jgi.p|Nanoce1779_2|605837, mRNA_9241 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|605837
Unique NamemRNA_9241
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length887
Alignment locationscaffold_33:84244..85221 -

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Properties
Property NameValue
TranscriptId605923
TrackFilteredModels2
ProteinId605837
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_33supercontigscaffold_33:84244..85221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605837gene_9241Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|605837mRNA_9241-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9241CDS_9241Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9241 ID=mRNA_9241|Name=jgi.p|Nanoce1779_2|605837|organism=Nannochloropsis oceanica|type=mRNA|length=887bp
TTTTCCAATGTTATTTATTTATATGATTAACTTCCATCCGTTACACATTC
CCCGATTCTATGTTCCTCTTGCTCGCGCCAAGTTGCTGCCCCTGCTGACC
GTCGATATCCGCCGAGTCAACAACCACTCGTACCACCTTCTGGGCTTTCC
TCGTTATCTTTCCGCCGGGCATCTTCTCCTAGGCTACGTAGGAGAGGGAG
AAAGGGGCAGGAGGGATGGAAGGAGGGAAGGTGAGAGGGAGGAAGAGAGG
ATTAGATGCAGATGCAGACCTCGCTCTTGCACTGTACCCGTACGTATGGC
TTTTCGCGTACCCTCTTGCCAATCTTCCATTAGACATTATTTTTTTGCTC
GATTGACAGATAAAAGGATGGGCCATGAGGGAGATGGGGCGGGAGGAAGT
AAGCGGAGAGGGGGGAAGGGATTCGGAGGAGGAGATCAGACTCTTCTTGT
TTCGATCCTTTGCCCTGATCCTCGAGAGGATGAGGCTCTGACTTGTGTGG
CGAGATGCCGGAGGGATAGGTGGATGATATTCAGCAGCAACTGCTCCAGC
AGCAGCACTGAGGAACTATCAGGCAGTAGCAGGAGCAGCAGCAGCCCACA
CAAGGGCGGTGGCACTCGGAGTTGCAACCTTATAGTAGCAGGAGGGAAGG
TTGGAGGCCACCACATTCCTTGGCCATTCCCACCAAGCTCAGGCACCACC
AGCGTCACCAGCCCAGCTCGCATCATGAAGGTGAACATGTAGAGGACCGG
CTTCCTACGGCGGAGTGCTGCGTTCTTGGGAAAGCACGGAGGGAGGGTAC
GGAGGACCAAGATACTCGCTTGTGAACGATGCAGGCCAGGAAACATATGC
GCAGCCGCCGCACCCGTAAACCAATCGCATGTCCTGT
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protein sequence of jgi.p|Nanoce1779_2|605837

>mRNA_9241-protein ID=mRNA_9241-protein|Name=jgi.p|Nanoce1779_2|605837|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MLFIYMINFHPLHIPRFYVPLARAKLLPLLTVDIRRVNNHSYHLLGFPRY
LSAGHLLLGYVGEGERGRRDGRREGEREEERIRCRCRPRSCTVPVRMAFR
VPSCQSSIRHYFFARLTDKRMGHEGDGAGGSKRRGGKGFGGGDQTLLVSI
LCPDPREDEALTCVARCRRDRWMIFSSNCSSSSTEELSGSSRSSSSPHKG
GGTRSCNLIVAGGKVGGHHIPWPFPPSSGTTSVTSPARIMKVNM*
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mRNA from alignment at scaffold_33:84244..85221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9241 ID=mRNA_9241|Name=jgi.p|Nanoce1779_2|605837|organism=Nannochloropsis oceanica|type=mRNA|length=978bp|location=Sequence derived from alignment at scaffold_33:84244..85221- (Nannochloropsis oceanica)
TTTTCCAATGTTATTTATTTATATGATTAACTTCCATCCGTTACACATTC
CCCGATTCTATGTTCCTCTTGCTCGCGCCAAGTTGCTGCCCCTGCTGACC
GTCGATATCCGCCGAGTCAACAACCACTCGTACCACCTTCTGGGCTTTCC
TCGTTATCTTTCCGCCGGGCATCTTCTCCTAGGCTACGTAGGAGAGGGAG
AAAGGGGCAGGAGGGATGGAAGGAGGGAAGGTGAGAGGGAGGAAGAGAGG
ATTAGATGCAGATGCAGACCTCGCTCTTGCACTGTACCCGTACGTATGGC
TTTTCGCGTACCCTCTTGCCAATCTTCCATTAGACATTATTTTTTTGCTC
GATTGACAGATAAAAGGATGGGCCATGAGGGAGATGGGGCGGGAGGAAGT
AAGCGGAGAGGGGGGAAGGGATTCGGAGGAGGAGATCAGACTCTTCTTGT
TTCGATCCTTTGCCCTGATCCTCGAGAGGATGAGGCTCTGGTTATAGTAA
AGAATAGACTGTTGGAAATCACTTCTCCTCTAAATGTCATGTCTCTCTTT
GATTCACTGAAACGGGAGAAATTCATACCTGACTTGTGTGGCGAGATGCC
GGAGGGATAGGTGGATGATATTCAGCAGCAACTGCTCCAGCAGCAGCACT
GAGGAACTATCAGGCAGTAGCAGGAGCAGCAGCAGCCCACACAAGGGCGG
TGGCACTCGGAGTTGCAACCTTATAGTAGCAGGAGGGAAGGTTGGAGGCC
ACCACATTCCTTGGCCATTCCCACCAAGCTCAGGCACCACCAGCGTCACC
AGCCCAGCTCGCATCATGAAGGTGAACATGTAGAGGACCGGCTTCCTACG
GCGGAGTGCTGCGTTCTTGGGAAAGCACGGAGGGAGGGTACGGAGGACCA
AGATACTCGCTTGTGAACGATGCAGGCCAGGAAACATATGCGCAGCCGCC
GCACCCGTAAACCAATCGCATGTCCTGT
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Coding sequence (CDS) from alignment at scaffold_33:84244..85221-

