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Properties
Property Name | Value |
TranscriptId | 197607 |
Track | FilteredModels2 |
ProteinId | 197521 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_24 | supercontig | scaffold_24:375530..378025 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp GCCTCTACCTCATTTTTTTGCCTCATCCACTGCTGGCGTCACTGGACGTC ATCAGGATTATGCGATATTCCATCACATCTTCCCACCCCCCTGCCGTATA CACTTCGTGCCATGCCAGCGACTAATAATAACAACAACAATAACAATGAG AACATCAGCAGCAGCAGTAGACAAATTCTAACTGTCGCGCGTACAATGTT TATACCCTCTATGCCTGTTCTTGTCTATCACCACTAACATCACCCACCCT CCCCTCTCTTTCCTCCCTCCCCTCCCTCCCACAGCACACGCTCAAAGCTA CCGAGATGCAGCCCCTTCTCCATTAATCAACAGATAAAGCCAACTCAGGA GCACCAGTAAAAGGGGGAGGCAGTGGCAGCAGTAATCGCCAAGTCGAAAT GGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTCTC CGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCACA CGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTATTT TGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGGATT TTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAGCA GTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGGAA GGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTGCTT TATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTACAC GCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTCTC CATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGACC ACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATGTT CTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTTAT CAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTCCC TCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCCCC CCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAGTT GTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTCCC TCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAGCC TTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGAGG GGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGGAA AGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCTGT TTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAGTG CGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCAGG AAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAGAG AGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTTGTT GCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTAAC ACATGCCCTAATTGTAAAGGAGTGTACCAAGGGCTGAGGGTGGGAGGAAG GGAAGGGAGGGTGGTGGCGTTGCCAGGAGGGAGGGGGGGGGGAAAGAAGA GGAGGAGGGCGGGGAGGAGCTATAATTATTTGGTTGGCGAGGAAGAGAGG AGGGTGGGGACGGATGATTGGGAAGAGGAAGGGGAGGAGGAAGGGGTCAT GTGCCA back to topprotein sequence of jgi.p|Nanoce1779_2|197521 >mRNA_8471-protein ID=mRNA_8471-protein|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp MVVPPAPAITFPSDLLSPAFEESLLREDSSDFITRQRIEAAQGNDALRHY FEAGFVHGSKGDKPVQDFFSNLGLEEKETLNGVAVAGQCQFSCVADQLWR KECREGWRADILLRKLALYVIATNEDDFRSFMLHAQPRTRRQNSTAGESV SIASYLQKMSHNSTDGDHLTLQALCDFFQCPIHVLSLVPSPFAERTLQHL IKTTIVLSSLFPRPLPSLPSLPPSLLATATDSIPPPFLPALAKLRVPKRE LWLTLRGEAHFRSLRPSLPPSLLEANYAEAALVALREGGREGRRDGGRKG GEVIVIEDDEEVEDKEGKEGGNEGRSVTEVCSICLNDIDEEGKAEEGKEE CGNEDEATMKRGGKEGQENEGGEEGLDAPSHEEERKSKRDERDASAAGWL LPLLPLFVSVAMERAL* back to topmRNA from alignment at scaffold_24:375530..378025+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at scaffold_24:375530..378025+ (Nannochloropsis oceanica) GCCTCTACCTCATTTTTTTGCCTCATCCACTGCTGGCGTCACTGGACGTC
ATCAGGATTATGCGATATTCCATCACATCTTCCCACCCCCCTGCCGTATA
CACTTCGTGCCATGCCAGCGACTAATAATAACAACAACAATAACAATGAG
AACATCAGCAGCAGCAGTAGACAAATTCTAACTGTCGCGCGTACAATGTT
TATACCCTCTATGCCTGTTCTTGTCTATCACCACTAACATCACCCACCCT
CCCCTCTCTTTCCTCCCTCCCCTCCCTCCCACAGCACACGCTCAAAGCTA
CCGAGATGCAGCCCCTTCTCCATTAATCAACAGATAAAGCCAACTCAGGA
GCACCAGTAAAAGGGGGAGGCAGTGGCAGCAGTAATCGCCAAGTCGAAAT
GGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTCTC
CGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCACA
CGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTATTT
TGAAGCGGGGTTTGTGCATGGGTAAGTGTAATCCCGCGCTCCCTCCCTCC
TTCCCTCCCTCCCTCCTTCCCTCCCATTCCTTTCCCCTTCAATTTCTTGT
TATGCATCAATCTTCTGGGTGTGAATAGCCGTTGAACGATATTACCAATG
TGGGTCTCAGTCGAATTGTTTATGAGGCTTGTTTAATTTATTTTAATTTA
TTCACAGGAGCAAAGGCGATAAACCCGTTCAGGATTTTTTTTCAAACCTA
GGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAGCAGTTGCGGGCCAGTG
TCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGGAAGGAGTGTAGAGAGG
GGTGGCGAGCTGACATTCTGTTACGGAAGCTTGCTTTATATGTGATAGCT
ACTAACGAGGTGAGCTTCAATATATATTGGAAAATACTCTCATGCATTAT
TTATTTGAATTGTGACATTGAAATCCATTTTTTTGTGTCTGAGTAGTTCT
TGATTGGTGTTTAAATTTGCATCTGTATATATGTGACTATTATTTCATTT
ATTATTTTATTTTTCAAACAAGATTTACGTTATTTATATTATTTTGTATT
CAATTATGTAATTGATAGTTGTAAATTTGTTCATGTATGTGTGTATGCAT
TTGTTCATTTATCGATTTATAACTTTATTTATTCATTGATGACGTATTCA
TTAATCCCCTCTTATTTCCTCCACTCAAATAAATCACTCAATCAATCAAC
CCCCGCACTCAGGACGATTTCCGCTCCTTCATGCTACACGCCCAGCCCCG
GACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTCTCCATCGCTTCCT
ACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGACCACTTGACACTC
CAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATGTTCTTTCCCTCGT
CCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTTATCAAAACGACCA
TCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTCCCTCCCTTCCCTC
CCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCCCCCCTCCCTTCCT
CCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAGTTGTGGTTGACCC
TGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTCCCTCCCTCCCTCC
TTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAGCCTTGAGGGAGGG
AGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGAGGGGAGGTGATTG
TGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGGAAAGGAAGGAGGG
AACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCTGTTTAAATGATAT
TGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAGTGCGGGAATGAGG
ATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCAGGAAAACGAAGGG
GGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAGAGAGGAAAAGTAA
GAGGGATGAAAGGCGTCGTCCCTCCTCCTCCTCCTCCTCCTCCACTTTCC
GCAATCAACCAAGGGCGGGCAGGAAGGAGGACGAGGACGAGGACAATGGG
GAGGGGGAGGAAGGGACGCGAGCGCAGCCGGATGGTTGTTGCCACTCCTT
CCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTAACACATGCCCTA
ATTGTAAAGGAGTGTACCAAGGGCTGAGGGTGGGAGGAAGGGAAGGGAGG
GTGGTGGCGTTGCCAGGAGGGAGGGGGGGGGGAAAGAAGAGGAGGAGGGC
GGGGAGGAGCTATAATTATTTGGTTGGCGAGGAAGAGAGGAGGGTGGGGA
