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Properties
| Property Name | Value |
|---|
| TranscriptId | 236746 |
| Track | FilteredModels2 |
| ProteinId | 236660 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:794385..796250 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_321 ID=mRNA_321|Name=jgi.p|Nanoce1779_2|236660|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp
TCCAAACGCATTTCGTGAGATTACCATTAAATCTGCCAACATCCATTTCC
ATTATACAACACTGGTGAATCACATAGCTATGGACGGGGAGCAAGATGTG
GGGTCCCTGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTATCAGCTAA
ATGGGCCGCCCTTCTGCGCTTGATCACCACCGACGCTGCTACCAAAGATG
GCATTAAAGCCTTGGCCGAGATGTATGGACGTATATTTAAGGACAAGGAT
GCTCTGGTGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAGCAGGAAAT
GCAGGCCGCCTACGAGGCGCACGTCCGGCAACGTAATTCTTTGCTCGCAT
TCCACCGTGCGCACACAACTACACTTGAGGGAGGTTTCACCCGCGACCTC
GAGGCCATGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTAGCAAAACA
ACATGCAGAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATCCATCGAGG
CCTACGAAAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAGCCAACGTG
CGGGAAATTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAGCTCCGCCA
AAATCTTACGTCGCAAATCGACGCTTTACTTCAACACTTGCAGGACAAGG
CACCGGCCTTTACTTCTGCAGCCACGGGAATGACAGGAACGGTGACAACG
GCGACAGGCACCACTGGCGCCATTGAGACGGAAGCCAAGGCTATGGCGAT
CAAGGATCAATCACTGACGACTCTTATCGAGGCGAAAGTACGAAAGATCG
ACCAGGAGCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGACGACCAGC
GGGAAGGAGCACAGCGATCGGAATCAGGCTTTGATAAACGAAAAGCGGGC
CCTACTTGACCAGCATCGAAAACTTAAGTTGCACATGAACAAACACCGCC
AGAATCAGCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAAATGGAGCC
AAGGAAGATTTGAGCGCGCAGATTGAGCTTGGCCTACGGGTACTGAACCT
GGCAGAATTAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCATTGTCTC
GCCTGCAAGGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCCTGGTGCC
ACCACCAACAGTATCAGCAACACCAACAACAGCGGCGAGGGCGTGGCCGC
ATCGACCGAAAATCCTTTGAATAGCTTTTGTAGACGGTACAACCAATCAT
TGTTAGGAAAGGTTGCCCTTCACGAACGACGGGATACTCTGCTGGAAGAG
AATCGAATGTTGCAGCTCGCCATCCAGCAGTACTTGGACGGGGTGACTGT
CAATGATGGTATCCTCAATGGGAGTAATCCCCTTCTCGTCGTAAAACCAA
AGACCAAGACCCCGCCTCGCCCACCTCGTCGCCACGACGGCAGCAGCAAC
GGCAGCAGCAGCAGCAGCAGTAGCCACCCTCGAAAGGGGCACCACCCCTG
CGTGATTGAAGGCAACCACATGCTCCAGACCGGCCGGTTGAACACCGCGC
CTTTTTTTGTATAGACGTTGCGGGGGAGGAATATTGGGCGTTATCAGAGG
AAGCAAGGAACAGGAAAGGTAATGATTAAACAATATTCTAAGTAGTTA back to topprotein sequence of jgi.p|Nanoce1779_2|236660 >mRNA_321-protein ID=mRNA_321-protein|Name=jgi.p|Nanoce1779_2|236660|organism=Nannochloropsis oceanica|type=polypeptide|length=495bp
MDGEQDVGSLSLSSPSAPAKLSAKWAALLRLITTDAATKDGIKALAEMYG
RIFKDKDALVRMLMADAKASEQEMQAAYEAHVRQRNSLLAFHRAHTTTLE
GGFTRDLEAMKNEFQTEAALLAKQHAEEQSGLSQLLQSIEAYEKGKQQER
