jgi.p|Nanoce1779_2|633267, mRNA_9013 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633267
Unique Name	mRNA_9013
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1363
Alignment location	scaffold_30:207388..209420 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633353
Track	FilteredModels2
ProteinId	633267

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:207388..209420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633267	gene_9013	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633267	mRNA_9013-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9013	CDS_9013	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:207388..209420+
coding sequence from alignment at scaffold_30:207388..209420+

mRNA sequence

>mRNA_9013 ID=mRNA_9013|Name=jgi.p|Nanoce1779_2|633267|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp
AAATGACTACCGTGGACATTCCCGATTATGACGGTGCTTACCAGGCCAAA
CCGGACACACCTGAGCGTTTCTATCTATGTACAGCTTTCAATTTTGGTCT
TACATGTGCAGCAGGGAGGAGCGTGCCATTGAAGCGTGTGAACGTCAAAT
GCAACGTGCTAGACTTCCTCGCCGAGGTCTCAGTCGAGCAGACCTTTCAA
AATGATGACCCCTCCACGGCCGTTGAAGTCATCTACCGTTTCCCACTGGA
CGCCCAAGCCATCCTCACCTCATTTTCTACGCAGAAGAACGAGGGTCCCG
TCATCCATGGCAAGGTGACGGAGAAGGAAGAGGCGAAAGCCACGTATGAG
GAAGCCTTGGCCTGTGGACAAGGTGGGTATCTGCTGCATGAGGAAGGGGA
ATTGAAAGACGTTTTCTCGCTCAAAGTGGGAAACTTGCAACCAGGAGAGA
CGGTCAATGTCAAACTAACGTATGTTGCTCAGGTGGATGAGGAGGAAGAG
GAGGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAGCGGAAGGAAGCAAGTT
GCCACAGAAGACGACACCCAAGAATAAGAAAAACAAGAAAAAAAGCTCCT
CCTTGCGTCTCGTCATCCCCACGGCCGTCGCCCCTCGCTATATGCCGTCC
ATGGAACAGTCGTCTGAACTGTACAGACACGCGGAGACTGCCTTGGGGTC
CTGGCCAGAAGACCTGTTAATGCTCGAAGGAAATGTCAGATCTGCCTCCA
GAATCACCCATCTCGTCCCTCATACATTAAAAGAGAAGACGATGGTGTCT
GTGAAGGAGGAAGGGAAGGAGGGATCGTTTCATGCGGTGGTGCCTTACTT
AACGGAGGATTTCGTTTTGTTGATTGGGTTTGAGGAGAGGGTCAAAGATC
GGGCGTGGCTGGAACCGTCCACGGGGGCATTAACTGTCAGCGTGGGTTTG
GGCGAAGACCAGCTCCCCGATACCGAAGAGAGCAAAGGGGAATTCGTCTT
CGTCATCGATCGTTCGGGCTCCATGGATGGGTCAAAGATTCAGCATGCGC
CCATCTAATTTGACATCTGCTTTCACCACTGCTGCTGCTATGCCTGCTGC
TGCCACTGCTGCTTTTGGGACTCCTGTTTTATTCACGGACGAGACCAAAA
AAGTTGCCTTGGAGCATTGTGCACAAATGGAAGCAAATATGGGAGGGACG
GAGCTCCTTGCTCCTCTCCGTGCATTGTCCACGCTTCCCCCTTCCCTCCC
TCGTCAGGTGTTCCTGATTACTGATGGTCAGGTGGGAAACACGGGAGAGG
TGTTGGGGTGGGTGAGGAGGGAGGGACGGAGGGAGGGTACGAGGTTCTTT
GCGGTTGGAATCG

protein sequence of jgi.p|Nanoce1779_2|633267

>mRNA_9013-protein ID=mRNA_9013-protein|Name=jgi.p|Nanoce1779_2|633267|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MTTVDIPDYDGAYQAKPDTPERFYLCTAFNFGLTCAAGRSVPLKRVNVKC
NVLDFLAEVSVEQTFQNDDPSTAVEVIYRFPLDAQAILTSFSTQKNEGPV
IHGKVTEKEEAKATYEEALACGQGGYLLHEEGELKDVFSLKVGNLQPGET
VNVKLTYVAQVDEEEEEEKEEKEEGEEAEGSKLPQKTTPKNKKNKKKSSS
LRLVIPTAVAPRYMPSMEQSSELYRHAETALGSWPEDLLMLEGNVRSASR
ITHLVPHTLKEKTMVSVKEEGKEGSFHAVVPYLTEDFVLLIGFEERVKDR
AWLEPSTGALTVSVGLGEDQLPDTEESKGEFVFVIDRSGSMDGSKIQHAP
I*

