jgi.p|Nanoce1779_2|576024, mRNA_49 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576024
Unique NamemRNA_49
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length790
Alignment locationscaffold_3:136751..137769 +

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Properties
Property NameValue
TranscriptId576110
TrackFilteredModels2
ProteinId576024
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:136751..137769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576024gene_49Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576024mRNA_49-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_49CDS_49Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_49 ID=mRNA_49|Name=jgi.p|Nanoce1779_2|576024|organism=Nannochloropsis oceanica|type=mRNA|length=790bp
GTTAGAAAAGCGGGTAGAGCCAACAGGAAAAGGCACAGCAGGCAGCGAAT
AGATTTAAATAGCTGCTGCTTCTTCCCAGGCGTCGTTCAGTCTACAGCGG
GGCAGGTGGGCAAGGGGAAAAGGAAGAACACTACTTTTGCGGCGATTGGA
AGCCCGACTACACGCCTCACTATCTCTGAGCAACACCAAAGTAGCCATGC
AAACAGTCAGATCTTATGAGAACTGGTCATTCATCCCAATGGCTGCCTGC
CTTTCGATCGACCCGTTTGGATTTAGAAATATTTCTGGGTGAGACGATGG
CCCACTACCTCCCCACCACAGCCTTCAGCCTTGCCAACCACACACACCAT
TTCTCATTCCCACTCTATTCCAATTTAGGCCGTATTCTGCACCTCACCAC
TAATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTG
GTGGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGAGA
CACCGAGCCCGATCTGCCCTTCATGCGTCACCTCCTTCCCACCCTCTCCT
TCCCCTGTCTTCGCTCCGCCGCCAAAGATTTGGGATTAGACGTCGCTGCG
TTTCCTGAATCACTTACTGAGGCCTTGGCACAGGATGAGGAGTTCTTGAA
GGCATTGCACAAGACGCTGTTTGACGTGCATGTGCTGGAAGGGGCGCTGA
TCTGTCCGGAGACGGGAAGGCGATTTTCCATCGTCGGGGGTGTTGTCGAT
ATGATGATGAAGGACGAGGAGGTGGTTTGAAGGGACGGAG
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protein sequence of jgi.p|Nanoce1779_2|576024

>mRNA_49-protein ID=mRNA_49-protein|Name=jgi.p|Nanoce1779_2|576024|organism=Nannochloropsis oceanica|type=polypeptide|length=126bp
MRLLSHNVLRNTAKGVVEGFPLKIEAQQIEVRDTEPDLPFMRHLLPTLSF
PCLRSAAKDLGLDVAAFPESLTEALAQDEEFLKALHKTLFDVHVLEGALI
CPETGRRFSIVGGVVDMMMKDEEVV*
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mRNA from alignment at scaffold_3:136751..137769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_49 ID=mRNA_49|Name=jgi.p|Nanoce1779_2|576024|organism=Nannochloropsis oceanica|type=mRNA|length=1019bp|location=Sequence derived from alignment at scaffold_3:136751..137769+ (Nannochloropsis oceanica)
GTTAGAAAAGCGGGTAGAGCCAACAGGAAAAGGCACAGCAGGCAGCGAAT
AGATTTAAATAGCTGCTGCTTCTTCCCAGGCGTCGTTCAGTCTACAGCGG
GGCAGGTGGGCAAGGGGAAAAGGAAGAACACTACTTTTGCGGCGATTGGA
AGCCCGACTACACGCCTCACTATCTCTGAGCAACACCAAAGTAGCCATGC
AAACAGTCAGATCTTATGAGAACTGGTCATTCATCCCAATGGCTGCCTGC
CTTTCGATCGACCCGTTTGGATTTAGAAATATTTCTGGGTGAGACGATGG
CCCACTACCTCCCCACCACAGCCTTCAGCCTTGCCAACCACACACACCAT
TTCTCATTCCCACTCTATTCCAATTTAGGCCGTATTCTGCACCTCACCAC
TAATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTG
GTGGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGTAT
GGTGGCCGCTCTGCTCCCTATCGACCTTCCAACCCGACTCTCTTCCACCA
AGCCCCCCCGCTTTTCCTTCCTCTCGGACAGCACGGCCGTCCAGCCATCG
TATCTTTTATTGTCTTTCAATCCATGCCTCCCGCGCGATTGTTTACAACA
GCTATTCATAGGACCCGCTTCATTCCTATTCCAATCATCCATCTTCCCCA
TCCCACCCTAAACCCAACCAGGTACGAGACACCGAGCCCGATCTGCCCTT
CATGCGTCACCTCCTTCCCACCCTCTCCTTCCCCTGTCTTCGCTCCGCCG
CCAAAGATTTGGGATTAGACGTCGCTGCGTTTCCTGAATCACTTACTGAG
GCCTTGGCACAGGATGAGGAGTTCTTGAAGGCATTGCACAAGACGCTGTT
TGACGTGCATGTGCTGGAAGGGGCGCTGATCTGTCCGGAGACGGGAAGGC
GATTTTCCATCGTCGGGGGTGTTGTCGATATGATGATGAAGGACGAGGAG
GTGGTTTGAAGGGACGGAG
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Coding sequence (CDS) from alignment at scaffold_3:136751..137769+

>mRNA_49 ID=mRNA_49|Name=jgi.p|Nanoce1779_2|576024|organism=Nannochloropsis oceanica|type=CDS|length=756bp|location=Sequence derived from alignment at scaffold_3:136751..137769+ (Nannochloropsis oceanica)
ATGCGCCTCCTCAGCCACAATGTCCTGCGCAACACGGCCAAGGGTGTGGT
GGAAGGTTTCCCACTCAAAATCGAGGCCCAGCAAATAGAAGTACGAGACA
CCGAGCCCGATCTGCCCTTCATGCGTCACCTCCTTCCCACCCTCTCCTTC
CCCTGTCTTCGCTCCGCCGCCAAAGATTTGGGATTAGACGTCGCTGCGTT
TCCTGAATCACTTACTGAGGCCTTGGCACAGGATGAGGAGTTCTTGAAGG
CATTGCACAAGACGCTGTTTGACGTGCATGTGCTGGAAGGGGCGCTGATC
TGTCCGGAGACGGGAAGGCGATTTTCCATCGTCGGGGGTGTTGTCGATAT
GATGATGAAGGACGAGGAGGTGGTTTGAATGCGCCTCCTCAGCCACAATG
TCCTGCGCAACACGGCCAAGGGTGTGGTGGAAGGTTTCCCACTCAAAATC
GAGGCCCAGCAAATAGAAGTACGAGACACCGAGCCCGATCTGCCCTTCAT
GCGTCACCTCCTTCCCACCCTCTCCTTCCCCTGTCTTCGCTCCGCCGCCA
AAGATTTGGGATTAGACGTCGCTGCGTTTCCTGAATCACTTACTGAGGCC
TTGGCACAGGATGAGGAGTTCTTGAAGGCATTGCACAAGACGCTGTTTGA
CGTGCATGTGCTGGAAGGGGCGCTGATCTGTCCGGAGACGGGAAGGCGAT
TTTCCATCGTCGGGGGTGTTGTCGATATGATGATGAAGGACGAGGAGGTG
GTTTGA
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Synonyms
Publications