jgi.p|Nanoce1779_2|607473, mRNA_9715 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607473
Unique Name	mRNA_9715
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1105
Alignment location	scaffold_38:205900..207286 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	607559
Track	FilteredModels2
ProteinId	607473

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:205900..207286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607473	gene_9715	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607473	mRNA_9715-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9715	CDS_9715	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:205900..207286+
coding sequence from alignment at scaffold_38:205900..207286+

mRNA sequence

>mRNA_9715 ID=mRNA_9715|Name=jgi.p|Nanoce1779_2|607473|organism=Nannochloropsis oceanica|type=mRNA|length=1105bp
CTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCATTCTCA
CCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCTTGAGC
AGGGCCGAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGCTTCGA
TACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAGGAGCT
CACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAGAAAGA
AGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGGGATGG
TTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGGGAAAT
GGCCAAGAGAGAAGAGGAGGAGGGGGTGCAGGTCGGATGGTGCTACCATT
CCCTCAAATGCGCCTCTTCCTTCCACAACACCCCCGTATTCCACATTACC
TCCTTCCACGGCCTCACTGCAGAGATGCTCAAGGGCTCCGGGATTCACAA
TTGGCCCATATATAGACATGAGGAGGAGCTGCCGGCGGTGTTTCCCCGGG
AGAGCATTGTTTATTTGTCGCCAGACGCGGAGGAAGTCTTGGAGGGGCCT
CTGGATCTCTCGAAAGTCTACGTCATCGGCGGCATCGTGGACAGGACCGT
CGTCCGTGGCATCTCGCAAGAGGTGGCCACTAGGTGGCAAATAAAATCGG
CACGTTTACCTCTCGAATATTTGAATTTAAAATCAAAACAAGCAACGGCG
GCGTTGAATGTGGATACGGTGGTCAAGGTGATGATGGATGTGCATGCGAA
CGGGGGAGACTGGCCGAGGGCGTTGGAGGGGTGTGTGCCCAAGAGGAAGG
CGGTGGAGAAGAGCAAAAGAGAGCTGAAGCGAGAGAAGAGGGGGAGGGAG
GAGAGGGGAAAGGAGGAGGGGAAGGAGTAATAAGGGGAAGAAGAGAAATA
GGTGTACTTTGAAAAGGGAGGGCAATAATAGAGAGGAATGTGACATAAAT
AAGAGAAAGCCCCGGTCGGTCTCAAAATAAAGTGCTTGATAATTGACATC
ACAAA

protein sequence of jgi.p|Nanoce1779_2|607473

>mRNA_9715-protein ID=mRNA_9715-protein|Name=jgi.p|Nanoce1779_2|607473|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MMARKKERKERFTALLAVDAGWLKKRKESRRTKREAREMAKREEEEGVQV
GWCYHSLKCASSFHNTPVFHITSFHGLTAEMLKGSGIHNWPIYRHEEELP
AVFPRESIVYLSPDAEEVLEGPLDLSKVYVIGGIVDRTVVRGISQEVATR
WQIKSARLPLEYLNLKSKQATAALNVDTVVKVMMDVHANGGDWPRALEGC
VPKRKAVEKSKRELKREKRGREERGKEEGKE*

mRNA from alignment at scaffold_38:205900..207286+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9715 ID=mRNA_9715|Name=jgi.p|Nanoce1779_2|607473|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp|location=Sequence derived from alignment at scaffold_38:205900..207286+ (Nannochloropsis oceanica)
CTGCCACCAACCTCCCCCTTGCACATCCTCGAACCATTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCTTCGTCCTCCGCATTCTCA
CCACGCTCTCCTCTTTGACCTCCAGTCTCACTGCGCCTCCCCGCTTGAGC
AGGGCCGAAAAAAAGCCGTCAAGTACGCCAATGCCAAGCAACGGCTTCGA
TACACGCGACAAAAATACCACCGGAAAAAGTCGCAAATTTACAAGGAGCT
CACGGAGGAGGAGCAGACAGATGTGAAGGCAAGAATGATGGCGAGAAAGA
AGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACGCGGGATGG
TTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCAAGGGAAAT
GGCCAAGAGAGAAGAGGAGGAGGGGGTGGTGGATAGGGAGTACAGGTCAG
ACGACGACTTCTCTTCCTTTCCTTTTTCCCTCCCTCCCCACCTCCGTCTC
GCCCTTGACCTTCATTACGGGAATCCATCCACGGCCTCCGGGGCACCCGC
TCCCTAACCCAGCAGGTCGGATGGTGCTACCATTCCCTCAAATGCGCCTC
TTCCTTCCACAACACCCCCGTATTCCACATTACCTCCTTCCACGGCCTCA
CTGCAGAGATGCTCAAGGGCTCCGGGATTCACAATTGGCCCATATATAGA
CATGAGGAGGAGCTGCCGGCGGTGTTTCCCCGGGAGAGCATTGTTTATTT
GTCGCCAGACGCGGAGGAAGTCTTGGAGGGGCCTCTGGATCTCTCGAAAG
GTAAGGGAGGAGCAATTTGTGTGAAGAGAGAGAGGGAAAGAGGATACGTC
CTGCGTGTATTTCTACTGCTCTTCTTCGGAAGCACATGGTTATCTTTTGA
TGCATTTCCACTCAGCCCACTTGCTTTCCCTTCCTCCCTGCCCTCCAGTC
TACGTCATCGGCGGCATCGTGGACAGGACCGTCGTCCGTGGCATCTCGCA
AGAGGTGGCCACTAGGTGGCAAATAAAATCGGCACGTTTACCTCTCGAAT
ATTTGAATTTAAAATCAAAACAAGCAACGGCGGCGTTGAATGTGGATACG
GTGGTCAAGGTGATGATGGATGTGCATGCGAACGGGGGAGACTGGCCGAG
GGCGTTGGAGGGGTGTGTGCCCAAGAGGAAGGCGGTGGAGAAGAGCAAAA
GAGAGCTGAAGCGAGAGAAGAGGGGGAGGGAGGAGAGGGGAAAGGAGGAG
GGGAAGGAGTAATAAGGGGAAGAAGAGAAATAGGTGTACTTTGAAAAGGG
AGGGCAATAATAGAGAGGAATGTGACATAAATAAGAGAAAGCCCCGGTCG
GTCTCAAAATAAAGTGCTTGATAATTGACATCACAAA