mRNA from alignment at scaffold_30:207388..209420+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9013 ID=mRNA_9013|Name=jgi.p|Nanoce1779_2|633267|organism=Nannochloropsis oceanica|type=mRNA|length=2033bp|location=Sequence derived from alignment at scaffold_30:207388..209420+ (Nannochloropsis oceanica)
AAATGACTACCGTGGACATTCCCGATTATGACGGTGCTTACCAGGCCAAA
CCGGACACACCTGAGCGTTTCTATCTATGTACAGCTTTCAATTTTGGTCT
TACATGTAAGTCTAACTTCCTATCCCCTCCCCTCCTCTTCTTCATGCCCC
TCTCCCCGTCTTCCTTCACAGCATTATTCACGAAGAAGCTGACCAACTAT
TCGCATATACTTGGATGACCCACTTACAGGTGCAGCAGGGAGGAGCGTGC
CATTGAAGCGTGTGAACGTCAAATGCAACGTGCTAGACTTCCTCGCCGAG
GTAAAGAAGGTGGAAGAAGGAAGGGAAGGAAAGGAAGGGAAGGAGGAGAG
AAGGAATCGAAGAATAGCAGTAGTGAGTGTTTTTTTACCATTTTCCAAAG
TCATACAGCCTTGATGGGTCTTATATGAAGAGTGATCATAATAAGCGACA
GGAAAAGCATTTGATCTCTTTCATCAGCTCACATTGTGATCCACCCCTCC
GTCCCTCCCTCCCTCCCCTTTTATCATATCTCTCAGGTCTCAGTCGAGCA
GACCTTTCAAAATGATGACCCCTCCACGGCCGTTGAAGTCATCTACCGTT
TCCCACTGGACGCCCAAGCCATCCTCACCTCATTTTCTACGCAGAAGAAC
GAGGGTCCCGTCATCCATGGCAAGGTGACGGAGAAGGAAGAGGCGAAAGC
CACGTATGAGGAAGCCTTGGCCTGTGGACAAGGTGGGTATCTGCTGCATG
AGGAAGGGGAATTGAAAGACGTTTTCTCGCTCAAAGTGGGAAACTTGCAA
CCAGGAGAGACGGTCAATGTCAAACTAACGTATGTTGCTCAGGTGGATGA
GGAGGAAGAGGAGGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAGCGGAAG
GAAGCAAGTTGCCACAGAAGACGACACCCAAGAATAAGAAAAACAAGAAA
AAAAGCTCCTCCTTGCGTCTCGTCATCCCCACGGCCGTCGCCCCTCGCTA
TATGCCGTCCATGGAACAGTCGTCTGAACTGTACAGACACGCGGAGACTG
CCTTGGGGTCCTGGCCAGAAGACCTGTTAATGCTCGAAGGAAATGTCAGA
TCTGCCTCCAGAATCACCCATCTCGTCCCTCATACATTAAAAGAGAAGAC
GATGGTGTCTGTGAAGGAGGAAGGGAAGGAGGGATCGTTTCATGCGGTGG
TGCCTTACTTAACGGAGGATTTCGTTTTGTTGATTGGGTTTGAGGAGAGG
GTCAAAGATCGGGCGTGGCTGGAACCGTCCACGGGGGCATTAACTGTCAG
CGTGGGTTTGGGCGAAGGTACGTGAGAGATGCACCAGAGCCTGATTTCCC
CTCTGCTGCCCATTGACTGTCTCGTCTTCCGTGTTTTGTGGGTGCTCCAA
GCCGCCCTTACCAGCTTTATCGTTGTCGAATATCTCTAGTCCTTAGCACC
TAACCCACCATCTCCTCCTCCCTCGTTCCCCCTTCCTTCACAGACCAGCT
CCCCGATACCGAAGAGAGCAAAGGGGAATTCGTCTTCGTCATCGATCGTT
CGGGCTCCATGGATGGGTCAAAGATTCAGCATGCGCGTGAGGCCCTCGCT
CTGTGTATCTCCGCCCTACCTGAAGGCAGTCGTTTTCAGATCCTCTCCTT
TGGGAGCACCTTCGCCCCTCTCTTCCCGGCTTCCACTCCTACCTCCTTCC
CTCCCTCCCCCGTGGTCCAGCCATCTAATTTGACATCTGCTTTCACCACT
GCTGCTGCTATGCCTGCTGCTGCCACTGCTGCTTTTGGGACTCCTGTTTT
ATTCACGGACGAGACCAAAAAAGTTGCCTTGGAGCATTGTGCACAAATGG
AAGCAAATATGGGAGGGACGGAGCTCCTTGCTCCTCTCCGTGCATTGTCC
ACGCTTCCCCCTTCCCTCCCTCGTCAGGTGTTCCTGATTACTGATGGTCA
GGTGGGAAACACGGGAGAGGTGTTGGGGTGGGTGAGGAGGGAGGGACGGA
GGGAGGGTACGAGGTTCTTTGCGGTTGGAATCG

