jgi.p|Nanoce1779_2|603371, mRNA_8621 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|603371
Unique NamemRNA_8621
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2066
Alignment locationscaffold_26:373020..375085 -

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Properties
Property NameValue
TranscriptId603457
TrackFilteredModels2
ProteinId603371
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_26supercontigscaffold_26:373020..375085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603371gene_8621Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|603371mRNA_8621-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8621CDS_8621Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Nanoce1779_2|603371|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp
GGCGAGGGGTAGCTGCTGTACTCCGCGTGACGTACTTATGGGGAACGGCC
GTTGAATCCATGGATGCGGATGGCAAAGTCTTGACGTTGTCAGACGGCTC
GAAGCTGGCGTTTGACAAGTGCTTATTGGCGGTGGGGGAGGGACCTGTTC
AAGTACCCTCGAGATTCGTGGATCGCGTGGTGGCAAGCCGGGTCGTATCG
TTGTATGGCGTGGAGGACCGACGGGCATTAGGTCGATTGGTGGCGCAGGG
GCACCACGTGACCATCGTGGGCTCGAACTGGGCGAGTGTGGAGTTGGCCA
GCTTTCTGAGCGATGTGGCCCGGCGGCATGGCTGGGGTCGAACCAGCGTG
ACGTTAATATTTCCTGAATCTACGCCATTGGCGAAAGAACTGCCACGGTA
CTTGTCGGGGCTGTTGTTGCGGCGATTAGAACGGCGGGGCGTGGATGTCA
TTCCTCACACGTGTGTCAAATACATTGGCCGAGCGATGGACTATGAAGTG
CAGTCACTGCGATCTTCCCTATCTGCCCCAGCCAACAGTGTCGAAAATAG
TGATACATGCTCTAAAGGTCATTCTGATGTAGATAACAACCACATTCAAG
GAGATCAAGAGCCTACAGTTTCCTTTGACCCTGTCCGCGTGTATCTGACA
AGTAAATTTGCCAGTTTGGATTCGACGGCGCTCTTGACAGATCAAGTGGT
GGTTGGGGGATCTTCCCCGCAAGGGCGATTGCCCATTCTACGTTTTGATG
GTCATCCATTGGAGGTGGATGAGCGCACAGGTGGTCTTGTTGTTTCCCAC
GAATTGCAGGCCTCTAGCAGCGTTTTTGTTGCGGGAGATGCGGCCTTCTT
TCCTTGCACTGACATGGCGAAACGCATCACTGTGCGGTCTGCCGATCACG
CCTATCACTCGGGGTGGGTTGCAGGGATGAATATGGCGGGGCGAGGTGTC
CGCTACCAGCATTTGCCCTTGTTTTTCGGGACGATCCCACGGTTGGGCGT
ACGGGCGGCTTGGGTTGGGCAATGTGATGGGAGCGCTGAGACGCATGGGT
TTTGGTGGAAGAATAACACCAATGGCGGTAGCAGCAACAGCATGGCACGG
AAACGCACACGTATGGACCCGCCACCAGAGGCACAGGCTGTTGAGGAAGA
AGGACTCGCTGGCCGGGTCAAAGGTGCTTTGCAAAGCTTGGTGAGCAGTG
GGAGCAATTCGAAGAGGATGGTGGCGGACAATACGAGTTCTGCCTTGGCA
GCGGTTGGGATTGGGACCACGGGTCGAGGAGAGGACAGCAACCGTGGTCG
