jgi.p|Nanoce1779_2|560388, mRNA_9723 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|560388
Unique Name	mRNA_9723
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1975
Alignment location	scaffold_37:11316..13345 -

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Properties


Property Name	Value
TranscriptId	560474
Track	FilteredModels2
ProteinId	560388

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_37	supercontig	scaffold_37:11316..13345 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560388	gene_9723	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|560388	mRNA_9723-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9723	CDS_9723	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_37:11316..13345-
coding sequence from alignment at scaffold_37:11316..13345-

mRNA sequence

>mRNA_9723 ID=mRNA_9723|Name=jgi.p|Nanoce1779_2|560388|organism=Nannochloropsis oceanica|type=mRNA|length=1975bp
ATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGAGCACAACGA
AGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGG
AAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTG
TACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAA
GCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAG
GGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTC
GTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCA
GCATTTACGAGATTTGTATTTTTTTGGGGAACCCCGCGCAGACCAAGCCC
TGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGTTTTTG
GACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGACACTT
TCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACGACGAG
AGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTCAACCC
TCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACCAACCA
TGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACAGAAGC
AAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGGATGCG
ACACAAGAGCACGCGCAGAGGGTGACAACGATACATGCGGAGGAAAAGCA
GGGAGGGAGGCAAGAAAGGCGATACCAGGAAAGGAAAGAGGAGAACCACA
AGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAAGACGAA
GACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTCCCACCC
GGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACTCTTCTC
TTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTTAAAGGG
AAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGAGAGCAA
AGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGCCCAAGT
TAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACTTCCTGC
TTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGCAGGCAA
AGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACATCAGTG
GCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACATACGCTG
GCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGTGCGATA
TTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTCTCAGGG
AAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGAGGAAGATGAG
AGCGATGGGGGAGAAGGAGGAGAGCGAGATAAAGTGGACTCCCGGCTTTT
ATTCAAGGAGCTGGCTTCAGTACGTCTGAAGAAGGACGAAGAGGAGGAGG
AAGGAAAAGAAAAGGAAAAAGAGGGTTCGATGGCCTCCAGAAAGAGTAGC
GCAGTCCAGGACAAAGAGCAAGGGGACGCACAAGATGAGGGATGGGACGT
ATATACCGTCCCTCCACTCATTTAGTACACCATCGAATCAGAATCTCACG
AGGGTCGAAGCCCAAAAATGTGGCACCAAGAAGACACCGCATGAGTAAGG
CAGAAGTGAAAACAGGCTGTAAATTTCAATATCCAGTGCTCCCGTTTTCC
CTGTCGAATCAACAAATTTCGCCGTGGTAGATGAGACAGTACTCACAATT
ATGGAGCCCCAAAATAATAAAACCTGAACTCCTAAATCTGCCACACCTTA
ACAAGTGTTAGGGTAAAGACAGCGT

protein sequence of jgi.p|Nanoce1779_2|560388

>mRNA_9723-protein ID=mRNA_9723-protein|Name=jgi.p|Nanoce1779_2|560388|organism=Nannochloropsis oceanica|type=polypeptide|length=575bp
MPHITRALLRKRAEHNEGLLTTLEELTLHQEELEGINDVLGRTCRELKIL
YLQNNLLPCLEQLHHLKRLEYLNVALNNICIVEGLGSCEFLRKLDLTMNF
VDFDALEASVNHLASLQHLRDLYFFGEPRADQALAFFHYVVHRIPQLQFL
DGQEITRSVRLVAARHFPKLEARLRVLAVRARREKEEKAAAKRKEQESQP
SITTAATAINEGEVTNHDPETRREIYLELAAQKQAKNERQKALAPRERDA
TQEHAQRVTTIHAEEKQGGRQERRYQERKEENHKVRQKNEGKWTYNLQDE
DDESSNSNGNDSTNSHPGSITLNLVLPRHLDSSLIDVDVHPMHISVIVKG
KLLRLLLPKEVRVEESKAKRSKTTGDLMIIMPKLEGVIKRRGRHKAATSC
LFSAPIHLLSPSSSAGKGSSGNGKGNCSRSNISGNSSGCRRIRGMPRHTL
AEEMLAAREEVAYCVRYSSSSDSLSSPRLQPLREAVDVRSIVTRKKEEDE
SDGGEGGERDKVDSRLLFKELASVRLKKDEEEEEGKEKEKEGSMASRKSS
AVQDKEQGDAQDEGWDVYTVPPLI*