Coding sequence (CDS) from alignment at scaffold_30:207388..209420+

>mRNA_9013 ID=mRNA_9013|Name=jgi.p|Nanoce1779_2|633267|organism=Nannochloropsis oceanica|type=CDS|length=5280bp|location=Sequence derived from alignment at scaffold_30:207388..209420+ (Nannochloropsis oceanica)
ATGACTACCGTGGACATTCCCGATTATGACGGTGCTTACCAGGCCAAACC
GGACACACCTGAGCGTTTCTATCTATGTACAGCTTTCAATTTTGGTCTTA
CATGTGCAGCAGGGAGGAGCGTGCCATTGAAGCGTGTGAACGTCAAATGC
AACGTGCTAGACTTCCTCGCCGAGGTCTCAGTCGAGCAGACCTTTCAAAA
TGATGACCCCTCCACGGCCGTTGAAGTCATCTACCGTTTCCCACTGGACG
CCCAAGCCATCCTCACCTCATTTTCTACGCAGAAGAACGAGGGTCCCGTC
ATCCATGGCAAGGTGACGGAGAAGGAAGAGGCGAAAGCCACGTATGAGGA
AGCCTTGGCCTGTGGACAAGGTGGGTATCTGCTGCATGAGGAAGGGGAAT
TGAAAGACGTTTTCTCGCTCAAAGTGGGAAACTTGCAACCAGGAGAGACG
GTCAATGTCAAACTAACGTATGTTGCTCAGGTGGATGAGGAGGAAGAGGA
GGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAGCGGAAGGAAGCAAGTTGC
CACAGAAGACGACACCCAAGAATAAGAAAAACAAGAAAAAAAGCTCCTCC
TTGCGTCTCGTCATCCCCACGGCCGTCGCCCCTCGCTATATGCCGTCCAT
GGAACAGTCGTCTGAACTGTACAGACACGCGGAGACTGCCTTGGGGTCCT
GGCCAGAAGACCTGTTAATGCTCGAAGGAAATGTCAGATCTGCCTCCAGA
ATCACCCATCTCGTCCCTCATACATTAAAAGAGAAGACGATGGTGTCTGT
GAAGGAGGAAGGGAAGGAGGGATCGTTTCATGCGGTGGTGCCTTACTTAA
CGGAGGATTTCGTTTTGTTGATTGGGTTTGAGGAGAGGGTCAAAGATCGG
GCGTGGCTGGAACCGTCCACGGGGGCATTAACTGTCAGCGTGGGTTTGGG
CGAAGACCAGCTCCCCGATACCGAAGAGAGCAAAGGGGAATTCGTCTTCG
TCATCGATCGTTCGGGCTCCATGGATGGGTCAAAGATTCAGCATGCGCCC
ATCTAAATGACTACCGTGGACATTCCCGATTATGACGGTGCTTACCAGGC
CAAACCGGACACACCTGAGCGTTTCTATCTATGTACAGCTTTCAATTTTG
GTCTTACATGTGCAGCAGGGAGGAGCGTGCCATTGAAGCGTGTGAACGTC
AAATGCAACGTGCTAGACTTCCTCGCCGAGGTCTCAGTCGAGCAGACCTT
TCAAAATGATGACCCCTCCACGGCCGTTGAAGTCATCTACCGTTTCCCAC
TGGACGCCCAAGCCATCCTCACCTCATTTTCTACGCAGAAGAACGAGGGT
CCCGTCATCCATGGCAAGGTGACGGAGAAGGAAGAGGCGAAAGCCACGTA
TGAGGAAGCCTTGGCCTGTGGACAAGGTGGGTATCTGCTGCATGAGGAAG
GGGAATTGAAAGACGTTTTCTCGCTCAAAGTGGGAAACTTGCAACCAGGA
GAGACGGTCAATGTCAAACTAACGTATGTTGCTCAGGTGGATGAGGAGGA
AGAGGAGGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAGCGGAAGGAAGCA
AGTTGCCACAGAAGACGACACCCAAGAATAAGAAAAACAAGAAAAAAAGC
TCCTCCTTGCGTCTCGTCATCCCCACGGCCGTCGCCCCTCGCTATATGCC
GTCCATGGAACAGTCGTCTGAACTGTACAGACACGCGGAGACTGCCTTGG
GGTCCTGGCCAGAAGACCTGTTAATGCTCGAAGGAAATGTCAGATCTGCC
TCCAGAATCACCCATCTCGTCCCTCATACATTAAAAGAGAAGACGATGGT
GTCTGTGAAGGAGGAAGGGAAGGAGGGATCGTTTCATGCGGTGGTGCCTT
ACTTAACGGAGGATTTCGTTTTGTTGATTGGGTTTGAGGAGAGGGTCAAA
GATCGGGCGTGGCTGGAACCGTCCACGGGGGCATTAACTGTCAGCGTGGG
TTTGGGCGAAGACCAGCTCCCCGATACCGAAGAGAGCAAAGGGGAATTCG
TCTTCGTCATCGATCGTTCGGGCTCCATGGATGGGTCAAAGATTCAGCAT
GCGCCCATCTAAATGACTACCGTGGACATTCCCGATTATGACGGTGCTTA
CCAGGCCAAACCGGACACACCTGAGCGTTTCTATCTATGTACAGCTTTCA
ATTTTGGTCTTACATGTGCAGCAGGGAGGAGCGTGCCATTGAAGCGTGTG
AACGTCAAATGCAACGTGCTAGACTTCCTCGCCGAGGTCTCAGTCGAGCA
GACCTTTCAAAATGATGACCCCTCCACGGCCGTTGAAGTCATCTACCGTT
TCCCACTGGACGCCCAAGCCATCCTCACCTCATTTTCTACGCAGAAGAAC
GAGGGTCCCGTCATCCATGGCAAGGTGACGGAGAAGGAAGAGGCGAAAGC
CACGTATGAGGAAGCCTTGGCCTGTGGACAAGGTGGGTATCTGCTGCATG
AGGAAGGGGAATTGAAAGACGTTTTCTCGCTCAAAGTGGGAAACTTGCAA
CCAGGAGAGACGGTCAATGTCAAACTAACGTATGTTGCTCAGGTGGATGA
GGAGGAAGAGGAGGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAGCGGAAG
GAAGCAAGTTGCCACAGAAGACGACACCCAAGAATAAGAAAAACAAGAAA
AAAAGCTCCTCCTTGCGTCTCGTCATCCCCACGGCCGTCGCCCCTCGCTA
TATGCCGTCCATGGAACAGTCGTCTGAACTGTACAGACACGCGGAGACTG
CCTTGGGGTCCTGGCCAGAAGACCTGTTAATGCTCGAAGGAAATGTCAGA
TCTGCCTCCAGAATCACCCATCTCGTCCCTCATACATTAAAAGAGAAGAC
GATGGTGTCTGTGAAGGAGGAAGGGAAGGAGGGATCGTTTCATGCGGTGG
TGCCTTACTTAACGGAGGATTTCGTTTTGTTGATTGGGTTTGAGGAGAGG
GTCAAAGATCGGGCGTGGCTGGAACCGTCCACGGGGGCATTAACTGTCAG
CGTGGGTTTGGGCGAAGACCAGCTCCCCGATACCGAAGAGAGCAAAGGGG
AATTCGTCTTCGTCATCGATCGTTCGGGCTCCATGGATGGGTCAAAGATT
CAGCATGCGCCCATCTAAATGACTACCGTGGACATTCCCGATTATGACGG
TGCTTACCAGGCCAAACCGGACACACCTGAGCGTTTCTATCTATGTACAG
CTTTCAATTTTGGTCTTACATGTGCAGCAGGGAGGAGCGTGCCATTGAAG
CGTGTGAACGTCAAATGCAACGTGCTAGACTTCCTCGCCGAGGTCTCAGT
CGAGCAGACCTTTCAAAATGATGACCCCTCCACGGCCGTTGAAGTCATCT
ACCGTTTCCCACTGGACGCCCAAGCCATCCTCACCTCATTTTCTACGCAG
