jgi.p|Nanoce1779_2|601282, mRNA_8245 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601282
Unique NamemRNA_8245
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_23:172341..174016 -

Link to JBrowse

Properties
Property NameValue
TranscriptId601368
TrackFilteredModels2
ProteinId601282
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:172341..174016 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601282gene_8245Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601282mRNA_8245-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8245CDS_8245Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8245 ID=mRNA_8245|Name=jgi.p|Nanoce1779_2|601282|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
AGCACAGACACAAACGCGAGAACAACAAGACCTGCAGCACTGTCATTATG
GGGGACCGCGGTGCGACCTCGTACGCGTACTCGGGCGAGACGACTGAGTG
GGAGGACATTCTTATGAAAAAAAATGTGGTAACACGGGAACAAGTCTTCG
CTGCCAAGGGGCTCGACGATCGTGAGTTCGTCGACCCCTCTAAACCTTCA
CCTCCTGACGATCAGGAATGCGACAGCAAGGCCCATCCATTTGAAAACGC
AACGTTAGAGGAATTGGATGAAGCCGACGGCGAGGATGATGGGGGTGCGT
ATGACGATGATAGTGCCATGGCAAAGTTTAGAGAGATGCGGTTAAAGGAA
TGGAAGGAGAAGCAGGCCCGGGAGAGGTATGGAGACGTAGTTGAGATTTG
CAAAGACGACTGGATCCGAGAGGTGACCGAGGGAAGCAAGGGAGGAGGGG
GGGAAGGGCAGTGGGTGGTGGTACATTTGTACCAGGACCGGGTTGAAGAG
TGTCGTTTATTAGATGAGATTCTGAGGGAAGTGGCATTCAAATTTAAAAG
TTTGAAAATATTGAAGATCTTGTCAACTTCCGCGGTGGAAAATTGGCCGG
ATCGGAACCTGCCAACCTTGTTTGTTTACAAAGACGGGGTGTTGAAGACG
CAGATGCTGGGCTTGAAAAAGGTGGGAGGGAGGGGGACGAGGGCTAAGGA
TCTTGAGTGGTGGTTGGCCGGGGAGGGGATAGTGGAAACGGAGATGGAAG
AGAACCCGCGGGAGGAGGAGGGGAGGGAGAGGAGGAGAGGGGGATTCAGG
GAAATGGCTGGGGGCTTGCGGAGGGGGTACGCGGAGGATGACGAAGATGA
CGATTAGAGGTAGGGTGATGTAGAAAAAGGAAATTGAATCGTGACGAGAA
AGCAAGACAAAAAAAGAGCTCTAGGAGAAGGGCGCACAAGCTACCAAATT
TATGTTGTGTTTGCTTTGCACCTGGGGAGGAAGCGCAGATGGAAAGGAAG
AGATTTGTGTGCCAGTAACTGAAAGAAAGTCATTTTCATTCAAAAAAACA
AGAGAAGAAATGGCTCGAAGGACGTTGGGGAAAGAAACAGAAGTGTTCAA
TTTCTCCAGCATCGTTTTTCCGCACGTCCCTGCCCATGCTTTTCGAAAAG
ACGTCTCCAAAACCCCATCCGGCTTCCGTAGCATTCATGATCATCTTCCC
ATTGTCATGATTTTTTGGAGTGCATATCCATG
back to top

protein sequence of jgi.p|Nanoce1779_2|601282

>mRNA_8245-protein ID=mRNA_8245-protein|Name=jgi.p|Nanoce1779_2|601282|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MGDRGATSYAYSGETTEWEDILMKKNVVTREQVFAAKGLDDREFVDPSKP
SPPDDQECDSKAHPFENATLEELDEADGEDDGGAYDDDSAMAKFREMRLK
EWKEKQARERYGDVVEICKDDWIREVTEGSKGGGGEGQWVVVHLYQDRVE
ECRLLDEILREVAFKFKSLKILKILSTSAVENWPDRNLPTLFVYKDGVLK
TQMLGLKKVGGRGTRAKDLEWWLAGEGIVETEMEENPREEEGRERRRGGF
REMAGGLRRGYAEDDEDDD*
back to top