AAAAATAGGTATCTCCCGACGGACCACCACGGACCGCGAGCTAGGAGACC
TAGACGCGTTTATTGAGGCAGAGATGGAGAGTGAAGCGCTCAGTGCGGGA
ATTGGGGACCAAAACTTCACATCTGTAAATGGGACGGGGCTGGTATTTTA
CATGGGTCCTGGTGGCACTTTATGTGGCATCCTGGCTTGGGGCCTGCCGC
CGCCTGCGACTTCCCAGAGAGAGGATAGGGACCCATTGGAGAAGGACGGC
CAATCCCCACAATCACCTCGCATTGGTGGTTTGGGGGCCATCGATCCAGT
GCTGGGCGGCGTTATTGAGCGTGCGCGTGCTGCTGTGGCGGATGGAGTGC
GTTCTGGTACGAGTTTCAAGTACGATATGAACAGCCGGCAGGACACGTTA
TTGGCATTGCGGGCGCTGGCCCTAGAAGTGGTTGGACCCGAGACTTTGGA
GCAGCTGGGTCCCAAGGCGCCTCTTTATACCTACACCAGCGCTAAAAGCT
TGTCTACTTCAAGTCATGACACTTTGTTCCGCATCAATAACCACACCAGA
TCCTCAGCAGATTTACTTGAAGAGGCATACGAAGCAGCTGTCAAGGGGCA
TATGCAGCCGACGCCAGGCACCAATGCGGTGCCTTTCCCTTTTAATCGCT
CTTGAAACTTGGAGTGGGAAGGCATTAGGAACTTATACATGTAAATTGGA
CTCAAATGATCACGAAATTACACCTATGCTACTGTTGATAGCATGCTCTT
CTTGTTCTCCTTCCCT
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protein sequence of jgi.p|Nanoce1779_2|603371

>mRNA_8621-protein ID=mRNA_8621-protein|Name=jgi.p|Nanoce1779_2|603371|organism=Nannochloropsis oceanica|type=polypeptide|length=632bp
MDADGKVLTLSDGSKLAFDKCLLAVGEGPVQVPSRFVDRVVASRVVSLYG
VEDRRALGRLVAQGHHVTIVGSNWASVELASFLSDVARRHGWGRTSVTLI
FPESTPLAKELPRYLSGLLLRRLERRGVDVIPHTCVKYIGRAMDYEVQSL
RSSLSAPANSVENSDTCSKGHSDVDNNHIQGDQEPTVSFDPVRVYLTSKF
ASLDSTALLTDQVVVGGSSPQGRLPILRFDGHPLEVDERTGGLVVSHELQ
ASSSVFVAGDAAFFPCTDMAKRITVRSADHAYHSGWVAGMNMAGRGVRYQ
HLPLFFGTIPRLGVRAAWVGQCDGSAETHGFWWKNNTNGGSSNSMARKRT
RMDPPPEAQAVEEEGLAGRVKGALQSLVSSGSNSKRMVADNTSSALAAVG
IGTTGRGEDSNRGRKIGISRRTTTDRELGDLDAFIEAEMESEALSAGIGD
QNFTSVNGTGLVFYMGPGGTLCGILAWGLPPPATSQREDRDPLEKDGQSP
QSPRIGGLGAIDPVLGGVIERARAAVADGVRSGTSFKYDMNSRQDTLLAL
RALALEVVGPETLEQLGPKAPLYTYTSAKSLSTSSHDTLFRINNHTRSSA
DLLEEAYEAAVKGHMQPTPGTNAVPFPFNRS*
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mRNA from alignment at scaffold_26:373020..375085-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Nanoce1779_2|603371|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp|location=Sequence derived from alignment at scaffold_26:373020..375085- (Nannochloropsis oceanica)
GGCGAGGGGTAGCTGCTGTACTCCGCGTGACGTACTTATGGGGAACGGCC
GTTGAATCCATGGATGCGGATGGCAAAGTCTTGACGTTGTCAGACGGCTC
GAAGCTGGCGTTTGACAAGTGCTTATTGGCGGTGGGGGAGGGACCTGTTC
