|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 602487 |
| Track | FilteredModels2 |
| ProteinId | 602401 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_25 | supercontig | scaffold_25:85528..87311 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8072 ID=mRNA_8072|Name=jgi.p|Nanoce1779_2|602401|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp
GTCCTACACTACCTCCCCCTCTGCCTCCTCCTTCTCCAACACGACGCCAG
ATCCCGAGCCCTTCCTGCAGCATGCCCCCCCTCCCCCTCCCCCGTCCTTG
CCCTCCCTCCTTCACTCCTCTTATTCTTCCTCCACCTCCTTCTGCTCCTT
CTGACGCTTGTGACGGGGGAGGAATAGGTGGGGGGGAACCTCCGTGGCAG
GGCGATGGTGCGAAACGTGGTGCGAGTGAAGGAGAAAAGTTTGAAACCTC
CTCTTCGTCCTTCAGCTGTTGCTGATGTCGCTGCTGCTGCTGCTGTCGAT
AGGGCGACACGTGCGAATGAGAGAAAGGATAGGAAATCTCAGGCTGCGGC
GGCGAGGGCTGCAATTGATGTTTCTCGGAGGGGGCTTCATGTCGTTGTGT
GTGCTGCTGCTGCTGCAGCAGCTGAACACGGAAAGATCGATAGGGACGAT
GAAGAGGAGGCGGAGGCGGAGGAAGAAGATGACCGTGTCCTTCTTGCTGT
GATGGTTGCCTTTTTTCTTCTTCCGCTGCTGGTAGAGCGGTGACTAATGC
TGCTGCTGCAGCTCCTATTGTCGATTTCGCAGCTTCCGTTTGTGCTGTTG
CTAGTACTGCCGAGGTCACTGCCGATGTTGATTTGTGCCGTGAAAAGGGT
AAAGGAGGAGGGAGGAAAGGAGGCAAGTTTGACGAGAAAGAAGTATGGGG
ACAAGAGGGAGGAAGGGGAGGAGGGGGGGCCGAGGCGCATGCTGGTGCAT
GCAATTTCAAGCCTTGCGGCGAGTCTTGCACAGGGACAGGAGGAAGGAGA
GGACGAGGAGGATGTGAAGAGCTTGATGAATATGCGTGAGAGAAAGAAGA
GGATCGTGGAAGCGTTTGTTGGCAAGGACTGTGCTGCATGCGTTTTTTGC
CGGTGGGGGAAGGAGCGGTTGGTCCTCGGCCTAGTGAGTGTGTCAGCTGC
ATCGCTTTTCTCTGAGCAAGCAGCTCACAGCCACGCTGGGATATGTATCG
ACGAAAAGATGGTGTGGAGGAAGAAGGAGGAGGTCGAGGAGGCGATGCTT
CGAGGGCAGCTCGTGGTAGAGGTGATGACTCTGCTTCGGGTGGTGGTCCT
GGGGACACTGCTTCCTCCTTCTCCGTCCCCTCCTCGCGACCACGTTGGGA
GATGTAGCGACCATGTGCGGGGAGATGTTGGAGCATGACCGCTCGCTCCA
AAGGAATTAGAGAAGGCGCTGTTACGGAGACTGGTAGTTGAAATGTTGCT
GCTTCAGATATTGGACCTGCTGTTGGGGCGGCGGCTTCCTCATATACTCT
CTCATGCCGGCATTCCTTCTTCCTTTCCCCTTCCCATTGCTCCCCTTCCT
CGACATCCTCGGCAAAGAAGGATACAAACTCTGCGCAATTGATAAAGTCG
CGGTCGTCATCACTCAACAAGGCATTGTATGACAAGGCAGAGGCAAGAGC
TGGAGGCGGCGGGGGCAACTTAAGTGGTGGGACGAGCGCGAGACTGGCAG
