jgi.p|Nanoce1779_2|602462, mRNA_8094 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602462
Unique NamemRNA_8094
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1762
Alignment locationscaffold_25:135767..137528 -

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Properties
Property NameValue
TranscriptId602548
TrackFilteredModels2
ProteinId602462
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:135767..137528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602462gene_8094Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602462mRNA_8094-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8094CDS_8094Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8094 ID=mRNA_8094|Name=jgi.p|Nanoce1779_2|602462|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp
ACGGACCTTTGGTCTCTCTCTCGACCTTGCCCTTCTCTTGCCTCAATGAG
TGGGGCGTAGAAATAAATTTTGCGATTCGCAGTCACTCTTCTCTATAGTC
GCACACATGCAATGAATGGCGTTAAAAAGATCGGCGTGACCTCTTCATCC
GCCTGCTTGTCGAGAGGCTTAGGTATGGATTGCGCTTTCAATACATCACC
TCCCCTAATTTTTCACCATCACACCAAACAGAGGGTCATACACCCCCACG
TTTCACGCATCTCCCCACTTTGCTGACAGCATTTTCAGCATAATCGATAT
TCTAGTAAGAGTGCCACATAAAGGAGCCTTGAAGGTCCCGGGAGGAGGTC
TTGGGCTAGTGCGCAAAGCATGTCTCGTCTCGCCGCTTATGTGATGCCCT
CCTCATAACTTCCACGGGCAGGCTCCAGAAATTGTACCACACTCACACTA
AGGCATGGACAAGTCAAGTCTCATCAACCGCTTCGACAAGATCCACTCAT
ACAAACAAATCATACTCGCCCGTTCACAGGCTGTTGAGAAGAATCAACAT
AATGGCTTCCTCCCCCGCGCACACCGTCCTGCGCGATATCGGCCTGGGCG
GGCTGCCGCGCGTCCTCCTAAAGCACAAAGCCGGTGCCAGCGCAGAGGTC
TACAATTTCGGGGCCACCATTACGAGTTATAAGCCCACGCCAGAGCGTGA
AGTGCTTTTCGTCTCAAAAAAGGCCGTCTTTGATGGAAAGAAGGCTATCC
GTGGCGGTGTTCCGTTGGTCTTCCCTCAGTTTGGGCAACCGAAAAAGGAG
ATGGCGCAGCACGGGTTTGCCCGATCGTCGCATTGGGAGTTATCTGATAC
AGCGGTGACCGACGATGTAGTTAGAGCAGTGTTTCATTTGTCGGATTCAG
AGGCAACCCGTGCTTTGTGGGGGTTCCCTTTTCTGCTATCTTATACTCTT
TCGTTGACTGCCGGAGCACTGACGACGTCCCTGCGGATTGAGAATAAGGG
GGACAGACCTTTTGAGGCCCAGGCGTTGTTGCACACCTATTTGCGGGTAG
GAGATATTAAGAAGGTGTCATTGCATGGGTATCACCCGCATCCTTTCTTG
GATAAAATGGACATGCCGAAGGAGGGGGAGGTGCTGCCGGTGGAGGTGAG
GGAAATGGTGGAGGTTGGGGAGGAGACAGACCGGGTATATGAGACAGGGG
CGAATGAGGTGTCGGTCATGGAAGGGGGGCGGGAACGAGTGAGGGTTGAG
TACACAGCTTGTACGGTGGCAAAGGACGGGAGCGACGAGCCTTTTCCCAA
GCCAGATTGTGTGCTGTGGAATCCATGGGTGGAAAAAAGCAAGGCGATGG