AAGTACCCTCGAGATTCGTGGATCGCGTGGTGGCAAGCCGGGTCGTATCG
TTGTATGGCGTGGAGGACCGACGGGCATTAGGTCGATTGGTGGCGCAGGG
GCACCACGTGACCATCGTGGGCTCGAACTGGGCGAGTGTGGAGTTGGCCA
GCTTTCTGAGCGATGTGGCCCGGCGGCATGGCTGGGGTCGAACCAGCGTG
ACGTTAATATTTCCTGAATCTACGCCATTGGCGAAAGAACTGCCACGGTA
CTTGTCGGGGCTGTTGTTGCGGCGATTAGAACGGCGGGGCGTGGATGTCA
TTCCTCACACGTGTGTCAAATACATTGGCCGAGCGATGGACTATGAAGTG
CAGTCACTGCGATCTTCCCTATCTGCCCCAGCCAACAGTGTCGAAAATAG
TGATACATGCTCTAAAGGTCATTCTGATGTAGATAACAACCACATTCAAG
GAGATCAAGAGCCTACAGTTTCCTTTGACCCTGTCCGCGTGTATCTGACA
AGTAAATTTGCCAGTTTGGATTCGACGGCGCTCTTGACAGATCAAGTGGT
GGTTGGGGGATCTTCCCCGCAAGGGCGATTGCCCATTCTACGTTTTGATG
GTCATCCATTGGAGGTGGATGAGCGCACAGGTGGTCTTGTTGTTTCCCAC
GAATTGCAGGCCTCTAGCAGCGTTTTTGTTGCGGGAGATGCGGCCTTCTT
TCCTTGCACTGACATGGCGAAACGCATCACTGTGCGGTCTGCCGATCACG
CCTATCACTCGGGGTGGGTTGCAGGGATGAATATGGCGGGGCGAGGTGTC
CGCTACCAGCATTTGCCCTTGTTTTTCGGGACGATCCCACGGTTGGGCGT
ACGGGCGGCTTGGGTTGGGCAATGTGATGGGAGCGCTGAGACGCATGGGT
TTTGGTGGAAGAATAACACCAATGGCGGTAGCAGCAACAGCATGGCACGG
AAACGCACACGTATGGACCCGCCACCAGAGGCACAGGCTGTTGAGGAAGA
AGGACTCGCTGGCCGGGTCAAAGGTGCTTTGCAAAGCTTGGTGAGCAGTG
GGAGCAATTCGAAGAGGATGGTGGCGGACAATACGAGTTCTGCCTTGGCA
GCGGTTGGGATTGGGACCACGGGTCGAGGAGAGGACAGCAACCGTGGTCG
AAAAATAGGTATCTCCCGACGGACCACCACGGACCGCGAGCTAGGAGACC
TAGACGCGTTTATTGAGGCAGAGATGGAGAGTGAAGCGCTCAGTGCGGGA
ATTGGGGACCAAAACTTCACATCTGTAAATGGGACGGGGCTGGTATTTTA
CATGGGTCCTGGTGGCACTTTATGTGGCATCCTGGCTTGGGGCCTGCCGC
CGCCTGCGACTTCCCAGAGAGAGGATAGGGACCCATTGGAGAAGGACGGC
CAATCCCCACAATCACCTCGCATTGGTGGTTTGGGGGCCATCGATCCAGT
GCTGGGCGGCGTTATTGAGCGTGCGCGTGCTGCTGTGGCGGATGGAGTGC
GTTCTGGTACGAGTTTCAAGTACGATATGAACAGCCGGCAGGACACGTTA
TTGGCATTGCGGGCGCTGGCCCTAGAAGTGGTTGGACCCGAGACTTTGGA
GCAGCTGGGTCCCAAGGCGCCTCTTTATACCTACACCAGCGCTAAAAGCT
TGTCTACTTCAAGTCATGACACTTTGTTCCGCATCAATAACCACACCAGA
TCCTCAGCAGATTTACTTGAAGAGGCATACGAAGCAGCTGTCAAGGGGCA
TATGCAGCCGACGCCAGGCACCAATGCGGTGCCTTTCCCTTTTAATCGCT
CTTGAAACTTGGAGTGGGAAGGCATTAGGAACTTATACATGTAAATTGGA
CTCAAATGATCACGAAATTACACCTATGCTACTGTTGATAGCATGCTCTT
CTTGTTCTCCTTCCCT
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Coding sequence (CDS) from alignment at scaffold_26:373020..375085-