QELQANVREILKRQGQEQIVKLRQNLTSQIDALLQHLQDKAPAFTSAATG
MTGTVTTATGTTGAIETEAKAMAIKDQSLTTLIEAKVRKIDQELQRWKEW
RVNMTTSGKEHSDRNQALINEKRALLDQHRKLKLHMNKHRQNQQKTLKAL
DEDANGAKEDLSAQIELGLRVLNLAELAYKKELEQKGALSRLQGSLVEGT
LFHPPGATTNSISNTNNSGEGVAASTENPLNSFCRRYNQSLLGKVALHER
RDTLLEENRMLQLAIQQYLDGVTVNDGILNGSNPLLVVKPKTKTPPRPPR
RHDGSSNGSSSSSSSHPRKGHHPCVIEGNHMLQTGRLNTAPFFV* back to topmRNA from alignment at scaffold_3:794385..796250- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_321 ID=mRNA_321|Name=jgi.p|Nanoce1779_2|236660|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_3:794385..796250- (Nannochloropsis oceanica)
TCCAAACGCATTTCGTGAGATTACCATTAAATCTGCCAACATCCATTTCC
ATTATACAACACTGGTGAATCACATAGCTATGGACGGGGAGCAAGATGTG
GGGTCCCTGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTATCAGCTAA
ATGGGCCGCCCTTCTGCGCTTGATCACCACCGACGCTGCTACCAAAGATG
GCATTAAAGCCTTGGCCGAGATGTATGGACGTATATTTAAGGACAAGGAT
GCTCTGGTGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAGCAGGAAAT
GCAGGCCGCCTACGAGGCGCACGTCCGGCAACGTAATTCTTTGCTCGCAT
TCCACCGTGCGCACACAACTACACTTGAGGGAGGTTTCACCCGCGACCTC
GAGGCCATGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTAGCAAAACA
ACATGCAGAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATCCATCGAGG
CCTACGAAAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAGCCAACGTG
CGGGAAATTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAGCTCCGCCA
AAATCTTACGTCGCAAATCGACGCTTTACTTCAACACTTGCAGGACAAGG
CACCGGCCTTTACTTCTGCAGCCACGGGAATGACAGGAACGGTGACAACG
GCGACAGGCACCACTGGCGCCATTGAGACGGAAGCCAAGGCTATGGCGAT
CAAGGATCAATCACTGACGACTCTTATCGAGGCGAAAGTACGAAAGATCG
ACCAGGAGCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGACGACCAGC
GGGAAGGAGCACAGCGATCGGAATCAGGCTTTGATAAACGAAAAGCGGGC
CCTACTTGACCAGCATCGAAAACTTAAGTTGCACATGAACAAACACCGCC
AGAATCAGCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAAATGGAGCC
AAGGAAGATTTGAGCGCGCAGATTGAGGTGAGTGTGTGTATGTGTGAGGG
AAAAGACCTTAGTTGTCAATATTACCCCTACACACCGTATTTTATGAGCT
CATCTTCCATATCTCTACATTAGCTTGGCCTACGGGTACTGAACCTGGCA
GAATTAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCATTGTCTCGCCT
GCAAGGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCCTGGTGCCACCA
CCAACAGTATCAGCAACACCAACAACAGCGGCGAGGGCGTGGCCGCATCG
ACCGAAAATCCTTTGAATAGCTTTTGTAGACGGTACAACCAATCATTGTT
AGGAAAGGTTGCCCTTCACGAACGACGGGATACTCTGCTGGAAGAGAATC
GAATGTTGCAGGTAAGACAAAGGAAAGAAGTGGGAAAGAACAGAAGAGAA
AGTGCAATGATTGTACAAAAGCGGGAAACTTCCCATCATCAAGACAATCT
GAAACCACTCTCAATCTCTTTTTGCAACTACAGCTCGCCATCCAGCAGTA
CTTGGACGGGGTGACTGTCAATGATGGTATCCTCAATGGGAGTAATCCCC
TTCTCGTCGTAAAACCAAAGACCAAGACCCCGCCTCGCCCACCTCGTCGC
CACGACGGCAGCAGCAACGGCAGCAGCAGCAGCAGCAGTAGCCACCCTCG
AAAGGGGCACCACCCCTGCGTGATTGAAGGCAACCACATGCTCCAGACCG
