jgi.p|Nanoce1779_2|607299, mRNA_9675 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607299
Unique Name	mRNA_9675
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1636
Alignment location	scaffold_38:76129..77897 +

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Properties


Property Name	Value
TranscriptId	607385
Track	FilteredModels2
ProteinId	607299

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_38	supercontig	scaffold_38:76129..77897 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607299	gene_9675	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607299	mRNA_9675-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9675	CDS_9675	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_38:76129..77897+
coding sequence from alignment at scaffold_38:76129..77897+

mRNA sequence

>mRNA_9675 ID=mRNA_9675|Name=jgi.p|Nanoce1779_2|607299|organism=Nannochloropsis oceanica|type=mRNA|length=1636bp
AATAGGTGCCCCACGGTTGTCATTTCAACAGGCTGGGACCGCCCTTCTAT
TTGTGCATTTGCGACATGAGGCCCTCCTCGGTGCATACGCACGCCAAGGA
GGCAGGACGATGGCCTCGTCCTTTTCTCCCCCCCTCTGCCCACCATTCCA
GCGCCGATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCC
GCATCCTTGGACAACCCTCAGTCTCCAAGACGTATTGACATGGAGCATCT
GGAGGAAAGACAGCAAGGCCAGTTGCTGCGGTCGGCAGGAAAAAAAAAGG
ATTTTTTCTTTGACAATGTCTCGTCCTCATCCTCCTCTTCATCCTCCCGC
CCAACTACGTCATCCCTCTCCTCATCATCTTCATCTCCCCCCCCTCCCTT
CTCATTGCTGCCTTCTTTGCCTTGTCTACGCAACATCATTCCAGCCTCCA
CGCTGCCCCTACATCCTCACATGCGGCAGCGACAGCAGCAGAACCAGCAG
CAGTATCACAAACAGCAGCAATATCATCAGCAGCTCCAACAGCAGCAGCA
GCACTGCCAGCAGCAGCAACTGTACCGATATCAAGAACAGCAGCAGCACT
ACCACCAAGCCCAGTCTTCTTCACATCCGCTTCGTCCCCTTCTGGAGCCC
ACCATGGCCAGCATCCTCCAGGCACGCGACTTGATATGTCAAAACATCGC
CTCCTTGGCGAAGCGACAAAAGCTTGACCGTGCCAAGACCCAGAACGTGC
AGGGCCTGATCCAGTTGACGTCGAAGGCCCGGCATACCGTAGACTGCTCC
GCGGGCCTGCTCCCTTTGCTGCAGCATCTGCTTGCCTCGCAGCCCCAGGC
GTTTGTTCCTCCGAGTAATGGTAGATCCGCAGAGCAGGGAGGAAAGACGA
TGGAACGAGGAGGATTAGAGAGAGGAGGAGGAGGAGTAGGTGATGGTGGT
GGCTTTTCTCAGACTCCTCCGAGTATCCCTTCCATGGCCGGCCTCGTGCA
GCACCTGGCGGCAGACGAGAGTGCATGCTACGCCGTGAGTTTTGTGGACC
CGCTGGGGGTCGAGAGCATCTGGTGCAACCAGCGCATGAGCGACCTCTTC
ATGACCAGCGAGGGTAAGAGGGTCACGCGACGGGTGTGCCCCTGTCTGTG
TCTCTCAGGACTTTCTGCGATCCGCGCTCTCTCCCTTCCCCTCCCCATCG
TTTTTTCACTCGTCCCCACGTGCCCTCTTCCCTTCCTCCTCATCAACCAC
AAACGTAACTTCAAGCCCACTTGCCGGCCGATCCTCATTCTCCTCTTCTT
CTCTCTCTCTCTTTCCTTCCTCGAGAGCTCCAAGGCCTCGTCTTGCACAC
AGGAATGGGCACTCCGCACTTCTGGGCCCGCTTCCTGACAGGCCCGGGCC
TGGCCGACCTCACAGCCGCCTTCACTTCCCTCCTCGTCGGCCCCTCCGCC
CACCTCTCCCTTGATGCCGTGCTCGACTGCTGTGTAAAGGAGAGCACGAA
AGAGGGCATGCCGGCGGGGGTCAGGAAGTGTGTGGCCAGCGTGGGTATGG
TCGTCACGGATGAGGGGCCTGGCAGCATTTTGATCCTCCGGGTGCTTCCG
TGTGGGAGGAGGGACTTAGGGGTGGGGATGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|607299