>mRNA_9241 ID=mRNA_9241|Name=jgi.p|Nanoce1779_2|605837|organism=Nannochloropsis oceanica|type=CDS|length=1470bp|location=Sequence derived from alignment at scaffold_33:84244..85221- (Nannochloropsis oceanica)
CTGACTTGTGTGGCGAGATGCCGGAGGGATAGGTGGATGATATTCAGCAG
CAACTGCTCCAGCAGCAGCACTGAGGAACTATCAGGCAGTAGCAGGAGCA
GCAGCAGCCCACACAAGGGCGGTGGCACTCGGAGTTGCAACCTTATAGTA
GCAGGAGGGAAGGTTGGAGGCCACCACATTCCTTGGCCATTCCCACCAAG
CTCAGGCACCACCAGCGTCACCAGCCCAGCTCGCATCATGAAGGTGAACA
TGTAGATGTTATTTATTTATATGATTAACTTCCATCCGTTACACATTCCC
CGATTCTATGTTCCTCTTGCTCGCGCCAAGTTGCTGCCCCTGCTGACCGT
CGATATCCGCCGAGTCAACAACCACTCGTACCACCTTCTGGGCTTTCCTC
GTTATCTTTCCGCCGGGCATCTTCTCCTAGGCTACGTAGGAGAGGGAGAA
AGGGGCAGGAGGGATGGAAGGAGGGAAGGTGAGAGGGAGGAAGAGAGGAT
TAGATGCAGATGCAGACCTCGCTCTTGCACTGTACCCGTACGTATGGCTT
TTCGCGTACCCTCTTGCCAATCTTCCATTAGACATTATTTTTTTGCTCGA
TTGACAGATAAAAGGATGGGCCATGAGGGAGATGGGGCGGGAGGAAGTAA
GCGGAGAGGGGGGAAGGGATTCGGAGGAGGAGATCAGACTCTTCTTGTTT
CGATCCTTTGCCCTGATCCTCGAGAGGATGAGGCTCTGACTTGTGTGGCG
AGATGCCGGAGGGATAGGTGGATGATATTCAGCAGCAACTGCTCCAGCAG
CAGCACTGAGGAACTATCAGGCAGTAGCAGGAGCAGCAGCAGCCCACACA
AGGGCGGTGGCACTCGGAGTTGCAACCTTATAGTAGCAGGAGGGAAGGTT
GGAGGCCACCACATTCCTTGGCCATTCCCACCAAGCTCAGGCACCACCAG
CGTCACCAGCCCAGCTCGCATCATGAAGGTGAACATGTAGATGTTATTTA
TTTATATGATTAACTTCCATCCGTTACACATTCCCCGATTCTATGTTCCT
CTTGCTCGCGCCAAGTTGCTGCCCCTGCTGACCGTCGATATCCGCCGAGT
CAACAACCACTCGTACCACCTTCTGGGCTTTCCTCGTTATCTTTCCGCCG
GGCATCTTCTCCTAGGCTACGTAGGAGAGGGAGAAAGGGGCAGGAGGGAT
GGAAGGAGGGAAGGTGAGAGGGAGGAAGAGAGGATTAGATGCAGATGCAG
ACCTCGCTCTTGCACTGTACCCGTACGTATGGCTTTTCGCGTACCCTCTT
GCCAATCTTCCATTAGACATTATTTTTTTGCTCGATTGACAGATAAAAGG
ATGGGCCATGAGGGAGATGGGGCGGGAGGAAGTAAGCGGAGAGGGGGGAA
GGGATTCGGAGGAGGAGATCAGACTCTTCTTGTTTCGATCCTTTGCCCTG
ATCCTCGAGAGGATGAGGCT
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Synonyms
Publications