jgi.p|Nanoce1779_2|673872, mRNA_9638 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673872
Unique NamemRNA_9638
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1461
Alignment locationscaffold_31:157334..158794 -

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Properties
Property NameValue
TranscriptId673958
TrackFilteredModels2
ProteinId673872
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_31supercontigscaffold_31:157334..158794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673872gene_9638Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673872mRNA_9638-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9638CDS_9638Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9638 ID=mRNA_9638|Name=jgi.p|Nanoce1779_2|673872|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp
AAATTACAGCTGACATTGGTCAATGTGGTTCGAATAATGTTAGGACCTGT
GGAGCAATGGGGTGGCAAACACAACACTTGGTGAAAAATCATCGAAAGGC
TTAGATTGCGCGTTTCTGTCATGACGTCATTTCTCACCCAATTTGCGGAC
CATTACAAAGTAAATTTCTCTTCAAAGTATCGTAGTATCCTAATACGAGT
ACTCCTTCGATATATGCCCCCTGATCAAAAGGGTTGGATCGCGAAATCGA
ATTAGGACTTAAAACTCAAGAAATCAACAGATCTCAACAAATCTAAAGTA
TTGATCGATATTTGCAAGCCACGAGCAGCCGACGTTTTGGGCAGGCTCGC
TCCGCATCAAGAGTGTCTTCAATCTACAGCCCAGGACTGTGTGACAAGAC
GTAACTTAAACCAAGAGCTCCTGAACCAGGTCACTCTTGCCATGGCCGCC
TCAGGCATCAGTGTTGCTTATGGAGAGCGGGGCTATATTCCACTACAGGT
GCAAGCCCCCACGGGACATGGCCACCGGGCAACCGTGCGATAAGACGCCC
AACAATGACAAGGGTCGCATATTCTTCGCCACTAGCCTCATCCTCATTGA
CGAGATTTCCATGCCGCACCGAGGCAACCTCGAGGCCCTTGACAAAGCAG
TACGGGACCTTTCACACAACGAATTCACCCGGACCTTGCACATCTTCCGT
TCGGTGGGATGTTTGTCGTTTTTTCGGGAGAACTCCTCTGCCAAAGCCTC
CCAGTGGTCCGAGACACTGGTTGACAGGAATCGTCAAATAGGGCAATGGC
ACACCTAGGGATGCAATCGATGGCAATTATTTTGTATTTTAGTTTAGAAT
TTTGGTGAGGTTGGAAGGGTGGAAAATGACAAAACCAGTTTGAATTCCTT
ATGCAGAGGACAGCTCATGATCGAAATGGCGATTAATGACCTTCGGCACA
GATCTGGAACCAATCATGCGAGACGAAGAAAAGTACTTTAACATCAGAAA
ACTTGGGCAAGAAATAGGACGAGGTAGAGAAATAACCGAAAATGGTAGAC
ATTGGGTGATTTTTAATCTTCGTGCTCATATTGTGCTCGAAGCACACATT
GGACGATTATTCTGCAAAAATGGCCCGAACGACTGACTAGTACGACAATC
GTCAATGGTCGTCGATAGTCATGTGATTAGTCGAAGTCGTGCATGATTTC
CATCAGGCGATGACTAGTAATCGTCGTAGTAGTGCATATTTTCTGCAAGC
GACGTTCATATTCTTCGTCGGCCTACGACTATACACGACTAATAATCGTG
GCAACGATGGTGTAGATGACGATGAGATTGACGACGGTTATGATGATAAT
GATGATGACGATGATGGTGATGCGTAAGCACATGTGACGCATTCAAAGAG
GGAGGGATCTCCGACAGTGAGAAAACAAAAAAGGAAAAAGGAATACAGAT
GTAACTGGGAG
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protein sequence of jgi.p|Nanoce1779_2|673872