GCCGGTTGAACACCGCGCCTTTTTTTGTATAGACGTTGCGGGGGAGGAAT
ATTGGGCGTTATCAGAGGAAGCAAGGAACAGGAAAGGTAATGATTAAACA
ATATTCTAAGTAGTTA back to topCoding sequence (CDS) from alignment at scaffold_3:794385..796250- >mRNA_321 ID=mRNA_321|Name=jgi.p|Nanoce1779_2|236660|organism=Nannochloropsis oceanica|type=CDS|length=4455bp|location=Sequence derived from alignment at scaffold_3:794385..796250- (Nannochloropsis oceanica)
CTCGCCATCCAGCAGTACTTGGACGGGGTGACTGTCAATGATGGTATCCT
CAATGGGAGTAATCCCCTTCTCGTCGTAAAACCAAAGACCAAGACCCCGC
CTCGCCCACCTCGTCGCCACGACGGCAGCAGCAACGGCAGCAGCAGCAGC
AGCAGTAGCCACCCTCGAAAGGGGCACCACCCCTGCGTGATTGAAGGCAA
CCACATGCTCCAGACCGGCCGGTTGAACACCGCGCCTTTTTTTGTATAGC
TTGGCCTACGGGTACTGAACCTGGCAGAATTAGCATACAAGAAGGAATTG
GAGCAAAAAGGTGCATTGTCTCGCCTGCAAGGCTCATTGGTCGAAGGCAC
TCTTTTTCATCCTCCTGGTGCCACCACCAACAGTATCAGCAACACCAACA
ACAGCGGCGAGGGCGTGGCCGCATCGACCGAAAATCCTTTGAATAGCTTT
TGTAGACGGTACAACCAATCATTGTTAGGAAAGGTTGCCCTTCACGAACG
ACGGGATACTCTGCTGGAAGAGAATCGAATGTTGCAGATGGACGGGGAGC
AAGATGTGGGGTCCCTGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTA
TCAGCTAAATGGGCCGCCCTTCTGCGCTTGATCACCACCGACGCTGCTAC
CAAAGATGGCATTAAAGCCTTGGCCGAGATGTATGGACGTATATTTAAGG
ACAAGGATGCTCTGGTGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAG
CAGGAAATGCAGGCCGCCTACGAGGCGCACGTCCGGCAACGTAATTCTTT
GCTCGCATTCCACCGTGCGCACACAACTACACTTGAGGGAGGTTTCACCC
GCGACCTCGAGGCCATGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTA
GCAAAACAACATGCAGAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATC
CATCGAGGCCTACGAAAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAG
CCAACGTGCGGGAAATTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAG
CTCCGCCAAAATCTTACGTCGCAAATCGACGCTTTACTTCAACACTTGCA
GGACAAGGCACCGGCCTTTACTTCTGCAGCCACGGGAATGACAGGAACGG
TGACAACGGCGACAGGCACCACTGGCGCCATTGAGACGGAAGCCAAGGCT
ATGGCGATCAAGGATCAATCACTGACGACTCTTATCGAGGCGAAAGTACG
AAAGATCGACCAGGAGCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGA
CGACCAGCGGGAAGGAGCACAGCGATCGGAATCAGGCTTTGATAAACGAA
AAGCGGGCCCTACTTGACCAGCATCGAAAACTTAAGTTGCACATGAACAA
ACACCGCCAGAATCAGCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAA
ATGGAGCCAAGGAAGATTTGAGCGCGCAGATTGAGCTCGCCATCCAGCAG
TACTTGGACGGGGTGACTGTCAATGATGGTATCCTCAATGGGAGTAATCC
CCTTCTCGTCGTAAAACCAAAGACCAAGACCCCGCCTCGCCCACCTCGTC
GCCACGACGGCAGCAGCAACGGCAGCAGCAGCAGCAGCAGTAGCCACCCT
CGAAAGGGGCACCACCCCTGCGTGATTGAAGGCAACCACATGCTCCAGAC
CGGCCGGTTGAACACCGCGCCTTTTTTTGTATAGCTTGGCCTACGGGTAC
TGAACCTGGCAGAATTAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCA
TTGTCTCGCCTGCAAGGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCC
TGGTGCCACCACCAACAGTATCAGCAACACCAACAACAGCGGCGAGGGCG
TGGCCGCATCGACCGAAAATCCTTTGAATAGCTTTTGTAGACGGTACAAC
