jgi.p|Nanoce1779_2|606503, mRNA_9350 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606503
Unique NamemRNA_9350
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1142
Alignment locationscaffold_35:170761..171902 -

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Properties
Property NameValue
TranscriptId606589
TrackFilteredModels2
ProteinId606503
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_35supercontigscaffold_35:170761..171902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606503gene_9350Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606503mRNA_9350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9350CDS_9350Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9350 ID=mRNA_9350|Name=jgi.p|Nanoce1779_2|606503|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
ACAGAGCACCTGCAACAAAGTCCCACGCGCCCGTGCAAGCTGACGCCGCA
CCGCGCTCGCCAAGACGCTAATCGCCTCAACCTAAAGCGTCGCCAAAGAA
CAAGAAGTTGTCCACGACCCCCCTCCCTCTCCGTTCCAGAGTGGTAGTCG
AGCGTCTCCTCGACTTCCGCCACCCGTCGTCCATTTGTCGTCCTCTTTTT
AAGTCAGCGCCATTAATCAATGCCATTGCCATGATCTTCCAATCGTCCAA
CTCCTCGACGCATTATGGTCTTGTCGCCATTGACGAAGCCACCGGCACGC
CCGTGTCCTTCCTCCATGTACTCCAAGCTCTGGCTAAGCCCATTTCGCCT
ACTTCATCATCGTATTTTTCTTCTCCTTCACCATCACACCCCTCATCAGC
ACCCGCATCCTCCTTCTCCTCCTCCACCAACACCACCTCCTCCACTTCGT
CTTCACCCAGCACGCCGCATGCGACCACTCTTCTCCTCGAAGCTTTACAA
GCCTGTACATTCGCCGCAGCATTTTGGGAGTGTCCGCCCATCTCTTATCG
GCTTCTAACCAACACACAAATACCCTTTGAGTGCATGCTTCTTGCATCTC
CGGCCCTGGAGCGCATGGCAGCGCAAGAGGATGCGGATGATTATCCCTTT
CGCGAATACTTCGAGAGACAGCACAGATGGAGAGAGGAGAAAAAGAAAAA
TGGCAAGGGGGAAAATGGAGACAGCATCTGTGTCTTTGACAACTTGGGAA
GAGATGCCACATTAGTTGTACCTTGTTACCTGGGGCAAGGCGACAAGGGC
AGTTACAGCCACTTTCTCTCGTACCTTCGTGCACCCTCCGTCCCTACCAG
TCAAAAGCTCGCGCTCTTGCAGCGCGTCGCACAGGTGACACTGGACAGCT
GCATGCACAAGAAAAACGCGGATGGGGAAGAAGTTGGTGTCGATAATGAG
GAGTTGGTGTGGGTGTCGACAAGTGGGATGGGCGTGGCCTGGTTACACGT
GCGGGTGGAGGCTCAACCCAAGTACTACTGCTGGCAAGAGTACGTGGCAC
GAGGAGGGACAGGGACAAGAGAAGAGGGAGATGTACATGAGGGTGGTGGA
CGAAAGAGTGGAAAGAAATATTGACATGAATGGCTCAGTTTA
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protein sequence of jgi.p|Nanoce1779_2|606503