AGCTGTCGGCCTGCACTGCTGCTCCGGGCGAAGCCAACAGCCGTTTTGTA
CCCCGCGGAGAAGGCATCTGGAGAGGAGACTGTCCATTGCGACCCAACGG
CGCACGCATGGCGTTTGGTAGGATGGGCGGAGTCCAGGAGGAGGCGGAAG
CGGAAGGGGAAGTGGGGTCGGCTGGCTGAATGGCATCTATGGGTGACGGT
GGCGGCGGCGGCGGTTGCATTGGTCTTGATGGTTTCCTTAGCTGGTCATG
CAATAAACTGCCTTGTCTTGACTGTGTCTGTGCT back to topprotein sequence of jgi.p|Nanoce1779_2|602401 >mRNA_8072-protein ID=mRNA_8072-protein|Name=jgi.p|Nanoce1779_2|602401|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MLLLQLLLSISQLPFVLLLVLPRSLPMLICAVKRVKEEGGKEASLTRKKY
GDKREEGEEGGPRRMLVHAISSLAASLAQGQEEGEDEEDVKSLMNMRERK
KRIVEAFVGKDCAACVFCRWGKERLVLGLVSVSAASLFSEQAAHSHAGIC
IDEKMVWRKKEEVEEAMLRGQLVVEVMTLLRVVVLGTLLPPSPSPPRDHV
GRCSDHVRGDVGA* back to topmRNA from alignment at scaffold_25:85528..87311- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8072 ID=mRNA_8072|Name=jgi.p|Nanoce1779_2|602401|organism=Nannochloropsis oceanica|type=mRNA|length=1784bp|location=Sequence derived from alignment at scaffold_25:85528..87311- (Nannochloropsis oceanica)
GTCCTACACTACCTCCCCCTCTGCCTCCTCCTTCTCCAACACGACGCCAG
ATCCCGAGCCCTTCCTGCAGCATGCCCCCCCTCCCCCTCCCCCGTCCTTG
CCCTCCCTCCTTCACTCCTCTTATTCTTCCTCCACCTCCTTCTGCTCCTT
CTGACGCTTGTGACGGGGGAGGAATAGGTGGGGGGGAACCTCCGTGGCAG
GGCGATGGTGCGAAACGTGGTGCGAGTGAAGGAGAAAAGTTTGAAACCTC
CTCTTCGTCCTTCAGCTGTTGCTGATGTCGCTGCTGCTGCTGCTGTCGAT
AGGGCGACACGTGCGAATGAGAGAAAGGATAGGAAATCTCAGGCTGCGGC
GGCGAGGGCTGCAATTGATGTTTCTCGGAGGGGGCTTCATGTCGTTGTGT
GTGCTGCTGCTGCTGCAGCAGCTGAACACGGAAAGATCGATAGGGACGAT
GAAGAGGAGGCGGAGGCGGAGGAAGAAGATGACCGTGTCCTTCTTGCTGT
GATGGTTGCCTTTTTTCTTCTTCCGCTGCTGGTAGAGCGGTGACTAATGC
TGCTGCTGCAGCTCCTATTGTCGATTTCGCAGCTTCCGTTTGTGCTGTTG
CTAGTACTGCCGAGGTCACTGCCGATGTTGATTTGTGCCGTGAAAAGGGT
AAAGGAGGAGGGAGGAAAGGAGGCAAGTTTGACGAGAAAGAAGTATGGGG
ACAAGAGGGAGGAAGGGGAGGAGGGGGGGCCGAGGCGCATGCTGGTGCAT
GCAATTTCAAGCCTTGCGGCGAGTCTTGCACAGGGACAGGAGGAAGGAGA
GGACGAGGAGGATGTGAAGAGCTTGATGAATATGCGTGAGAGAAAGAAGA