CAATCATTGTTAGGAAAGGTTGCCCTTCACGAACGACGGGATACTCTGCT
GGAAGAGAATCGAATGTTGCAGATGGACGGGGAGCAAGATGTGGGGTCCC
TGTCGCTATCGTCTCCATCCGCCCCCGCGAAACTATCAGCTAAATGGGCC
GCCCTTCTGCGCTTGATCACCACCGACGCTGCTACCAAAGATGGCATTAA
AGCCTTGGCCGAGATGTATGGACGTATATTTAAGGACAAGGATGCTCTGG
TGCGGATGCTGATGGCTGATGCGAAGGCCTCGGAGCAGGAAATGCAGGCC
GCCTACGAGGCGCACGTCCGGCAACGTAATTCTTTGCTCGCATTCCACCG
TGCGCACACAACTACACTTGAGGGAGGTTTCACCCGCGACCTCGAGGCCA
TGAAAAATGAGTTTCAGACGGAAGCTGCGCTTTTAGCAAAACAACATGCA
GAGGAGCAAAGTGGGCTCAGCCAGCTGCTGCAATCCATCGAGGCCTACGA
AAAGGGCAAGCAGCAGGAGCGCCAAGAGCTGCAAGCCAACGTGCGGGAAA
TTTTGAAGCGACAGGGCCAAGAGCAAATAGTTAAGCTCCGCCAAAATCTT
ACGTCGCAAATCGACGCTTTACTTCAACACTTGCAGGACAAGGCACCGGC
CTTTACTTCTGCAGCCACGGGAATGACAGGAACGGTGACAACGGCGACAG
GCACCACTGGCGCCATTGAGACGGAAGCCAAGGCTATGGCGATCAAGGAT
CAATCACTGACGACTCTTATCGAGGCGAAAGTACGAAAGATCGACCAGGA
GCTCCAAAGGTGGAAGGAGTGGCGGGTAAATATGACGACCAGCGGGAAGG
AGCACAGCGATCGGAATCAGGCTTTGATAAACGAAAAGCGGGCCCTACTT
GACCAGCATCGAAAACTTAAGTTGCACATGAACAAACACCGCCAGAATCA
GCAAAAGACCTTGAAGGCCTTGGATGAGGACGCAAATGGAGCCAAGGAAG
ATTTGAGCGCGCAGATTGAGCTCGCCATCCAGCAGTACTTGGACGGGGTG
ACTGTCAATGATGGTATCCTCAATGGGAGTAATCCCCTTCTCGTCGTAAA
ACCAAAGACCAAGACCCCGCCTCGCCCACCTCGTCGCCACGACGGCAGCA
GCAACGGCAGCAGCAGCAGCAGCAGTAGCCACCCTCGAAAGGGGCACCAC
CCCTGCGTGATTGAAGGCAACCACATGCTCCAGACCGGCCGGTTGAACAC
CGCGCCTTTTTTTGTATAGCTTGGCCTACGGGTACTGAACCTGGCAGAAT
TAGCATACAAGAAGGAATTGGAGCAAAAAGGTGCATTGTCTCGCCTGCAA
GGCTCATTGGTCGAAGGCACTCTTTTTCATCCTCCTGGTGCCACCACCAA
CAGTATCAGCAACACCAACAACAGCGGCGAGGGCGTGGCCGCATCGACCG
AAAATCCTTTGAATAGCTTTTGTAGACGGTACAACCAATCATTGTTAGGA
AAGGTTGCCCTTCACGAACGACGGGATACTCTGCTGGAAGAGAATCGAAT
GTTGCAGATGGACGGGGAGCAAGATGTGGGGTCCCTGTCGCTATCGTCTC
CATCCGCCCCCGCGAAACTATCAGCTAAATGGGCCGCCCTTCTGCGCTTG
ATCACCACCGACGCTGCTACCAAAGATGGCATTAAAGCCTTGGCCGAGAT
GTATGGACGTATATTTAAGGACAAGGATGCTCTGGTGCGGATGCTGATGG
CTGATGCGAAGGCCTCGGAGCAGGAAATGCAGGCCGCCTACGAGGCGCAC
GTCCGGCAACGTAATTCTTTGCTCGCATTCCACCGTGCGCACACAACTAC
ACTTGAGGGAGGTTTCACCCGCGACCTCGAGGCCATGAAAAATGAGTTTC
AGACGGAAGCTGCGCTTTTAGCAAAACAACATGCAGAGGAGCAAAGTGGG
CTCAGCCAGCTGCTGCAATCCATCGAGGCCTACGAAAAGGGCAAGCAGCA
GGAGCGCCAAGAGCTGCAAGCCAACGTGCGGGAAATTTTGAAGCGACAGG
GCCAAGAGCAAATAGTTAAGCTCCGCCAAAATCTTACGTCGCAAATCGAC
GCTTTACTTCAACACTTGCAGGACAAGGCACCGGCCTTTACTTCTGCAGC
CACGGGAATGACAGGAACGGTGACAACGGCGACAGGCACCACTGGCGCCA
TTGAGACGGAAGCCAAGGCTATGGCGATCAAGGATCAATCACTGACGACT
CTTATCGAGGCGAAAGTACGAAAGATCGACCAGGAGCTCCAAAGGTGGAA
GGAGTGGCGGGTAAATATGACGACCAGCGGGAAGGAGCACAGCGATCGGA
ATCAGGCTTTGATAAACGAAAAGCGGGCCCTACTTGACCAGCATCGAAAA
CTTAAGTTGCACATGAACAAACACCGCCAGAATCAGCAAAAGACCTTGAA
GGCCTTGGATGAGGACGCAAATGGAGCCAAGGAAGATTTGAGCGCGCAGA
TTGAG back to top
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