jgi.p|Nanoce1779_2|197521, mRNA_8471 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|197521
Unique NamemRNA_8471
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1856
Alignment locationscaffold_24:375530..378025 +

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Properties
Property NameValue
TranscriptId197607
TrackFilteredModels2
ProteinId197521
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_24supercontigscaffold_24:375530..378025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197521gene_8471Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|197521mRNA_8471-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8471CDS_8471Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp
GCCTCTACCTCATTTTTTTGCCTCATCCACTGCTGGCGTCACTGGACGTC
ATCAGGATTATGCGATATTCCATCACATCTTCCCACCCCCCTGCCGTATA
CACTTCGTGCCATGCCAGCGACTAATAATAACAACAACAATAACAATGAG
AACATCAGCAGCAGCAGTAGACAAATTCTAACTGTCGCGCGTACAATGTT
TATACCCTCTATGCCTGTTCTTGTCTATCACCACTAACATCACCCACCCT
CCCCTCTCTTTCCTCCCTCCCCTCCCTCCCACAGCACACGCTCAAAGCTA
CCGAGATGCAGCCCCTTCTCCATTAATCAACAGATAAAGCCAACTCAGGA
GCACCAGTAAAAGGGGGAGGCAGTGGCAGCAGTAATCGCCAAGTCGAAAT
GGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTCTC
CGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCACA
CGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTATTT
TGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGGATT
TTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAGCA
GTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGGAA
GGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTGCTT
TATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTACAC
GCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTCTC
CATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGACC
ACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATGTT
CTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTTAT
CAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTCCC
TCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCCCC
CCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAGTT
GTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTCCC
TCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAGCC
TTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGAGG
GGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGGAA
AGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCTGT
TTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAGTG
CGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCAGG
AAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAGAG
AGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTTGTT
GCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTAAC
ACATGCCCTAATTGTAAAGGAGTGTACCAAGGGCTGAGGGTGGGAGGAAG
GGAAGGGAGGGTGGTGGCGTTGCCAGGAGGGAGGGGGGGGGGAAAGAAGA
GGAGGAGGGCGGGGAGGAGCTATAATTATTTGGTTGGCGAGGAAGAGAGG
AGGGTGGGGACGGATGATTGGGAAGAGGAAGGGGAGGAGGAAGGGGTCAT
GTGCCA
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protein sequence of jgi.p|Nanoce1779_2|197521

>mRNA_8471-protein ID=mRNA_8471-protein|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MVVPPAPAITFPSDLLSPAFEESLLREDSSDFITRQRIEAAQGNDALRHY
FEAGFVHGSKGDKPVQDFFSNLGLEEKETLNGVAVAGQCQFSCVADQLWR
KECREGWRADILLRKLALYVIATNEDDFRSFMLHAQPRTRRQNSTAGESV
SIASYLQKMSHNSTDGDHLTLQALCDFFQCPIHVLSLVPSPFAERTLQHL
IKTTIVLSSLFPRPLPSLPSLPPSLLATATDSIPPPFLPALAKLRVPKRE
LWLTLRGEAHFRSLRPSLPPSLLEANYAEAALVALREGGREGRRDGGRKG
GEVIVIEDDEEVEDKEGKEGGNEGRSVTEVCSICLNDIDEEGKAEEGKEE
CGNEDEATMKRGGKEGQENEGGEEGLDAPSHEEERKSKRDERDASAAGWL
LPLLPLFVSVAMERAL*
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mRNA from alignment at scaffold_24:375530..378025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=mRNA|length=2496bp|location=Sequence derived from alignment at scaffold_24:375530..378025+ (Nannochloropsis oceanica)