mRNA from alignment at scaffold_37:11316..13345-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9723 ID=mRNA_9723|Name=jgi.p|Nanoce1779_2|560388|organism=Nannochloropsis oceanica|type=mRNA|length=2030bp|location=Sequence derived from alignment at scaffold_37:11316..13345- (Nannochloropsis oceanica)
ATGCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGAGCACAACGA
AGGCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGG
AAGGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTG
TACTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAA
GCGCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAG
GGTTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTC
GTTGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCA
GCATTTACGAGATTTGTATTTTTTTGGGGAACCCCGCGCAGACCAAGCCC
TGGTTCGAGGGTGAGGATGAGAAAGTGAGGGGAGAAGGGGAGGAGGAGAA
GAAGCAGGCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGT
TTTTGGACGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGA
CACTTTCCTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACG
ACGAGAGAAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTC
AACCCTCCATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACC
AACCATGACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACA
GAAGCAAGCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGG
ATGCGACACAAGAGCACGCGCAGAGGGTGACAACGATACATGCGGAGGAA
AAGCAGGGAGGGAGGCAAGAAAGGCGATACCAGGAAAGGAAAGAGGAGAA
CCACAAGGTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAAG
ACGAAGACGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTCC
CACCCGGGCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACTC
TTCTCTTATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTTA
AAGGGAAGCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGAG
AGCAAAGCCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGCC
CAAGTTAGAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACTT
CCTGCTTGTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGCA
GGCAAAGGCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACAT
CAGTGGCAACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACATA
CGCTGGCTGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGTG
CGATATTCTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTCT
CAGGGAAGCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGAGGAAG
ATGAGAGCGATGGGGGAGAAGGAGGAGAGCGAGATAAAGTGGACTCCCGG
CTTTTATTCAAGGAGCTGGCTTCAGTACGTCTGAAGAAGGACGAAGAGGA
GGAGGAAGGAAAAGAAAAGGAAAAAGAGGGTTCGATGGCCTCCAGAAAGA
GTAGCGCAGTCCAGGACAAAGAGCAAGGGGACGCACAAGATGAGGGATGG
GACGTATATACCGTCCCTCCACTCATTTAGTACACCATCGAATCAGAATC
TCACGAGGGTCGAAGCCCAAAAATGTGGCACCAAGAAGACACCGCATGAG
TAAGGCAGAAGTGAAAACAGGCTGTAAATTTCAATATCCAGTGCTCCCGT
TTTCCCTGTCGAATCAACAAATTTCGCCGTGGTAGATGAGACAGTACTCA
CAATTATGGAGCCCCAAAATAATAAAACCTGAACTCCTAAATCTGCCACA
CCTTAACAAGTGTTAGGGTAAAGACAGCGT

