAGAAATGTGTAGGATAATAATTTGTAATTCATTGTGTC
GATGCTTTGTTTTTTCCCCGTGTTATGGGCATCATTTCCTTGTCGATGCC
AGGGCGCATGCATTACTTGGTGGCTCAAAACACACGTATATCAAAACACA
CTCATACGCACACCCTTTCACTCCCGACACCAATAGAGGATTCGTCTAGA
GATGGAGGATGAAGGTATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGC
TACAAGAGCTGAGGCACCCCTGCATTGTTGAGTACGTTTTTGAGGGAGTG
ACGAAGGGATGGAGGGAGAGAGGGCGTGTGAGCTGAAAAGAGGAAGGTGG
TCGAGAGCATGGATACATAAGCAATGGGAAATCCATTTCCCACTTTCTGC
CTCGCTTCCTCGGTTTCTTCCATCTGACCCCTTCCCTCGCTCCCTCGCTC
ACTCCCTCCCTCCTTCCTTCCCCCCGCCCCAGACTACTGGACTGTGTCCA
AAGCGAAGGCCGGCTATACCTCGTCTTCGAGTTCGTCGACCGAGACCTGA
AAAAATACATGGAGGCCCAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAG
TCCTTCCTCTTCCAAATTTTCCACGGCCTCGCCTTTTGCCATGCCAGGGG
AATTATGCACCGAGACCTTAAGCCACAAAATCTGTTGGTCTCCAAAGAAG
GGAGGTTGAAAATTGCTGATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCG
ATTCGGCCCTTGACGCACGAGGTGGTGACGTTGTGGTATCGCCCCCCCGA
GATTTTGTTGGGCTCCCAGACGTACGCCCCTCCCGTGGACGTGTGGGCGT
GCGGCGTGATCTTTGTGGAAATGCTCTGTAAGCGCGCCATGTTCCAAGGC
GACTCCGAGATTGATCAGCTCTTCAAGGTACACTCAATAGGTTCCCCTTC
CCCCCTCTTCCCCTCTTTCTCTCCTTCCCTCTTTCCTTCCCTCCGAGCCC
TCGGCGCCTGCGCTCGTGAGACGTATTCATTCGAGATGCTGGCCAGGCAT
GAAAGCACCACCTCACTGATCCCTTCTCCCTTTGCCCCCTCCCTCCTTCC
CTTCCTCTTTATAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGC
TGGCCAGGCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTG
GCCCGCCGTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGC
TAGATTTGTTGGAGGTACGTCCTCCGTCCCTCCCATCTTTCCTCCTTCAC
TCTCTTTTCCTTCTCCTCTCCTCCCTACCGGTTCTCTTTCCCCCCTTTTT
GGCCCGCCGTGACGCTCACGAAATAACTGAACAATACGTGGTCATCGACG
AGGCGGAGCTGGAGAGAAGACTGATCTGAAGCGAAGAAAAAAAAGAGGGG
GGAAGGCGTGTCCTTGTCGTTGTGTCTACGTCTGGGTCGCGAAGCGCATC
TCACCCTCTTTTCCTCTTTCCCTATCTCAGAAACTGGTCGTGCTGGATCC
CAAGGGGCGGATAAGCGCCAAGGCCGCCCTCTACCACCGGTACTTCGAGG
ACCTTGACAAACAGCAGTTCAGGCAATAAGGGAATGAGGGAAGCAGGGAG
GGACGAGGGAGGGACGGAGGAATCTTGCTAGTTGTTTTAGTGTAGGTATT
TTCTATGTGCTCGTAAGGCCCGAGGCGGTTGTGCGCTTCGGTGGGGCACG
ACGTGTGAAATAAAGCGAGTGAAAGAGAGATGGAGTGAGAGAAGAATTGA
AGGAGAGGAGAGGGAGGGGGAGTGGGCAATAGAGGGAGGGAGGAGTTATG
GGATCGAGTAGAGTGTGCTATGCTTGGGTGCCTACACGATGACCAAAAAT
GACGACCTCCTACAAGAGAGAGGATTGTGCCACAGTAAGAGGGAGAATAA
GAGGAAGGCACGGTGACGCGCGAGAGAAGTATGAAGGCAAACGAACGAAA
AGAAGTGCGCGATAGAAGGAAGAAGAAGGAGGGAGAGAGTGTGTATGTGA
CGTAAAACGTGAGACAAAAGAGCAACGTGACAAAAGGGGGGAAATGACGA
CGGAGAAAGAAGGATAGTGAAAGATGACAAGGGAGGGAGGGAAGAAGACA
GGGGAGGAAGAAAGTGTAGTCACACACAAGGGGTCCACAGGCGGCCGCTC
GCCATTTGCGCTGCATGTGCCTCCATGCGATGCTGTGGAGAAAGGTGGGG
GGGGAGAGAGTGTGAGCCTAACCCTAAACGGAAACATGAGCGCGACCACA
CCGCCCCAATGGAAAGAGGTCCAAGAAGAAAGATGTGAGGAAAGAAAATG
GCGTAGCATGGAACTTGAGCTAAGGAGAGCTC back to topCoding sequence (CDS) from alignment at scaffold_20:194983..197714+ >mRNA_7533 ID=mRNA_7533|Name=jgi.p|Nanoce1779_2|599082|organism=Nannochloropsis oceanica|type=CDS|length=5418bp|location=Sequence derived from alignment at scaffold_20:194983..197714+ (Nannochloropsis oceanica) ATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCTGGGAGA GGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCAACGACA TCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAAGGTATCCCC AGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAGGCACCCCTG CATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGCTATACCTCG TCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAGGCCCAGTCG GGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCAAATTTTCCA CGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAGACCTTAAGC CACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATTGCTGATTTC GGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGACGCACGAGGT GGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCTCCCAGACGT ACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTTGTGGAAATG CTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGATCAGCTCTT CAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAGGCG TAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCCGCCGTG AAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGATTTGTT GGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCGCCAAGGCCG CCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAGTTCAGGCAA TAAATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCTGGG AGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCAACG ACATCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAAGGTATC CCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAGGCACCC CTGCATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGCTATACC TCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAGGCCCAG TCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCAAATTTT CCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAGACCTTA AGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATTGCTGAT TTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGACGCACGA GGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCTCCCAGA CGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTTGTGGAA ATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGATCAGCT CTTCAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGCCAG GCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCCGCC GTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGATTT GTTGGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCGCCAAGG CCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAGTTCAGG CAATAAATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAATCT GGGAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGACCA ACGACATCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAAGGT ATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAGGCA CCCCTGCATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGCTAT ACCTCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAGGCC CAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCAAAT TTTCCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAGACC TTAAGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATTGCT GATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGACGCA CGAGGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCTCCC AGACGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTTGTG GAAATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGATCA GCTCTTCAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCTGGC CAGGCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGGCCC GCCGTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCTAGA TTTGTTGGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCGCCA AGGCCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAGTTC AGGCAATAAATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGGAAA TCTGGGAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGCAGA CCAACGACATCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGATGAA GGTATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCTGAG GCACCCCTGCATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCCGGC TATACCTCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATGGAG GCCCAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTTCCA AATTTTCCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACCGAG ACCTTAAGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAAATT GCTGATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTTGAC GCACGAGGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGGGCT CCCAGACGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATCTTT GTGGAAATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGATTGA TCAGCTCTTCAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAATGCT GGCCAGGCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATCTGG CCCGCCGTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGGGCT AGATTTGTTGGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAAGCG CCAAGGCCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAGCAG TTCAGGCAATAAATGGACAGATATCAAAAGATTGAGAAAAATGGGGGCGG AAATCTGGGAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACAAGC AGACCAACGACATCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAGGAT GAAGGTATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGAGCT GAGGCACCCCTGCATTGTTGAACTACTGGACTGTGTCCAAAGCGAAGGCC GGCTATACCTCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATACATG GAGGCCCAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCTCTT CCAAATTTTCCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGCACC GAGACCTTAAGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTGAAA ATTGCTGATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCCCTT GACGCACGAGGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGTTGG GCTCCCAGACGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTGATC TTTGTGGAAATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGAGAT TGATCAGCTCTTCAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGGAAT GCTGGCCAGGCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCCATC TGGCCCGCCGTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGCGGG GCTAGATTTGTTGGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGATAA GCGCCAAGGCCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAAACAG CAGTTCAGGCAATAAATGGACAGATATCAAAAGATTGAGAAAAATGGGGG CGGAAATCTGGGAGAGGGGACGTACGGTGTGGTGTACAAGGCTCGGGACA AGCAGACCAACGACATCGTCGCCCTCAAGAGGATTCGTCTAGAGATGGAG GATGAAGGTATCCCCAGCACAGCGTTGCGGGAGATTTCCTTGCTACAAGA GCTGAGGCACCCCTGCATTGTTGAACTACTGGACTGTGTCCAAAGCGAAG GCCGGCTATACCTCGTCTTCGAGTTCGTCGACCGAGACCTGAAAAAATAC ATGGAGGCCCAGTCGGGGCAACTCGCCCGCAGTGTCGTCAAGTCCTTCCT CTTCCAAATTTTCCACGGCCTCGCCTTTTGCCATGCCAGGGGAATTATGC ACCGAGACCTTAAGCCACAAAATCTGTTGGTCTCCAAAGAAGGGAGGTTG AAAATTGCTGATTTCGGCCTGGCCCGTGCCTTCGTCCCTCCGATTCGGCC CTTGACGCACGAGGTGGTGACGTTGTGGTATCGCCCCCCCGAGATTTTGT TGGGCTCCCAGACGTACGCCCCTCCCGTGGACGTGTGGGCGTGCGGCGTG ATCTTTGTGGAAATGCTCTGTAAGCGCGCCATGTTCCAAGGCGACTCCGA GATTGATCAGCTCTTCAAGATTTTCCGCTCCTGTGGCACGCCTTCGGAGG AATGCTGGCCAGGCGTAACGGCACTCCAGGACTGGAACCCGTCTTTTCCC ATCTGGCCCGCCGTGAAGCTAACAAAGTACTGCCCGACCATCGACGAGGC GGGGCTAGATTTGTTGGAGAAACTGGTCGTGCTGGATCCCAAGGGGCGGA TAAGCGCCAAGGCCGCCCTCTACCACCGGTACTTCGAGGACCTTGACAAA CAGCAGTTCAGGCAATAA back to top
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