>mRNA_9638-protein ID=mRNA_9638-protein|Name=jgi.p|Nanoce1779_2|673872|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MESGAIFHYRCKPPRDMATGQPCDKTPNNDKGRIFFATSLILIDEISMPH
RGNLEALDKAVRDLSHNEFTRTLHIFRSVGCLSFFRENSSAKASQWSETL
VDRNRQIGQWHT*
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mRNA from alignment at scaffold_31:157334..158794-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9638 ID=mRNA_9638|Name=jgi.p|Nanoce1779_2|673872|organism=Nannochloropsis oceanica|type=mRNA|length=1461bp|location=Sequence derived from alignment at scaffold_31:157334..158794- (Nannochloropsis oceanica)
AAATTACAGCTGACATTGGTCAATGTGGTTCGAATAATGTTAGGACCTGT
GGAGCAATGGGGTGGCAAACACAACACTTGGTGAAAAATCATCGAAAGGC
TTAGATTGCGCGTTTCTGTCATGACGTCATTTCTCACCCAATTTGCGGAC
CATTACAAAGTAAATTTCTCTTCAAAGTATCGTAGTATCCTAATACGAGT
ACTCCTTCGATATATGCCCCCTGATCAAAAGGGTTGGATCGCGAAATCGA
ATTAGGACTTAAAACTCAAGAAATCAACAGATCTCAACAAATCTAAAGTA
TTGATCGATATTTGCAAGCCACGAGCAGCCGACGTTTTGGGCAGGCTCGC
TCCGCATCAAGAGTGTCTTCAATCTACAGCCCAGGACTGTGTGACAAGAC
GTAACTTAAACCAAGAGCTCCTGAACCAGGTCACTCTTGCCATGGCCGCC
TCAGGCATCAGTGTTGCTTATGGAGAGCGGGGCTATATTCCACTACAGGT
GCAAGCCCCCACGGGACATGGCCACCGGGCAACCGTGCGATAAGACGCCC
AACAATGACAAGGGTCGCATATTCTTCGCCACTAGCCTCATCCTCATTGA
CGAGATTTCCATGCCGCACCGAGGCAACCTCGAGGCCCTTGACAAAGCAG
TACGGGACCTTTCACACAACGAATTCACCCGGACCTTGCACATCTTCCGT
TCGGTGGGATGTTTGTCGTTTTTTCGGGAGAACTCCTCTGCCAAAGCCTC
CCAGTGGTCCGAGACACTGGTTGACAGGAATCGTCAAATAGGGCAATGGC
ACACCTAGGGATGCAATCGATGGCAATTATTTTGTATTTTAGTTTAGAAT
TTTGGTGAGGTTGGAAGGGTGGAAAATGACAAAACCAGTTTGAATTCCTT
ATGCAGAGGACAGCTCATGATCGAAATGGCGATTAATGACCTTCGGCACA
GATCTGGAACCAATCATGCGAGACGAAGAAAAGTACTTTAACATCAGAAA
ACTTGGGCAAGAAATAGGACGAGGTAGAGAAATAACCGAAAATGGTAGAC
ATTGGGTGATTTTTAATCTTCGTGCTCATATTGTGCTCGAAGCACACATT
GGACGATTATTCTGCAAAAATGGCCCGAACGACTGACTAGTACGACAATC
GTCAATGGTCGTCGATAGTCATGTGATTAGTCGAAGTCGTGCATGATTTC
CATCAGGCGATGACTAGTAATCGTCGTAGTAGTGCATATTTTCTGCAAGC
GACGTTCATATTCTTCGTCGGCCTACGACTATACACGACTAATAATCGTG
GCAACGATGGTGTAGATGACGATGAGATTGACGACGGTTATGATGATAAT
GATGATGACGATGATGGTGATGCGTAAGCACATGTGACGCATTCAAAGAG
GGAGGGATCTCCGACAGTGAGAAAACAAAAAAGGAAAAAGGAATACAGAT
GTAACTGGGAG
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Coding sequence (CDS) from alignment at scaffold_31:157334..158794-

>mRNA_9638 ID=mRNA_9638|Name=jgi.p|Nanoce1779_2|673872|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_31:157334..158794- (Nannochloropsis oceanica)
ATGGAGAGCGGGGCTATATTCCACTACAGGTGCAAGCCCCCACGGGACAT
GGCCACCGGGCAACCGTGCGATAAGACGCCCAACAATGACAAGGGTCGCA
TATTCTTCGCCACTAGCCTCATCCTCATTGACGAGATTTCCATGCCGCAC
CGAGGCAACCTCGAGGCCCTTGACAAAGCAGTACGGGACCTTTCACACAA
CGAATTCACCCGGACCTTGCACATCTTCCGTTCGGTGGGATGTTTGTCGT
TTTTTCGGGAGAACTCCTCTGCCAAAGCCTCCCAGTGGTCCGAGACACTG
GTTGACAGGAATCGTCAAATAGGGCAATGGCACACCTAG
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Synonyms
Publications