Coding sequence (CDS) from alignment at scaffold_37:11316..13345-

>mRNA_9723 ID=mRNA_9723|Name=jgi.p|Nanoce1779_2|560388|organism=Nannochloropsis oceanica|type=CDS|length=3450bp|location=Sequence derived from alignment at scaffold_37:11316..13345- (Nannochloropsis oceanica)
GCATTCTTTCACTATGTCGTGCATCGAATTCCGCAGTTACAGTTTTTGGA
CGGACAGGAAATTACACGCAGTGTACGTTTGGTGGCTGCAAGACACTTTC
CTAAGTTAGAGGCGCGGTTGCGGGTGTTGGCGGTCAGGGCACGACGAGAG
AAGGAGGAAAAAGCAGCAGCCAAACGGAAGGAGCAAGAAAGTCAACCCTC
CATTACCACCGCTGCTACTGCAATAAATGAAGGTGAAGTCACCAACCATG
ACCCTGAGACACGGCGAGAGATTTATTTAGAGTTAGCCGCACAGAAGCAA
GCGAAGAACGAGCGACAGAAGGCCCTTGCGCCCCGAGAGCGGGATGCGAC
ACAAGAGCACGCGCAGAGGGTGACAACGATACATGCGGAGGAAAAGCAGG
GAGGGAGGCAAGAAAGGCGATACCAGGAAAGGAAAGAGGAGAACCACAAG
GTTCGACAGAAGAATGAGGGGAAATGGACCTACAACCTCCAAGACGAAGA
CGACGAAAGCAGCAACAGCAACGGCAACGACTCCACTAATTCCCACCCGG
GCAGCATCACTCTTAACCTCGTCCTCCCACGGCACCTAGACTCTTCTCTT
ATCGACGTGGATGTCCATCCAATGCATATCAGCGTTATAGTTAAAGGGAA
GCTGCTCCGCCTCCTCCTTCCCAAGGAAGTGCGAGTCGAGGAGAGCAAAG
CCAAGAGGAGCAAGACTACGGGAGACCTCATGATTATCATGCCCAAGTTA
GAAGGAGTGATAAAACGACGAGGGAGGCACAAGGCTGCTACTTCCTGCTT
GTTCTCGGCGCCTATACATTTGTTGTCGCCGTCGTCCTCCGCAGGCAAAG
GCAGCAGCGGCAACGGCAAGGGCAACTGCAGCCGCAGCAACATCAGTGGC
AACAGCAGCGGCTGCAGAAGGATAAGGGGCATGCCGCGACATACGCTGGC
TGAAGAGATGTTGGCAGCCCGGGAAGAAGTCGCCTACTGCGTGCGATATT
CTTCTTCCTCGGACTCTCTCTCCTCGCCACGATTGCAGCCTCTCAGGGAA
GCCGTAGATGTCCGGAGCATAGTCACAAGGAAGAAAGAGGAAGATGAGAG
CGATGGGGGAGAAGGAGGAGAGCGAGATAAAGTGGACTCCCGGCTTTTAT
TCAAGGAGCTGGCTTCAGTACGTCTGAAGAAGGACGAAGAGGAGGAGGAA
GGAAAAGAAAAGGAAAAAGAGGGTTCGATGGCCTCCAGAAAGAGTAGCGC
AGTCCAGGACAAAGAGCAAGGGGACGCACAAGATGAGGGATGGGACGTAT
ATACCGTCCCTCCACTCATTTAGATGCCGCACATTACCCGGGCTTTGTTG
CGAAAGCGGGCCGAGCACAACGAAGGCCTTCTCACCACTTTAGAAGAACT
GACCTTGCACCAAGAGGAGCTGGAAGGGATCAACGATGTCTTGGGCCGCA
CGTGTCGAGAGCTCAAGATTTTGTACTTACAGAACAATTTGTTGCCTTGC
CTCGAGCAGTTGCATCATTTGAAGCGCCTGGAGTACTTGAATGTGGCTCT
AAACAACATTTGCATTGTAGAAGGGTTGGGCTCGTGTGAGTTTTTGCGCA