GGATCGTGGAAGCGTTTGTTGGCAAGGACTGTGCTGCATGCGTTTTTTGC
CGGTGGGGGAAGGAGCGGTTGGTCCTCGGCCTAGTGAGTGTGTCAGCTGC
ATCGCTTTTCTCTGAGCAAGCAGCTCACAGCCACGCTGGGATATGTATCG
ACGAAAAGATGGTGTGGAGGAAGAAGGAGGAGGTCGAGGAGGCGATGCTT
CGAGGGCAGCTCGTGGTAGAGGTGATGACTCTGCTTCGGGTGGTGGTCCT
GGGGACACTGCTTCCTCCTTCTCCGTCCCCTCCTCGCGACCACGTTGGGA
GATGTAGCGACCATGTGCGGGGAGATGTTGGAGCATGACCGCTCGCTCCA
AAGGAATTAGAGAAGGCGCTGTTACGGAGACTGGTAGTTGAAATGTTGCT
GCTTCAGATATTGGACCTGCTGTTGGGGCGGCGGCTTCCTCATATACTCT
CTCATGCCGGCATTCCTTCTTCCTTTCCCCTTCCCATTGCTCCCCTTCCT
CGACATCCTCGGCAAAGAAGGATACAAACTCTGCGCAATTGATAAAGTCG
CGGTCGTCATCACTCAACAAGGCATTGTATGACAAGGCAGAGGCAAGAGC
TGGAGGCGGCGGGGGCAACTTAAGTGGTGGGACGAGCGCGAGACTGGCAG
AGCTGTCGGCCTGCACTGCTGCTCCGGGCGAAGCCAACAGCCGTTTTGTA
CCCCGCGGAGAAGGCATCTGGAGAGGAGACTGTCCATTGCGACCCAACGG
CGCACGCATGGCGTTTGGTAGGATGGGCGGAGTCCAGGAGGAGGCGGAAG
CGGAAGGGGAAGTGGGGTCGGCTGGCTGAATGGCATCTATGGGTGACGGT
GGCGGCGGCGGCGGTTGCATTGGTCTTGATGGTTTCCTTAGCTGGTCATG
CAATAAACTGCCTTGTCTTGACTGTGTCTGTGCT back to topCoding sequence (CDS) from alignment at scaffold_25:85528..87311- >mRNA_8072 ID=mRNA_8072|Name=jgi.p|Nanoce1779_2|602401|organism=Nannochloropsis oceanica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_25:85528..87311- (Nannochloropsis oceanica)
ATGCTGCTGCTGCAGCTCCTATTGTCGATTTCGCAGCTTCCGTTTGTGCT
GTTGCTAGTACTGCCGAGGTCACTGCCGATGTTGATTTGTGCCGTGAAAA
GGGTAAAGGAGGAGGGAGGAAAGGAGGCAAGTTTGACGAGAAAGAAGTAT
GGGGACAAGAGGGAGGAAGGGGAGGAGGGGGGGCCGAGGCGCATGCTGGT
GCATGCAATTTCAAGCCTTGCGGCGAGTCTTGCACAGGGACAGGAGGAAG
GAGAGGACGAGGAGGATGTGAAGAGCTTGATGAATATGCGTGAGAGAAAG
AAGAGGATCGTGGAAGCGTTTGTTGGCAAGGACTGTGCTGCATGCGTTTT
TTGCCGGTGGGGGAAGGAGCGGTTGGTCCTCGGCCTAGTGAGTGTGTCAG
CTGCATCGCTTTTCTCTGAGCAAGCAGCTCACAGCCACGCTGGGATATGT
ATCGACGAAAAGATGGTGTGGAGGAAGAAGGAGGAGGTCGAGGAGGCGAT
GCTTCGAGGGCAGCTCGTGGTAGAGGTGATGACTCTGCTTCGGGTGGTGG
TCCTGGGGACACTGCTTCCTCCTTCTCCGTCCCCTCCTCGCGACCACGTT
GGGAGATGTAGCGACCATGTGCGGGGAGATGTTGGAGCATGA back to top
|