mRNA from alignment at scaffold_23:172341..174016-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8245 ID=mRNA_8245|Name=jgi.p|Nanoce1779_2|601282|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp|location=Sequence derived from alignment at scaffold_23:172341..174016- (Nannochloropsis oceanica)
AGCACAGACACAAACGCGAGAACAACAAGACCTGCAGCACTGTCATTATG
GGGGACCGCGGTGCGACCTCGTACGCGTACTCGGGCGAGACGACTGAGTG
GGAGGTGAGATGGGTGGGGATGAGGCTTGCTTGCTTACTTTCTTTTGTGA
GGGGGCGGTAGCTCGACTGTTTGCACACCAAAGACATCTCCATGGCACGT
ATACATGGCCACGCAAGAAAGACAGAGCTGTAGCGGTGTCTATGTTTGTA
TGTGCTCGGTGATGACCGTTGCGTCGGTTGCCTGTTGCTTGATGCCGTCC
GCCCTGCCTGAAGCACCTCAAGACTCGTAAGACACAGGACTGCCACCACT
CCTCCGCTCCCTCTAGAACTTCATCACGGACATCCTCACACCTTGACGGA
CTTGAAAATATAATTGCCCTTGTCGGGTCGCCGTTCTGCCCATGATGCTT
GCTTGCTTCCTTCCTACTTCCTGCCCTCGCACACACATAAAGTATCCCAC
ACCCACATCGTTTCCTCCCTCCCTCCCTCCCTTCTGTCAACTAAACAGGA
CATTCTTATGAAAAAAAATGTGGTAACACGGGAACAAGTCTTCGCTGCCA
AGGGGCTCGACGATCGTGAGTTCGTCGACCCCTCTAAACCTTCACCTCCT
GACGATCAGGAATGCGACAGCAAGGCCCATCCATTTGAAAACGCAACGTT
AGAGGAATTGGATGAAGCCGACGGCGAGGATGATGGGGGTGCGTATGACG
ATGATAGTGCCATGGCAAAGTTTAGAGAGATGCGGTTAAAGGAATGGAAG
GAGAAGCAGGCCCGGGAGAGGTATGGAGACGTAGTTGAGATTTGCAAAGA
CGACTGGATCCGAGAGGTGACCGAGGGAAGCAAGGGAGGAGGGGGGGAAG
GGCAGTGGGTGGTGGTACATTTGTACCAGGACCGGGTTGAAGAGTGTCGT
TTATTAGATGAGATTCTGAGGGAAGTGGCATTCAAATTTAAAAGTTTGAA
AATATTGAAGATCTTGTCAACTTCCGCGGTGGAAAATTGGCCGGATCGGA
ACCTGCCAACCTTGTTTGTTTACAAAGACGGGGTGTTGAAGACGCAGATG
CTGGGCTTGAAAAAGGTGGGAGGGAGGGGGACGAGGGCTAAGGATCTTGA
GTGGTGGTTGGCCGGGGAGGGGATAGTGGAAACGGAGATGGAAGAGAACC
CGCGGGAGGAGGAGGGGAGGGAGAGGAGGAGAGGGGGATTCAGGGAAATG
GCTGGGGGCTTGCGGAGGGGGTACGCGGAGGATGACGAAGATGACGATTA
GAGGTAGGGTGATGTAGAAAAAGGAAATTGAATCGTGACGAGAAAGCAAG
ACAAAAAAAGAGCTCTAGGAGAAGGGCGCACAAGCTACCAAATTTATGTT
GTGTTTGCTTTGCACCTGGGGAGGAAGCGCAGATGGAAAGGAAGAGATTT
GTGTGCCAGTAACTGAAAGAAAGTCATTTTCATTCAAAAAAACAAGAGAA
GAAATGGCTCGAAGGACGTTGGGGAAAGAAACAGAAGTGTTCAATTTCTC
CAGCATCGTTTTTCCGCACGTCCCTGCCCATGCTTTTCGAAAAGACGTCT
CCAAAACCCCATCCGGCTTCCGTAGCATTCATGATCATCTTCCCATTGTC
ATGATTTTTTGGAGTGCATATCCATG
back to top