CGGACTTTGGAGACGAGGAGTGGAGAGAGATGGTGTGTGTGGAGCCAGGA
ATTGTGAAGAGCTTTAATGTGCTTCCGCCTGGGCATGCTTTTGTGTTGGA
GCAGACGATAAGACCGGTGTGATTGGAGGGGGAGGGAGAAGGAGGCAGGG
AAAGAAGGCACATACCGGCTGAATTGTAGTTTAGAAAGGTTAAGGATAGA
CGGTGTAGAGGAAGGAAAAGGGGAATAACAGAATGGGGAATGTGAGGAGG
GGAAAGCAAGTGTTCAAATTAGAGTAATATAATGGGGAAGGTGTGGAGAG
AAAGACGCAAGAGTTCAAATTGCAAAAGCAGAGAAAATGCACAACCAAAC
GAGTGTCGGAAGACAGAAAAAGAGAGAACAAAACGAAAAAGCAAACAGGG
CATGTCGAAACA
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protein sequence of jgi.p|Nanoce1779_2|602462

>mRNA_8094-protein ID=mRNA_8094-protein|Name=jgi.p|Nanoce1779_2|602462|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MASSPAHTVLRDIGLGGLPRVLLKHKAGASAEVYNFGATITSYKPTPERE
VLFVSKKAVFDGKKAIRGGVPLVFPQFGQPKKEMAQHGFARSSHWELSDT
AVTDDVVRAVFHLSDSEATRALWGFPFLLSYTLSLTAGALTTSLRIENKG
DRPFEAQALLHTYLRVGDIKKVSLHGYHPHPFLDKMDMPKEGEVLPVEVR
EMVEVGEETDRVYETGANEVSVMEGGRERVRVEYTACTVAKDGSDEPFPK
PDCVLWNPWVEKSKAMADFGDEEWREMVCVEPGIVKSFNVLPPGHAFVLE
QTIRPV*
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mRNA from alignment at scaffold_25:135767..137528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8094 ID=mRNA_8094|Name=jgi.p|Nanoce1779_2|602462|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at scaffold_25:135767..137528- (Nannochloropsis oceanica)
ACGGACCTTTGGTCTCTCTCTCGACCTTGCCCTTCTCTTGCCTCAATGAG
TGGGGCGTAGAAATAAATTTTGCGATTCGCAGTCACTCTTCTCTATAGTC
GCACACATGCAATGAATGGCGTTAAAAAGATCGGCGTGACCTCTTCATCC
GCCTGCTTGTCGAGAGGCTTAGGTATGGATTGCGCTTTCAATACATCACC
TCCCCTAATTTTTCACCATCACACCAAACAGAGGGTCATACACCCCCACG
TTTCACGCATCTCCCCACTTTGCTGACAGCATTTTCAGCATAATCGATAT
TCTAGTAAGAGTGCCACATAAAGGAGCCTTGAAGGTCCCGGGAGGAGGTC
TTGGGCTAGTGCGCAAAGCATGTCTCGTCTCGCCGCTTATGTGATGCCCT
CCTCATAACTTCCACGGGCAGGCTCCAGAAATTGTACCACACTCACACTA
AGGCATGGACAAGTCAAGTCTCATCAACCGCTTCGACAAGATCCACTCAT
ACAAACAAATCATACTCGCCCGTTCACAGGCTGTTGAGAAGAATCAACAT
AATGGCTTCCTCCCCCGCGCACACCGTCCTGCGCGATATCGGCCTGGGCG
GGCTGCCGCGCGTCCTCCTAAAGCACAAAGCCGGTGCCAGCGCAGAGGTC
TACAATTTCGGGGCCACCATTACGAGTTATAAGCCCACGCCAGAGCGTGA
AGTGCTTTTCGTCTCAAAAAAGGCCGTCTTTGATGGAAAGAAGGCTATCC
GTGGCGGTGTTCCGTTGGTCTTCCCTCAGTTTGGGCAACCGAAAAAGGAG
ATGGCGCAGCACGGGTTTGCCCGATCGTCGCATTGGGAGTTATCTGATAC
AGCGGTGACCGACGATGTAGTTAGAGCAGTGTTTCATTTGTCGGATTCAG