AAGAACGAGGGTCCCGTCATCCATGGCAAGGTGACGGAGAAGGAAGAGGC
GAAAGCCACGTATGAGGAAGCCTTGGCCTGTGGACAAGGTGGGTATCTGC
TGCATGAGGAAGGGGAATTGAAAGACGTTTTCTCGCTCAAAGTGGGAAAC
TTGCAACCAGGAGAGACGGTCAATGTCAAACTAACGTATGTTGCTCAGGT
GGATGAGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAGGAGGGGGAGGAAG
CGGAAGGAAGCAAGTTGCCACAGAAGACGACACCCAAGAATAAGAAAAAC
AAGAAAAAAAGCTCCTCCTTGCGTCTCGTCATCCCCACGGCCGTCGCCCC
TCGCTATATGCCGTCCATGGAACAGTCGTCTGAACTGTACAGACACGCGG
AGACTGCCTTGGGGTCCTGGCCAGAAGACCTGTTAATGCTCGAAGGAAAT
GTCAGATCTGCCTCCAGAATCACCCATCTCGTCCCTCATACATTAAAAGA
GAAGACGATGGTGTCTGTGAAGGAGGAAGGGAAGGAGGGATCGTTTCATG
CGGTGGTGCCTTACTTAACGGAGGATTTCGTTTTGTTGATTGGGTTTGAG
GAGAGGGTCAAAGATCGGGCGTGGCTGGAACCGTCCACGGGGGCATTAAC
TGTCAGCGTGGGTTTGGGCGAAGACCAGCTCCCCGATACCGAAGAGAGCA
AAGGGGAATTCGTCTTCGTCATCGATCGTTCGGGCTCCATGGATGGGTCA
AAGATTCAGCATGCGCCCATCTAAATGACTACCGTGGACATTCCCGATTA
TGACGGTGCTTACCAGGCCAAACCGGACACACCTGAGCGTTTCTATCTAT
GTACAGCTTTCAATTTTGGTCTTACATGTGCAGCAGGGAGGAGCGTGCCA
TTGAAGCGTGTGAACGTCAAATGCAACGTGCTAGACTTCCTCGCCGAGGT
CTCAGTCGAGCAGACCTTTCAAAATGATGACCCCTCCACGGCCGTTGAAG
TCATCTACCGTTTCCCACTGGACGCCCAAGCCATCCTCACCTCATTTTCT
ACGCAGAAGAACGAGGGTCCCGTCATCCATGGCAAGGTGACGGAGAAGGA
AGAGGCGAAAGCCACGTATGAGGAAGCCTTGGCCTGTGGACAAGGTGGGT
ATCTGCTGCATGAGGAAGGGGAATTGAAAGACGTTTTCTCGCTCAAAGTG
GGAAACTTGCAACCAGGAGAGACGGTCAATGTCAAACTAACGTATGTTGC
TCAGGTGGATGAGGAGGAAGAGGAGGAGAAGGAGGAGAAGGAGGAGGGGG
AGGAAGCGGAAGGAAGCAAGTTGCCACAGAAGACGACACCCAAGAATAAG
AAAAACAAGAAAAAAAGCTCCTCCTTGCGTCTCGTCATCCCCACGGCCGT
CGCCCCTCGCTATATGCCGTCCATGGAACAGTCGTCTGAACTGTACAGAC
ACGCGGAGACTGCCTTGGGGTCCTGGCCAGAAGACCTGTTAATGCTCGAA
GGAAATGTCAGATCTGCCTCCAGAATCACCCATCTCGTCCCTCATACATT
AAAAGAGAAGACGATGGTGTCTGTGAAGGAGGAAGGGAAGGAGGGATCGT
TTCATGCGGTGGTGCCTTACTTAACGGAGGATTTCGTTTTGTTGATTGGG
TTTGAGGAGAGGGTCAAAGATCGGGCGTGGCTGGAACCGTCCACGGGGGC
ATTAACTGTCAGCGTGGGTTTGGGCGAAGACCAGCTCCCCGATACCGAAG
AGAGCAAAGGGGAATTCGTCTTCGTCATCGATCGTTCGGGCTCCATGGAT
GGGTCAAAGATTCAGCATGCGCCCATCTAA

Synonyms

Publications