CGGATGATTGGGAAGAGGAAGGGGAGGAGGAAGGGGTCATGTGCCA back to topCoding sequence (CDS) from alignment at scaffold_24:375530..378025+ >mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=CDS|length=5004bp|location=Sequence derived from alignment at scaffold_24:375530..378025+ (Nannochloropsis oceanica) ATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTC TCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCA CACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTAT TTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGGA TTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAG CAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGG AAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTGC TTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTAC ACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTC TCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGA CCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATG TTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTT ATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTC CCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCC CCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAG TTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTC CCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAG CCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGA GGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGG AAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCT GTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAG TGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCA GGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAG AGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTTG TTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTA AATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCT CTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATC ACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTA TTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGG ATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTA GCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAG GAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTG CTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTA CACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGT CTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCG ACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCAT GTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCT TATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTT CCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATC CCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGA GTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCT CCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTA GCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGG AGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAG GAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATC TGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGA GTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGC AGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAA GAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTT GTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGT AAATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTC TCTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCAT CACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATT ATTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAG GATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGT AGCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGA GGAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTT GCTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCT ACACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCG TCTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGC GACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCA TGTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACC TTATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCT TCCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTAT CCCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGG AGTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCC TCCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGT AGCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGG GAGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAA GGAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTAT CTGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAG AGTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGG CAGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGA AGAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGT TGTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTG TAAATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCT CTCTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCA TCACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACAT TATTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCA GGATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAG TAGCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGG AGGAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCT TGCTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGC TACACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCC GTCTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGG CGACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTC ATGTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACAC CTTATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCC TTCCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTA TCCCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGG GAGTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCC CTCCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGG TAGCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAG GGAGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGA AGGAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTA TCTGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAA GAGTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGG GCAGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAG AAGAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGG TTGTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCT GTAA back to top
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