GCCTCTACCTCATTTTTTTGCCTCATCCACTGCTGGCGTCACTGGACGTC ATCAGGATTATGCGATATTCCATCACATCTTCCCACCCCCCTGCCGTATA CACTTCGTGCCATGCCAGCGACTAATAATAACAACAACAATAACAATGAG AACATCAGCAGCAGCAGTAGACAAATTCTAACTGTCGCGCGTACAATGTT TATACCCTCTATGCCTGTTCTTGTCTATCACCACTAACATCACCCACCCT CCCCTCTCTTTCCTCCCTCCCCTCCCTCCCACAGCACACGCTCAAAGCTA CCGAGATGCAGCCCCTTCTCCATTAATCAACAGATAAAGCCAACTCAGGA GCACCAGTAAAAGGGGGAGGCAGTGGCAGCAGTAATCGCCAAGTCGAAAT GGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTCTC CGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCACA CGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTATTT TGAAGCGGGGTTTGTGCATGGGTAAGTGTAATCCCGCGCTCCCTCCCTCC TTCCCTCCCTCCCTCCTTCCCTCCCATTCCTTTCCCCTTCAATTTCTTGT TATGCATCAATCTTCTGGGTGTGAATAGCCGTTGAACGATATTACCAATG TGGGTCTCAGTCGAATTGTTTATGAGGCTTGTTTAATTTATTTTAATTTA TTCACAGGAGCAAAGGCGATAAACCCGTTCAGGATTTTTTTTCAAACCTA GGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAGCAGTTGCGGGCCAGTG TCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGGAAGGAGTGTAGAGAGG GGTGGCGAGCTGACATTCTGTTACGGAAGCTTGCTTTATATGTGATAGCT ACTAACGAGGTGAGCTTCAATATATATTGGAAAATACTCTCATGCATTAT TTATTTGAATTGTGACATTGAAATCCATTTTTTTGTGTCTGAGTAGTTCT TGATTGGTGTTTAAATTTGCATCTGTATATATGTGACTATTATTTCATTT ATTATTTTATTTTTCAAACAAGATTTACGTTATTTATATTATTTTGTATT CAATTATGTAATTGATAGTTGTAAATTTGTTCATGTATGTGTGTATGCAT TTGTTCATTTATCGATTTATAACTTTATTTATTCATTGATGACGTATTCA TTAATCCCCTCTTATTTCCTCCACTCAAATAAATCACTCAATCAATCAAC CCCCGCACTCAGGACGATTTCCGCTCCTTCATGCTACACGCCCAGCCCCG GACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTCTCCATCGCTTCCT ACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGACCACTTGACACTC CAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATGTTCTTTCCCTCGT CCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTTATCAAAACGACCA TCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTCCCTCCCTTCCCTC CCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCCCCCCTCCCTTCCT CCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAGTTGTGGTTGACCC TGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTCCCTCCCTCCCTCC TTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAGCCTTGAGGGAGGG AGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGAGGGGAGGTGATTG TGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGGAAAGGAAGGAGGG AACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCTGTTTAAATGATAT TGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAGTGCGGGAATGAGG ATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCAGGAAAACGAAGGG GGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAGAGAGGAAAAGTAA GAGGGATGAAAGGCGTCGTCCCTCCTCCTCCTCCTCCTCCTCCACTTTCC GCAATCAACCAAGGGCGGGCAGGAAGGAGGACGAGGACGAGGACAATGGG GAGGGGGAGGAAGGGACGCGAGCGCAGCCGGATGGTTGTTGCCACTCCTT CCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTAACACATGCCCTA ATTGTAAAGGAGTGTACCAAGGGCTGAGGGTGGGAGGAAGGGAAGGGAGG GTGGTGGCGTTGCCAGGAGGGAGGGGGGGGGGAAAGAAGAGGAGGAGGGC GGGGAGGAGCTATAATTATTTGGTTGGCGAGGAAGAGAGGAGGGTGGGGA CGGATGATTGGGAAGAGGAAGGGGAGGAGGAAGGGGTCATGTGCCA
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Coding sequence (CDS) from alignment at scaffold_24:375530..378025+

>mRNA_8471 ID=mRNA_8471|Name=jgi.p|Nanoce1779_2|197521|organism=Nannochloropsis oceanica|type=CDS|length=5004bp|location=Sequence derived from alignment at scaffold_24:375530..378025+ (Nannochloropsis oceanica)
ATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCTC
TCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATCA
CACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTAT
TTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGGA
TTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTAG
CAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAGG
AAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTGC
TTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTAC
ACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGTC
TCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCGA
CCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCATG
TTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCTT
ATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTTC
CCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATCC
CCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGAG
TTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCTC
CCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTAG
CCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGGA
GGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAGG
AAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATCT
GTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGAG
TGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGCA
GGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAAG
AGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTTG
TTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGTA
AATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTCT
CTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCATC
ACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATTA
TTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAGG
ATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGTA
GCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGAG
GAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTTG
CTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCTA
CACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCGT
CTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGCG
ACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCAT
GTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACCT
TATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCTT
CCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTATC
CCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGGA
GTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCCT
CCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGTA
GCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGGG
AGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAAG
GAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTATC
TGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAGA
GTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGGC
AGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGAA
GAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGTT
GTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTGT
AAATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCTC
TCTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCAT
CACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACATT
ATTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCAG
GATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAGT
AGCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGGA
GGAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCTT
GCTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGCT
ACACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCCG
TCTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGGC
GACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTCA
TGTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACACC
TTATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCCT
TCCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTAT
CCCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGGG
AGTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCCC
TCCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGGT
AGCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAGG
GAGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGAA
GGAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTAT
CTGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAAG
AGTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGGG
CAGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAGA
AGAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGGT
TGTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCTG
TAAATGGTTGTCCCGCCTGCACCAGCCATTACCTTCCCAAGCGACCTCCT
CTCTCCGGCCTTCGAAGAGTCTCTTTTGCGGGAAGACTCTTCCGATTTCA
TCACACGACAAAGAATAGAAGCTGCACAGGGGAATGATGCACTCAGACAT
TATTTTGAAGCGGGGTTTGTGCATGGGAGCAAAGGCGATAAACCCGTTCA
GGATTTTTTTTCAAACCTAGGGCTCGAGGAAAAAGAAACGCTGAACGGAG
TAGCAGTTGCGGGCCAGTGTCAGTTTTCCTGTGTCGCAGATCAGCTATGG
AGGAAGGAGTGTAGAGAGGGGTGGCGAGCTGACATTCTGTTACGGAAGCT
TGCTTTATATGTGATAGCTACTAACGAGGACGATTTCCGCTCCTTCATGC
TACACGCCCAGCCCCGGACCCGCCGTCAGAACAGCACCGCCGGAGAGTCC
GTCTCCATCGCTTCCTACCTTCAAAAGATGAGCCATAACTCCACCGATGG
CGACCACTTGACACTCCAAGCGCTTTGCGATTTCTTCCAGTGCCCGATTC
ATGTTCTTTCCCTCGTCCCCTCCCCCTTCGCGGAACGCACACTCCAACAC
CTTATCAAAACGACCATCGTCCTCTCTTCCCTTTTCCCCCGACCTCTCCC
TTCCCTCCCTTCCCTCCCTCCTTCCCTCCTTGCCACTGCCACGGATTCTA
TCCCCCCTCCCTTCCTCCCTGCTCTCGCGAAGTTAAGAGTGCCAAAGCGG
GAGTTGTGGTTGACCCTGAGGGGGGAGGCACACTTCCGCTCCCTCCGTCC
CTCCCTCCCTCCCTCCTTGCTGGAAGCTAATTACGCAGAAGCGGCCTTGG
TAGCCTTGAGGGAGGGAGGGAGGGAGGGACGGAGGGACGGAGGGAGGAAG
GGAGGGGAGGTGATTGTGATTGAGGATGATGAGGAGGTGGAAGACAAGGA
AGGAAAGGAAGGAGGGAACGAGGGGAGAAGTGTGACAGAGGTATGTTCTA
TCTGTTTAAATGATATTGACGAGGAGGGGAAAGCGGAGGAAGGGAAAGAA
GAGTGCGGGAATGAGGATGAGGCAACGATGAAGAGGGGGGGAAAGGAAGG
GCAGGAAAACGAAGGGGGGGAGGAAGGGCTGGACGCTCCTTCCCACGAAG
AAGAGAGGAAAAGTAAGAGGGATGAAAGGGACGCGAGCGCAGCCGGATGG
TTGTTGCCACTCCTTCCACTTTTCGTGTCTGTGGCGATGGAGCGAGCTCT
GTAA
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Synonyms
Publications