AGTTGGATTTGACGATGAATTTCGTTGACTTCGATGCATTGGAAGCTAGT
GTGAATCATTTGGCTAGTTTGCAGCATTTACGAGATTTGTATTTTTTTGG
GGAACCCCGCGCAGACCAAGCCCTGGCATTCTTTCACTATGTCGTGCATC
GAATTCCGCAGTTACAGTTTTTGGACGGACAGGAAATTACACGCAGTGTA
CGTTTGGTGGCTGCAAGACACTTTCCTAAGTTAGAGGCGCGGTTGCGGGT
GTTGGCGGTCAGGGCACGACGAGAGAAGGAGGAAAAAGCAGCAGCCAAAC
GGAAGGAGCAAGAAAGTCAACCCTCCATTACCACCGCTGCTACTGCAATA
AATGAAGGTGAAGTCACCAACCATGACCCTGAGACACGGCGAGAGATTTA
TTTAGAGTTAGCCGCACAGAAGCAAGCGAAGAACGAGCGACAGAAGGCCC
TTGCGCCCCGAGAGCGGGATGCGACACAAGAGCACGCGCAGAGGGTGACA
ACGATACATGCGGAGGAAAAGCAGGGAGGGAGGCAAGAAAGGCGATACCA
GGAAAGGAAAGAGGAGAACCACAAGGTTCGACAGAAGAATGAGGGGAAAT
GGACCTACAACCTCCAAGACGAAGACGACGAAAGCAGCAACAGCAACGGC
AACGACTCCACTAATTCCCACCCGGGCAGCATCACTCTTAACCTCGTCCT
CCCACGGCACCTAGACTCTTCTCTTATCGACGTGGATGTCCATCCAATGC
ATATCAGCGTTATAGTTAAAGGGAAGCTGCTCCGCCTCCTCCTTCCCAAG
GAAGTGCGAGTCGAGGAGAGCAAAGCCAAGAGGAGCAAGACTACGGGAGA
CCTCATGATTATCATGCCCAAGTTAGAAGGAGTGATAAAACGACGAGGGA
GGCACAAGGCTGCTACTTCCTGCTTGTTCTCGGCGCCTATACATTTGTTG
TCGCCGTCGTCCTCCGCAGGCAAAGGCAGCAGCGGCAACGGCAAGGGCAA
CTGCAGCCGCAGCAACATCAGTGGCAACAGCAGCGGCTGCAGAAGGATAA
GGGGCATGCCGCGACATACGCTGGCTGAAGAGATGTTGGCAGCCCGGGAA
GAAGTCGCCTACTGCGTGCGATATTCTTCTTCCTCGGACTCTCTCTCCTC
GCCACGATTGCAGCCTCTCAGGGAAGCCGTAGATGTCCGGAGCATAGTCA
CAAGGAAGAAAGAGGAAGATGAGAGCGATGGGGGAGAAGGAGGAGAGCGA
GATAAAGTGGACTCCCGGCTTTTATTCAAGGAGCTGGCTTCAGTACGTCT
GAAGAAGGACGAAGAGGAGGAGGAAGGAAAAGAAAAGGAAAAAGAGGGTT
CGATGGCCTCCAGAAAGAGTAGCGCAGTCCAGGACAAAGAGCAAGGGGAC
GCACAAGATGAGGGATGGGACGTATATACCGTCCCTCCACTCATTTAGAT
GCCGCACATTACCCGGGCTTTGTTGCGAAAGCGGGCCGAGCACAACGAAG
GCCTTCTCACCACTTTAGAAGAACTGACCTTGCACCAAGAGGAGCTGGAA
GGGATCAACGATGTCTTGGGCCGCACGTGTCGAGAGCTCAAGATTTTGTA
CTTACAGAACAATTTGTTGCCTTGCCTCGAGCAGTTGCATCATTTGAAGC
GCCTGGAGTACTTGAATGTGGCTCTAAACAACATTTGCATTGTAGAAGGG
TTGGGCTCGTGTGAGTTTTTGCGCAAGTTGGATTTGACGATGAATTTCGT
TGACTTCGATGCATTGGAAGCTAGTGTGAATCATTTGGCTAGTTTGCAGC
ATTTACGAGATTTGTATTTTTTTGGGGAACCCCGCGCAGACCAAGCCCTG

Synonyms

Publications