Coding sequence (CDS) from alignment at scaffold_23:172341..174016-

>mRNA_8245 ID=mRNA_8245|Name=jgi.p|Nanoce1779_2|601282|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_23:172341..174016- (Nannochloropsis oceanica)
GACATTCTTATGAAAAAAAATGTGGTAACACGGGAACAAGTCTTCGCTGC
CAAGGGGCTCGACGATCGTGAGTTCGTCGACCCCTCTAAACCTTCACCTC
CTGACGATCAGGAATGCGACAGCAAGGCCCATCCATTTGAAAACGCAACG
TTAGAGGAATTGGATGAAGCCGACGGCGAGGATGATGGGGGTGCGTATGA
CGATGATAGTGCCATGGCAAAGTTTAGAGAGATGCGGTTAAAGGAATGGA
AGGAGAAGCAGGCCCGGGAGAGGTATGGAGACGTAGTTGAGATTTGCAAA
GACGACTGGATCCGAGAGGTGACCGAGGGAAGCAAGGGAGGAGGGGGGGA
AGGGCAGTGGGTGGTGGTACATTTGTACCAGGACCGGGTTGAAGAGTGTC
GTTTATTAGATGAGATTCTGAGGGAAGTGGCATTCAAATTTAAAAGTTTG
AAAATATTGAAGATCTTGTCAACTTCCGCGGTGGAAAATTGGCCGGATCG
GAACCTGCCAACCTTGTTTGTTTACAAAGACGGGGTGTTGAAGACGCAGA
TGCTGGGCTTGAAAAAGGTGGGAGGGAGGGGGACGAGGGCTAAGGATCTT
GAGTGGTGGTTGGCCGGGGAGGGGATAGTGGAAACGGAGATGGAAGAGAA
CCCGCGGGAGGAGGAGGGGAGGGAGAGGAGGAGAGGGGGATTCAGGGAAA
TGGCTGGGGGCTTGCGGAGGGGGTACGCGGAGGATGACGAAGATGACGAT
TAGATGGGGGACCGCGGTGCGACCTCGTACGCGTACTCGGGCGAGACGAC
TGAGTGGGAGGACATTCTTATGAAAAAAAATGTGGTAACACGGGAACAAG
TCTTCGCTGCCAAGGGGCTCGACGATCGTGAGTTCGTCGACCCCTCTAAA
CCTTCACCTCCTGACGATCAGGAATGCGACAGCAAGGCCCATCCATTTGA
AAACGCAACGTTAGAGGAATTGGATGAAGCCGACGGCGAGGATGATGGGG
GTGCGTATGACGATGATAGTGCCATGGCAAAGTTTAGAGAGATGCGGTTA
AAGGAATGGAAGGAGAAGCAGGCCCGGGAGAGGTATGGAGACGTAGTTGA
GATTTGCAAAGACGACTGGATCCGAGAGGTGACCGAGGGAAGCAAGGGAG
GAGGGGGGGAAGGGCAGTGGGTGGTGGTACATTTGTACCAGGACCGGGTT
GAAGAGTGTCGTTTATTAGATGAGATTCTGAGGGAAGTGGCATTCAAATT
TAAAAGTTTGAAAATATTGAAGATCTTGTCAACTTCCGCGGTGGAAAATT
GGCCGGATCGGAACCTGCCAACCTTGTTTGTTTACAAAGACGGGGTGTTG
AAGACGCAGATGCTGGGCTTGAAAAAGGTGGGAGGGAGGGGGACGAGGGC
TAAGGATCTTGAGTGGTGGTTGGCCGGGGAGGGGATAGTGGAAACGGAGA
TGGAAGAGAACCCGCGGGAGGAGGAGGGGAGGGAGAGGAGGAGAGGGGGA
TTCAGGGAAATGGCTGGGGGCTTGCGGAGGGGGTACGCGGAGGATGACGA
AGATGACGATTAGATGGGGGACCGCGGTGCGACCTCGTACGCGTACTCGG
GCGAGACGACTGAGTGGGAG
back to top
Synonyms
Publications