>mRNA_9350-protein ID=mRNA_9350-protein|Name=jgi.p|Nanoce1779_2|606503|organism=Nannochloropsis oceanica|type=polypeptide|length=298bp
MIFQSSNSSTHYGLVAIDEATGTPVSFLHVLQALAKPISPTSSSYFSSPS
PSHPSSAPASSFSSSTNTTSSTSSSPSTPHATTLLLEALQACTFAAAFWE
CPPISYRLLTNTQIPFECMLLASPALERMAAQEDADDYPFREYFERQHRW
REEKKKNGKGENGDSICVFDNLGRDATLVVPCYLGQGDKGSYSHFLSYLR
APSVPTSQKLALLQRVAQVTLDSCMHKKNADGEEVGVDNEELVWVSTSGM
GVAWLHVRVEAQPKYYCWQEYVARGGTGTREEGDVHEGGGRKSGKKY*
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mRNA from alignment at scaffold_35:170761..171902-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9350 ID=mRNA_9350|Name=jgi.p|Nanoce1779_2|606503|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp|location=Sequence derived from alignment at scaffold_35:170761..171902- (Nannochloropsis oceanica)
ACAGAGCACCTGCAACAAAGTCCCACGCGCCCGTGCAAGCTGACGCCGCA
CCGCGCTCGCCAAGACGCTAATCGCCTCAACCTAAAGCGTCGCCAAAGAA
CAAGAAGTTGTCCACGACCCCCCTCCCTCTCCGTTCCAGAGTGGTAGTCG
AGCGTCTCCTCGACTTCCGCCACCCGTCGTCCATTTGTCGTCCTCTTTTT
AAGTCAGCGCCATTAATCAATGCCATTGCCATGATCTTCCAATCGTCCAA
CTCCTCGACGCATTATGGTCTTGTCGCCATTGACGAAGCCACCGGCACGC
CCGTGTCCTTCCTCCATGTACTCCAAGCTCTGGCTAAGCCCATTTCGCCT
ACTTCATCATCGTATTTTTCTTCTCCTTCACCATCACACCCCTCATCAGC
ACCCGCATCCTCCTTCTCCTCCTCCACCAACACCACCTCCTCCACTTCGT
CTTCACCCAGCACGCCGCATGCGACCACTCTTCTCCTCGAAGCTTTACAA
GCCTGTACATTCGCCGCAGCATTTTGGGAGTGTCCGCCCATCTCTTATCG
GCTTCTAACCAACACACAAATACCCTTTGAGTGCATGCTTCTTGCATCTC
CGGCCCTGGAGCGCATGGCAGCGCAAGAGGATGCGGATGATTATCCCTTT
CGCGAATACTTCGAGAGACAGCACAGATGGAGAGAGGAGAAAAAGAAAAA
TGGCAAGGGGGAAAATGGAGACAGCATCTGTGTCTTTGACAACTTGGGAA
GAGATGCCACATTAGTTGTACCTTGTTACCTGGGGCAAGGCGACAAGGGC
AGTTACAGCCACTTTCTCTCGTACCTTCGTGCACCCTCCGTCCCTACCAG
TCAAAAGCTCGCGCTCTTGCAGCGCGTCGCACAGGTGACACTGGACAGCT
GCATGCACAAGAAAAACGCGGATGGGGAAGAAGTTGGTGTCGATAATGAG
GAGTTGGTGTGGGTGTCGACAAGTGGGATGGGCGTGGCCTGGTTACACGT
GCGGGTGGAGGCTCAACCCAAGTACTACTGCTGGCAAGAGTACGTGGCAC
GAGGAGGGACAGGGACAAGAGAAGAGGGAGATGTACATGAGGGTGGTGGA
CGAAAGAGTGGAAAGAAATATTGACATGAATGGCTCAGTTTA
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Coding sequence (CDS) from alignment at scaffold_35:170761..171902-

>mRNA_9350 ID=mRNA_9350|Name=jgi.p|Nanoce1779_2|606503|organism=Nannochloropsis oceanica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_35:170761..171902- (Nannochloropsis oceanica)
ATGATCTTCCAATCGTCCAACTCCTCGACGCATTATGGTCTTGTCGCCAT
TGACGAAGCCACCGGCACGCCCGTGTCCTTCCTCCATGTACTCCAAGCTC
TGGCTAAGCCCATTTCGCCTACTTCATCATCGTATTTTTCTTCTCCTTCA
CCATCACACCCCTCATCAGCACCCGCATCCTCCTTCTCCTCCTCCACCAA
CACCACCTCCTCCACTTCGTCTTCACCCAGCACGCCGCATGCGACCACTC
TTCTCCTCGAAGCTTTACAAGCCTGTACATTCGCCGCAGCATTTTGGGAG
TGTCCGCCCATCTCTTATCGGCTTCTAACCAACACACAAATACCCTTTGA
GTGCATGCTTCTTGCATCTCCGGCCCTGGAGCGCATGGCAGCGCAAGAGG
ATGCGGATGATTATCCCTTTCGCGAATACTTCGAGAGACAGCACAGATGG
AGAGAGGAGAAAAAGAAAAATGGCAAGGGGGAAAATGGAGACAGCATCTG
TGTCTTTGACAACTTGGGAAGAGATGCCACATTAGTTGTACCTTGTTACC
TGGGGCAAGGCGACAAGGGCAGTTACAGCCACTTTCTCTCGTACCTTCGT
GCACCCTCCGTCCCTACCAGTCAAAAGCTCGCGCTCTTGCAGCGCGTCGC
ACAGGTGACACTGGACAGCTGCATGCACAAGAAAAACGCGGATGGGGAAG
AAGTTGGTGTCGATAATGAGGAGTTGGTGTGGGTGTCGACAAGTGGGATG
GGCGTGGCCTGGTTACACGTGCGGGTGGAGGCTCAACCCAAGTACTACTG
CTGGCAAGAGTACGTGGCACGAGGAGGGACAGGGACAAGAGAAGAGGGAG
ATGTACATGAGGGTGGTGGACGAAAGAGTGGAAAGAAATATTGA
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Synonyms
Publications