AGGCAACCCGTGCTTTGTGGGGGTTCCCTTTTCTGCTATCTTATACTCTT
TCGTTGACTGCCGGAGCACTGACGACGTCCCTGCGGATTGAGAATAAGGG
GGACAGACCTTTTGAGGCCCAGGCGTTGTTGCACACCTATTTGCGGGTAG
GAGATATTAAGAAGGTGTCATTGCATGGGTATCACCCGCATCCTTTCTTG
GATAAAATGGACATGCCGAAGGAGGGGGAGGTGCTGCCGGTGGAGGTGAG
GGAAATGGTGGAGGTTGGGGAGGAGACAGACCGGGTATATGAGACAGGGG
CGAATGAGGTGTCGGTCATGGAAGGGGGGCGGGAACGAGTGAGGGTTGAG
TACACAGCTTGTACGGTGGCAAAGGACGGGAGCGACGAGCCTTTTCCCAA
GCCAGATTGTGTGCTGTGGAATCCATGGGTGGAAAAAAGCAAGGCGATGG
CGGACTTTGGAGACGAGGAGTGGAGAGAGATGGTGTGTGTGGAGCCAGGA
ATTGTGAAGAGCTTTAATGTGCTTCCGCCTGGGCATGCTTTTGTGTTGGA
GCAGACGATAAGACCGGTGTGATTGGAGGGGGAGGGAGAAGGAGGCAGGG
AAAGAAGGCACATACCGGCTGAATTGTAGTTTAGAAAGGTTAAGGATAGA
CGGTGTAGAGGAAGGAAAAGGGGAATAACAGAATGGGGAATGTGAGGAGG
GGAAAGCAAGTGTTCAAATTAGAGTAATATAATGGGGAAGGTGTGGAGAG
AAAGACGCAAGAGTTCAAATTGCAAAAGCAGAGAAAATGCACAACCAAAC
GAGTGTCGGAAGACAGAAAAAGAGAGAACAAAACGAAAAAGCAAACAGGG
CATGTCGAAACA
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Coding sequence (CDS) from alignment at scaffold_25:135767..137528-

>mRNA_8094 ID=mRNA_8094|Name=jgi.p|Nanoce1779_2|602462|organism=Nannochloropsis oceanica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_25:135767..137528- (Nannochloropsis oceanica)
ATGGCTTCCTCCCCCGCGCACACCGTCCTGCGCGATATCGGCCTGGGCGG
GCTGCCGCGCGTCCTCCTAAAGCACAAAGCCGGTGCCAGCGCAGAGGTCT
ACAATTTCGGGGCCACCATTACGAGTTATAAGCCCACGCCAGAGCGTGAA
GTGCTTTTCGTCTCAAAAAAGGCCGTCTTTGATGGAAAGAAGGCTATCCG
TGGCGGTGTTCCGTTGGTCTTCCCTCAGTTTGGGCAACCGAAAAAGGAGA
TGGCGCAGCACGGGTTTGCCCGATCGTCGCATTGGGAGTTATCTGATACA
GCGGTGACCGACGATGTAGTTAGAGCAGTGTTTCATTTGTCGGATTCAGA
GGCAACCCGTGCTTTGTGGGGGTTCCCTTTTCTGCTATCTTATACTCTTT
CGTTGACTGCCGGAGCACTGACGACGTCCCTGCGGATTGAGAATAAGGGG
GACAGACCTTTTGAGGCCCAGGCGTTGTTGCACACCTATTTGCGGGTAGG
AGATATTAAGAAGGTGTCATTGCATGGGTATCACCCGCATCCTTTCTTGG
ATAAAATGGACATGCCGAAGGAGGGGGAGGTGCTGCCGGTGGAGGTGAGG
GAAATGGTGGAGGTTGGGGAGGAGACAGACCGGGTATATGAGACAGGGGC
GAATGAGGTGTCGGTCATGGAAGGGGGGCGGGAACGAGTGAGGGTTGAGT
ACACAGCTTGTACGGTGGCAAAGGACGGGAGCGACGAGCCTTTTCCCAAG
CCAGATTGTGTGCTGTGGAATCCATGGGTGGAAAAAAGCAAGGCGATGGC
GGACTTTGGAGACGAGGAGTGGAGAGAGATGGTGTGTGTGGAGCCAGGAA
TTGTGAAGAGCTTTAATGTGCTTCCGCCTGGGCATGCTTTTGTGTTGGAG
CAGACGATAAGACCGGTGTGA
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Synonyms
Publications