jgi.p|Nanoce1779_2|606613, mRNA_9134 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606613
Unique NamemRNA_9134
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length454
Alignment locationscaffold_36:20635..21419 -

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Properties
Property NameValue
TranscriptId606699
TrackFilteredModels2
ProteinId606613
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:20635..21419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606613gene_9134Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606613mRNA_9134-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9134CDS_9134Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9134 ID=mRNA_9134|Name=jgi.p|Nanoce1779_2|606613|organism=Nannochloropsis oceanica|type=mRNA|length=454bp
AGGAACGACAGCCATGCTCCTTCGAGGCATCCAGCTTTACAGGGCCATTT
TGAGACAGCACCGCCAAGGTCTGCCTCCACATTTGCGGAAGCTTGGGGAC
GAGTATGTGAAAGCCGAGTTTCGCGCTCACCGCAAATCCAGGACTGATGT
CCTGGCCTCTTTTCAAGAAGAGTGGAATGCGTACCTCAGTCACTTGAAAG
CGCAAAAGGGGCAGCCTCTGGTAGGGGCCTACCTAACGGATGAGGAGGTC
AGACGACTGTCTCCGGAACAGATGCAGCAGCTGAACAAACTCAAAGAGGA
AGCAGCCAAGGCGGCTGCAGACAAGGGAAAAGCCACACCGTCGTCGCTCG
GGTAGAAGGACGGAGAGAGGGAGGGAGGAAGGGAGGGAGGAAGGGAGGGA
GAACAGGGCAGAATGATTGTACACAGGATAAAACGAAAAAGAGCTCGACA
AAGG
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protein sequence of jgi.p|Nanoce1779_2|606613

>mRNA_9134-protein ID=mRNA_9134-protein|Name=jgi.p|Nanoce1779_2|606613|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MLLRGIQLYRAILRQHRQGLPPHLRKLGDEYVKAEFRAHRKSRTDVLASF
QEEWNAYLSHLKAQKGQPLVGAYLTDEEVRRLSPEQMQQLNKLKEEAAKA
AADKGKATPSSLG*
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mRNA from alignment at scaffold_36:20635..21419-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9134 ID=mRNA_9134|Name=jgi.p|Nanoce1779_2|606613|organism=Nannochloropsis oceanica|type=mRNA|length=785bp|location=Sequence derived from alignment at scaffold_36:20635..21419- (Nannochloropsis oceanica)
AGGAACGACAGCCATGCTCCTTCGAGGCATCCAGCTTTACAGGGCCATTT
TGAGACAGCACCGCCAAGGTCTGCCTCCACATTTGCGGAAGCTTGGGGAC
GAGTATGTGAAGTAAGTGCCGCAAAGGAGAGGAGGTGGAAGGAGGATAAG
GGTTGGTGATGATGCGAGGACCTGCTTTCAGCTCAACCCCTCTACTGCGT
TCCTCCCGCCTTCCCTCCTTCCGCCCCTTTAGAGCCGAGTTTCGCGCTCA
CCGCAAATCCAGGACTGATGTCCTGGCCTCTTTTCAAGAAGAGTGGAATG
CGTACCTCAGTCACTTGAAAGCGCAAAAGGGGCAGCCTCTGGTAGGGGCC
TACCTAACGGATGAGGAGGTCAGACGACTGGTAAGTGTAATGTCCCTCCT
GTCTCGCTCACGTGTTTACTCTCTCTTTACTGCCGTACATGCACCGTAGC
GATTCATCCCATGCTTTCCGCTGTAGAATGTCTCCTCTTGAATCCTGCCT
CCTGCCTGTTGAGGGTCAAACGGAGCGCGGTCTCTCACATCTCCTCACCC
ACCCCCTTCCTCCTTCCCTCCCTCCTTCCCTCCCTCCTAGTCTCCGGAAC
AGATGCAGCAGCTGAACAAACTCAAAGAGGAAGCAGCCAAGGCGGCTGCA
GACAAGGGAAAAGCCACACCGTCGTCGCTCGGGTAGAAGGACGGAGAGAG
GGAGGGAGGAAGGGAGGGAGGAAGGGAGGGAGAACAGGGCAGAATGATTG
TACACAGGATAAAACGAAAAAGAGCTCGACAAAGG
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Coding sequence (CDS) from alignment at scaffold_36:20635..21419-

>mRNA_9134 ID=mRNA_9134|Name=jgi.p|Nanoce1779_2|606613|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_36:20635..21419- (Nannochloropsis oceanica)
TCTCCGGAACAGATGCAGCAGCTGAACAAACTCAAAGAGGAAGCAGCCAA
GGCGGCTGCAGACAAGGGAAAAGCCACACCGTCGTCGCTCGGGTAGAGCC
GAGTTTCGCGCTCACCGCAAATCCAGGACTGATGTCCTGGCCTCTTTTCA
AGAAGAGTGGAATGCGTACCTCAGTCACTTGAAAGCGCAAAAGGGGCAGC
CTCTGGTAGGGGCCTACCTAACGGATGAGGAGGTCAGACGACTGATGCTC
CTTCGAGGCATCCAGCTTTACAGGGCCATTTTGAGACAGCACCGCCAAGG
TCTGCCTCCACATTTGCGGAAGCTTGGGGACGAGTATGTGAATCTCCGGA
ACAGATGCAGCAGCTGAACAAACTCAAAGAGGAAGCAGCCAAGGCGGCTG
CAGACAAGGGAAAAGCCACACCGTCGTCGCTCGGGTAGAGCCGAGTTTCG
CGCTCACCGCAAATCCAGGACTGATGTCCTGGCCTCTTTTCAAGAAGAGT
GGAATGCGTACCTCAGTCACTTGAAAGCGCAAAAGGGGCAGCCTCTGGTA
GGGGCCTACCTAACGGATGAGGAGGTCAGACGACTGATGCTCCTTCGAGG
CATCCAGCTTTACAGGGCCATTTTGAGACAGCACCGCCAAGGTCTGCCTC
CACATTTGCGGAAGCTTGGGGACGAGTATGTGAATCTCCGGAACAGATGC
AGCAGCTGAACAAACTCAAAGAGGAAGCAGCCAAGGCGGCTGCAGACAAG
GGAAAAGCCACACCGTCGTCGCTCGGGTAGAGCCGAGTTTCGCGCTCACC
GCAAATCCAGGACTGATGTCCTGGCCTCTTTTCAAGAAGAGTGGAATGCG
TACCTCAGTCACTTGAAAGCGCAAAAGGGGCAGCCTCTGGTAGGGGCCTA
CCTAACGGATGAGGAGGTCAGACGACTGATGCTCCTTCGAGGCATCCAGC
TTTACAGGGCCATTTTGAGACAGCACCGCCAAGGTCTGCCTCCACATTTG
CGGAAGCTTGGGGACGAGTATGTGAA
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Synonyms
Publications