>mRNA_8621 ID=mRNA_8621|Name=jgi.p|Nanoce1779_2|603371|organism=Nannochloropsis oceanica|type=CDS|length=1896bp|location=Sequence derived from alignment at scaffold_26:373020..375085- (Nannochloropsis oceanica)
ATGGATGCGGATGGCAAAGTCTTGACGTTGTCAGACGGCTCGAAGCTGGC
GTTTGACAAGTGCTTATTGGCGGTGGGGGAGGGACCTGTTCAAGTACCCT
CGAGATTCGTGGATCGCGTGGTGGCAAGCCGGGTCGTATCGTTGTATGGC
GTGGAGGACCGACGGGCATTAGGTCGATTGGTGGCGCAGGGGCACCACGT
GACCATCGTGGGCTCGAACTGGGCGAGTGTGGAGTTGGCCAGCTTTCTGA
GCGATGTGGCCCGGCGGCATGGCTGGGGTCGAACCAGCGTGACGTTAATA
TTTCCTGAATCTACGCCATTGGCGAAAGAACTGCCACGGTACTTGTCGGG
GCTGTTGTTGCGGCGATTAGAACGGCGGGGCGTGGATGTCATTCCTCACA
CGTGTGTCAAATACATTGGCCGAGCGATGGACTATGAAGTGCAGTCACTG
CGATCTTCCCTATCTGCCCCAGCCAACAGTGTCGAAAATAGTGATACATG
CTCTAAAGGTCATTCTGATGTAGATAACAACCACATTCAAGGAGATCAAG
AGCCTACAGTTTCCTTTGACCCTGTCCGCGTGTATCTGACAAGTAAATTT
GCCAGTTTGGATTCGACGGCGCTCTTGACAGATCAAGTGGTGGTTGGGGG
ATCTTCCCCGCAAGGGCGATTGCCCATTCTACGTTTTGATGGTCATCCAT
TGGAGGTGGATGAGCGCACAGGTGGTCTTGTTGTTTCCCACGAATTGCAG
GCCTCTAGCAGCGTTTTTGTTGCGGGAGATGCGGCCTTCTTTCCTTGCAC
TGACATGGCGAAACGCATCACTGTGCGGTCTGCCGATCACGCCTATCACT
CGGGGTGGGTTGCAGGGATGAATATGGCGGGGCGAGGTGTCCGCTACCAG
CATTTGCCCTTGTTTTTCGGGACGATCCCACGGTTGGGCGTACGGGCGGC
TTGGGTTGGGCAATGTGATGGGAGCGCTGAGACGCATGGGTTTTGGTGGA
AGAATAACACCAATGGCGGTAGCAGCAACAGCATGGCACGGAAACGCACA
CGTATGGACCCGCCACCAGAGGCACAGGCTGTTGAGGAAGAAGGACTCGC
TGGCCGGGTCAAAGGTGCTTTGCAAAGCTTGGTGAGCAGTGGGAGCAATT
CGAAGAGGATGGTGGCGGACAATACGAGTTCTGCCTTGGCAGCGGTTGGG
ATTGGGACCACGGGTCGAGGAGAGGACAGCAACCGTGGTCGAAAAATAGG
TATCTCCCGACGGACCACCACGGACCGCGAGCTAGGAGACCTAGACGCGT
TTATTGAGGCAGAGATGGAGAGTGAAGCGCTCAGTGCGGGAATTGGGGAC
CAAAACTTCACATCTGTAAATGGGACGGGGCTGGTATTTTACATGGGTCC
TGGTGGCACTTTATGTGGCATCCTGGCTTGGGGCCTGCCGCCGCCTGCGA
CTTCCCAGAGAGAGGATAGGGACCCATTGGAGAAGGACGGCCAATCCCCA
CAATCACCTCGCATTGGTGGTTTGGGGGCCATCGATCCAGTGCTGGGCGG
CGTTATTGAGCGTGCGCGTGCTGCTGTGGCGGATGGAGTGCGTTCTGGTA
CGAGTTTCAAGTACGATATGAACAGCCGGCAGGACACGTTATTGGCATTG
CGGGCGCTGGCCCTAGAAGTGGTTGGACCCGAGACTTTGGAGCAGCTGGG
TCCCAAGGCGCCTCTTTATACCTACACCAGCGCTAAAAGCTTGTCTACTT
CAAGTCATGACACTTTGTTCCGCATCAATAACCACACCAGATCCTCAGCA
GATTTACTTGAAGAGGCATACGAAGCAGCTGTCAAGGGGCATATGCAGCC
GACGCCAGGCACCAATGCGGTGCCTTTCCCTTTTAATCGCTCTTGA
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Synonyms
Publications