Coding sequence (CDS) from alignment at scaffold_38:205900..207286+

>mRNA_9715 ID=mRNA_9715|Name=jgi.p|Nanoce1779_2|607473|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_38:205900..207286+ (Nannochloropsis oceanica)
ATGATGGCGAGAAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGC
GGTGGACGCGGGATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGA
GGGAAGCAAGGGAAATGGCCAAGAGAGAAGAGGAGGAGGGGGTGCAGGTC
GGATGGTGCTACCATTCCCTCAAATGCGCCTCTTCCTTCCACAACACCCC
CGTATTCCACATTACCTCCTTCCACGGCCTCACTGCAGAGATGCTCAAGG
GCTCCGGGATTCACAATTGGCCCATATATAGACATGAGGAGGAGCTGCCG
GCGGTGTTTCCCCGGGAGAGCATTGTTTATTTGTCGCCAGACGCGGAGGA
AGTCTTGGAGGGGCCTCTGGATCTCTCGAAAGTCTACGTCATCGGCGGCA
TCGTGGACAGGACCGTCGTCCGTGGCATCTCGCAAGAGGTGGCCACTAGG
TGGCAAATAAAATCGGCACGTTTACCTCTCGAATATTTGAATTTAAAATC
AAAACAAGCAACGGCGGCGTTGAATGTGGATACGGTGGTCAAGGTGATGA
TGGATGTGCATGCGAACGGGGGAGACTGGCCGAGGGCGTTGGAGGGGTGT
GTGCCCAAGAGGAAGGCGGTGGAGAAGAGCAAAAGAGAGCTGAAGCGAGA
GAAGAGGGGGAGGGAGGAGAGGGGAAAGGAGGAGGGGAAGGAGTAAATGA
TGGCGAGAAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTG
GACGCGGGATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGA
AGCAAGGGAAATGGCCAAGAGAGAAGAGGAGGAGGGGGTGCAGGTCGGAT
GGTGCTACCATTCCCTCAAATGCGCCTCTTCCTTCCACAACACCCCCGTA
TTCCACATTACCTCCTTCCACGGCCTCACTGCAGAGATGCTCAAGGGCTC
CGGGATTCACAATTGGCCCATATATAGACATGAGGAGGAGCTGCCGGCGG
TGTTTCCCCGGGAGAGCATTGTTTATTTGTCGCCAGACGCGGAGGAAGTC
TTGGAGGGGCCTCTGGATCTCTCGAAAGTCTACGTCATCGGCGGCATCGT
GGACAGGACCGTCGTCCGTGGCATCTCGCAAGAGGTGGCCACTAGGTGGC
AAATAAAATCGGCACGTTTACCTCTCGAATATTTGAATTTAAAATCAAAA
CAAGCAACGGCGGCGTTGAATGTGGATACGGTGGTCAAGGTGATGATGGA
TGTGCATGCGAACGGGGGAGACTGGCCGAGGGCGTTGGAGGGGTGTGTGC
CCAAGAGGAAGGCGGTGGAGAAGAGCAAAAGAGAGCTGAAGCGAGAGAAG
AGGGGGAGGGAGGAGAGGGGAAAGGAGGAGGGGAAGGAGTAAATGATGGC
GAGAAAGAAGGAAAGGAAGGAGAGGTTTACGGCTCTGCTTGCGGTGGACG
CGGGATGGTTGAAGAAGAGGAAGGAAAGCAGGAGGACAAAGAGGGAAGCA
AGGGAAATGGCCAAGAGAGAAGAGGAGGAGGGGGTGCAGGTCGGATGGTG
CTACCATTCCCTCAAATGCGCCTCTTCCTTCCACAACACCCCCGTATTCC
ACATTACCTCCTTCCACGGCCTCACTGCAGAGATGCTCAAGGGCTCCGGG
ATTCACAATTGGCCCATATATAGACATGAGGAGGAGCTGCCGGCGGTGTT
TCCCCGGGAGAGCATTGTTTATTTGTCGCCAGACGCGGAGGAAGTCTTGG
AGGGGCCTCTGGATCTCTCGAAAGTCTACGTCATCGGCGGCATCGTGGAC
AGGACCGTCGTCCGTGGCATCTCGCAAGAGGTGGCCACTAGGTGGCAAAT
AAAATCGGCACGTTTACCTCTCGAATATTTGAATTTAAAATCAAAACAAG
CAACGGCGGCGTTGAATGTGGATACGGTGGTCAAGGTGATGATGGATGTG
CATGCGAACGGGGGAGACTGGCCGAGGGCGTTGGAGGGGTGTGTGCCCAA
GAGGAAGGCGGTGGAGAAGAGCAAAAGAGAGCTGAAGCGAGAGAAGAGGG
GGAGGGAGGAGAGGGGAAAGGAGGAGGGGAAGGAGTAA

Synonyms

Publications