jgi.p|Nanoce1779_2|601428, mRNA_8281 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|601428
Unique NamemRNA_8281
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length836
Alignment locationscaffold_23:262790..263625 +

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Properties
Property NameValue
TranscriptId601514
TrackFilteredModels2
ProteinId601428
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_23supercontigscaffold_23:262790..263625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601428gene_8281Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|601428mRNA_8281-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8281CDS_8281Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8281 ID=mRNA_8281|Name=jgi.p|Nanoce1779_2|601428|organism=Nannochloropsis oceanica|type=mRNA|length=836bp
CGGGGGGCTCATGTTTGTTTGATCACTCCTGATCGCTTGCTTCAACGGGG
CAACTCATGCGTGAGCACTGCTTTCGCTCACCTGTCAACCCTGCTTGTAC
TGCTTTCGCTTACCTTTCAACCCTGCTTGTTTTGGTACCTGATGGCGTGA
CTGACACAATCGTGGTATGTTTTTGTTTATCTCTCATTTTATGTTTCTTG
GTATTGCACACTTAAGACTCCAATAAGCGTCCACTTCAAAGGGACGTGGG
GGGAATGGAAACGACAAGCACCGCGTGCTATTATGACGGTGGCCCTGCAG
ATTTTTCAATACCCGGCGTTTAACATGCTGCGCGTCGATTCTGATTATTT
GACTAGGAGTGTACACGGCCCACGCACTGTCCCACGTAGGCGAGTCGTCA
TGATGTGGACAAGTCCAAGTATGCGGAGAAGCTCGATCTTGCACTGGCTG
TGGTCACCCGTGTTTTTTACCTCCTGCCTCCCTCTGATCACACCGCACAG
TCTGAAGAACATCACACACTGCTGCTCTCCAGCAACAGCATCACTCCCAT
ATCTCCTGTACTTGCTACCACAATATCTGTTTGTATACATCGGCATCGCG
CTGTGCGCAAGCGTTGCCCTGCTGACTCCTATCCTTCATCTGGAGTAGCA
GCAGCATAATCCACCGCACGCCGGCGGGAGCGGATGGGAGCTATGTTTCC
ATTTGCGCTCGTAGCTGAGCCACTGCTTACACTACACATCTCGGAAGCGT
AGCAAGTGAGCATATATTTCTTGGTCTCCCGTCGCTTATCCCTGGCTCTC
TCCCTCAATTCACATCATACCGCGCAGATCTCGCCC
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protein sequence of jgi.p|Nanoce1779_2|601428

>mRNA_8281-protein ID=mRNA_8281-protein|Name=jgi.p|Nanoce1779_2|601428|organism=Nannochloropsis oceanica|type=polypeptide|length=122bp
MTVALQIFQYPAFNMLRVDSDYLTRSVHGPRTVPRRRVVMMWTSPSMRRS
SILHWLWSPVFFTSCLPLITPHSLKNITHCCSPATASLPYLLYLLPQYLF
VYIGIALCASVALLTPILHLE*
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mRNA from alignment at scaffold_23:262790..263625+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8281 ID=mRNA_8281|Name=jgi.p|Nanoce1779_2|601428|organism=Nannochloropsis oceanica|type=mRNA|length=836bp|location=Sequence derived from alignment at scaffold_23:262790..263625+ (Nannochloropsis oceanica)
CGGGGGGCTCATGTTTGTTTGATCACTCCTGATCGCTTGCTTCAACGGGG
CAACTCATGCGTGAGCACTGCTTTCGCTCACCTGTCAACCCTGCTTGTAC
TGCTTTCGCTTACCTTTCAACCCTGCTTGTTTTGGTACCTGATGGCGTGA
CTGACACAATCGTGGTATGTTTTTGTTTATCTCTCATTTTATGTTTCTTG
GTATTGCACACTTAAGACTCCAATAAGCGTCCACTTCAAAGGGACGTGGG
GGGAATGGAAACGACAAGCACCGCGTGCTATTATGACGGTGGCCCTGCAG
ATTTTTCAATACCCGGCGTTTAACATGCTGCGCGTCGATTCTGATTATTT
GACTAGGAGTGTACACGGCCCACGCACTGTCCCACGTAGGCGAGTCGTCA
TGATGTGGACAAGTCCAAGTATGCGGAGAAGCTCGATCTTGCACTGGCTG
TGGTCACCCGTGTTTTTTACCTCCTGCCTCCCTCTGATCACACCGCACAG
TCTGAAGAACATCACACACTGCTGCTCTCCAGCAACAGCATCACTCCCAT
ATCTCCTGTACTTGCTACCACAATATCTGTTTGTATACATCGGCATCGCG
CTGTGCGCAAGCGTTGCCCTGCTGACTCCTATCCTTCATCTGGAGTAGCA
GCAGCATAATCCACCGCACGCCGGCGGGAGCGGATGGGAGCTATGTTTCC
ATTTGCGCTCGTAGCTGAGCCACTGCTTACACTACACATCTCGGAAGCGT
AGCAAGTGAGCATATATTTCTTGGTCTCCCGTCGCTTATCCCTGGCTCTC
TCCCTCAATTCACATCATACCGCGCAGATCTCGCCC
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Coding sequence (CDS) from alignment at scaffold_23:262790..263625+

>mRNA_8281 ID=mRNA_8281|Name=jgi.p|Nanoce1779_2|601428|organism=Nannochloropsis oceanica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_23:262790..263625+ (Nannochloropsis oceanica)
ATGACGGTGGCCCTGCAGATTTTTCAATACCCGGCGTTTAACATGCTGCG
CGTCGATTCTGATTATTTGACTAGGAGTGTACACGGCCCACGCACTGTCC
CACGTAGGCGAGTCGTCATGATGTGGACAAGTCCAAGTATGCGGAGAAGC
TCGATCTTGCACTGGCTGTGGTCACCCGTGTTTTTTACCTCCTGCCTCCC
TCTGATCACACCGCACAGTCTGAAGAACATCACACACTGCTGCTCTCCAG
CAACAGCATCACTCCCATATCTCCTGTACTTGCTACCACAATATCTGTTT
GTATACATCGGCATCGCGCTGTGCGCAAGCGTTGCCCTGCTGACTCCTAT
CCTTCATCTGGAGTAG
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Synonyms
Publications