jgi.p|Nanoce1779_2|576587, mRNA_220 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576587
Unique NamemRNA_220
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length751
Alignment locationscaffold_3:553850..554850 -

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Properties
Property NameValue
TranscriptId576673
TrackFilteredModels2
ProteinId576587
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:553850..554850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576587gene_220Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576587mRNA_220-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_220CDS_220Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_220 ID=mRNA_220|Name=jgi.p|Nanoce1779_2|576587|organism=Nannochloropsis oceanica|type=mRNA|length=751bp
ACAGGCACACAGGCATTAAGCACACCATGAGCACCGAACGCACGTACATT
ATGATAAAACCCGATGGTGTTCAACGGGGCTTGGTCGGAGAAATCATCGC
GCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCGCTCAAGTCGCTCAATG
CTTCCAAGGACCTTTTGAATGAGCACTACCAGGATTTGGCTGACAAGCCC
TTTTTTGCCGGTCTCGTCACTTACATGAGCTCGGGCCCTGTCATCGCCAT
GGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGCCGCAAGATGCTTGGTG
CCACCAAGCCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCC
CTTGACGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTCGAGTCTGC
TCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGAATGGAATG
CAAACAACTACTCTTGGGTGTACGAGAAGTAAAGTGGCCGGACCTTTCAA
TCTCGTCACTGTCGTCGACGACGTAATCCGCAGCCGGTTCTCAGGAAAGA
ACTGAGTAGAAACTTAAGAGCCCACAATGGAGCGTGTCCTCTGGAATGAA
AGCACGGGGAAGAGGGAGTTGGAGGTTTGTTTGACTGGGTTAAAGCTTAA
GGTCGGAGTGAAAACGGAAGACGGCAACTCGCTCCTAAAGCAGGGAGATG
ATAGGCGCGGTGAGGGACTAAGAAAACTCGATTTGAAAACAAGGCATGAC
A
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protein sequence of jgi.p|Nanoce1779_2|576587

>mRNA_220-protein ID=mRNA_220-protein|Name=jgi.p|Nanoce1779_2|576587|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MSTERTYIMIKPDGVQRGLVGEIIARFERKGFKLVALKSLNASKDLLNEH
YQDLADKPFFAGLVTYMSSGPVIAMVWEGLNAVKEGRKMLGATKPSDSAP
GTIRGDFALDVGRNICHGSDSVESAQREIGLWFGEGLAEWNANNYSWVYE
K*
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mRNA from alignment at scaffold_3:553850..554850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_220 ID=mRNA_220|Name=jgi.p|Nanoce1779_2|576587|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_3:553850..554850- (Nannochloropsis oceanica)
ACAGGCACACAGGCATTAAGCACACCATGAGCACCGAACGCACGTACATT
ATGATAAAACCCGATGGTGTTCAACGGGGCTTGGTCGGAGAAATCATCGC
GCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCGCTCAAGTCGCTCAATG
CTTCCAAGGACCTTTTGAATGAGCACTACCAGGATTTGGCTGACAAGCCC
TTTTTTGCCGGTCTCGTCACTTACATGAGCTCGGGCCCTGTCATCGCCAT
GGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGCCGCAAGGTATGCATCG
GGTCATTCTCTCTTCAGTTCTCAGCTTTCGATCCTTATCACTCTTGCTCT
ATTTTGATATATCCTCTTTTGCTCTCATCACTGTTTGATTCCGCCTTGGC
TGATCCCTCTTCCGTTCTCATCTTTCACTCAGATGCTTGGTGCCACCAAG
CCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCCCTTGACGT
AAGTGTGCTTTGATATCTTCGATTGTCTGTGTATCGTCCCATCTTGATAC
ATTTTGTGCAAACCTCTCACTTTACAACCGAACGTATTTTTTCGACATCC
CTGTAGGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTCGAGTCTGC
TCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGAATGGAATG
CAAACAACTACTCTTGGGTGTACGAGAAGTAAAGTGGCCGGACCTTTCAA
TCTCGTCACTGTCGTCGACGACGTAATCCGCAGCCGGTTCTCAGGAAAGA
ACTGAGTAGAAACTTAAGAGCCCACAATGGAGCGTGTCCTCTGGAATGAA
AGCACGGGGAAGAGGGAGTTGGAGGTTTGTTTGACTGGGTTAAAGCTTAA
GGTCGGAGTGAAAACGGAAGACGGCAACTCGCTCCTAAAGCAGGGAGATG
ATAGGCGCGGTGAGGGACTAAGAAAACTCGATTTGAAAACAAGGCATGAC
A
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Coding sequence (CDS) from alignment at scaffold_3:553850..554850-

>mRNA_220 ID=mRNA_220|Name=jgi.p|Nanoce1779_2|576587|organism=Nannochloropsis oceanica|type=CDS|length=1368bp|location=Sequence derived from alignment at scaffold_3:553850..554850- (Nannochloropsis oceanica)
GTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTCGAGTCTGCTCAGCG
AGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGAATGGAATGCAAACA
ACTACTCTTGGGTGTACGAGAAGTAAATGCTTGGTGCCACCAAGCCGTCC
GACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCCCTTGACATGAGCAC
CGAACGCACGTACATTATGATAAAACCCGATGGTGTTCAACGGGGCTTGG
TCGGAGAAATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTTGTGGCG
CTCAAGTCGCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTACCAGGA
TTTGGCTGACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGAGCTCGG
GCCCTGTCATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAGGAGGGC
CGCAAGGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTCGAGTCTGC
TCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGAATGGAATG
CAAACAACTACTCTTGGGTGTACGAGAAGTAAATGCTTGGTGCCACCAAG
CCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCCCTTGACAT
GAGCACCGAACGCACGTACATTATGATAAAACCCGATGGTGTTCAACGGG
GCTTGGTCGGAGAAATCATCGCGCGCTTCGAGCGCAAGGGTTTCAAGCTT
GTGGCGCTCAAGTCGCTCAATGCTTCCAAGGACCTTTTGAATGAGCACTA
CCAGGATTTGGCTGACAAGCCCTTTTTTGCCGGTCTCGTCACTTACATGA
GCTCGGGCCCTGTCATCGCCATGGTCTGGGAGGGCCTGAACGCTGTCAAG
GAGGGCCGCAAGGTGGGCCGCAATATCTGTCACGGCTCTGACTCCGTCGA
GTCTGCTCAGCGAGAGATCGGCCTCTGGTTTGGCGAGGGCTTGGCTGAAT
GGAATGCAAACAACTACTCTTGGGTGTACGAGAAGTAAATGCTTGGTGCC
ACCAAGCCGTCCGACAGCGCCCCTGGCACGATCCGCGGCGACTTTGCCCT
TGACATGAGCACCGAACGCACGTACATTATGATAAAACCCGATGGTGTTC
AACGGGGCTTGGTCGGAGAAATCATCGCGCGCTTCGAGCGCAAGGGTTTC
AAGCTTGTGGCGCTCAAGTCGCTCAATGCTTCCAAGGACCTTTTGAATGA
GCACTACCAGGATTTGGCTGACAAGCCCTTTTTTGCCGGTCTCGTCACTT
ACATGAGCTCGGGCCCTGTCATCGCCATGGTCTGGGAGGGCCTGAACGCT
GTCAAGGAGGGCCGCAAG
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Synonyms
Publications