>mRNA_9675-protein ID=mRNA_9675-protein|Name=jgi.p|Nanoce1779_2|607299|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MRPSSVHTHAKEAGRWPRPFLPPSAHHSSADALALLSSVAVHALSASLDN
PQSPRRIDMEHLEERQQGQLLRSAGKKKDFFFDNVSSSSSSSSSRPTTSS
LSSSSSSPPPPFSLLPSLPCLRNIIPASTLPLHPHMRQRQQQNQQQYHKQ
QQYHQQLQQQQQHCQQQQLYRYQEQQQHYHQAQSSSHPLRPLLEPTMASI
LQARDLICQNIASLAKRQKLDRAKTQNVQGLIQLTSKARHTVDCSAGLLP
LLQHLLASQPQAFVPPSNGRSAEQGGKTMERGGLERGGGGVGDGGGFSQT
PPSIPSMAGLVQHLAADESACYAVSFVDPLGVESIWCNQRMSDLFMTSEG
KRVTRRVCPCLCLSGLSAIRALSLPLPIVFSLVPTCPLPFLLINHKRNFK
PTCRPILILLFFSLSLSFLESSKASSCTQEWALRTSGPAS*

mRNA from alignment at scaffold_38:76129..77897+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9675 ID=mRNA_9675|Name=jgi.p|Nanoce1779_2|607299|organism=Nannochloropsis oceanica|type=mRNA|length=1769bp|location=Sequence derived from alignment at scaffold_38:76129..77897+ (Nannochloropsis oceanica)
AATAGGTGCCCCACGGTTGTCATTTCAACAGGCTGGGACCGCCCTTCTAT
TTGTGCATTTGCGACATGAGGCCCTCCTCGGTGCATACGCACGCCAAGGA
GGCAGGACGATGGCCTCGTCCTTTTCTCCCCCCCTCTGCCCACCATTCCA
GCGCCGATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCC
GCATCCTTGGACAAGTAAGTTCCTGGTAGAGCAGGGGAAGAAGGCGCGCA
CACACAACATGCCCGAGCCTAGTATGTGTGTTGCACTGCAACTGAACTTC
CACTTCTCACTACACGCCCGTGCCCCGCTTCTCCCCATCCAACACAGCCC
TCAGTCTCCAAGACGTATTGACATGGAGCATCTGGAGGAAAGACAGCAAG
GCCAGTTGCTGCGGTCGGCAGGAAAAAAAAAGGATTTTTTCTTTGACAAT
GTCTCGTCCTCATCCTCCTCTTCATCCTCCCGCCCAACTACGTCATCCCT
CTCCTCATCATCTTCATCTCCCCCCCCTCCCTTCTCATTGCTGCCTTCTT
TGCCTTGTCTACGCAACATCATTCCAGCCTCCACGCTGCCCCTACATCCT
CACATGCGGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAGCA
GCAATATCATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCAGC
AACTGTACCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGTCT
TCTTCACATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATCCT
CCAGGCACGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCGAC
AAAAGCTTGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGTTG
ACGTCGAAGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCTTT
GCTGCAGCATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAGTA
ATGGTAGATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGATTA
GAGAGAGGAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACTCC
TCCGAGTATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGACG
AGAGTGCATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGAGC
ATCTGGTGCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGGTAA
GAGGGTCACGCGACGGGTGTGCCCCTGTCTGTGTCTCTCAGGACTTTCTG
CGATCCGCGCTCTCTCCCTTCCCCTCCCCATCGTTTTTTCACTCGTCCCC
ACGTGCCCTCTTCCCTTCCTCCTCATCAACCACAAACGTAACTTCAAGCC
CACTTGCCGGCCGATCCTCATTCTCCTCTTCTTCTCTCTCTCTCTTTCCT
TCCTCGAGAGCTCCAAGGCCTCGTCTTGCACACAGGAATGGGCACTCCGC
ACTTCTGGGCCCGCTTCCTGACAGGCCCGGGCCTGGCCGACCTCACAGCC
GCCTTCACTTCCCTCCTCGTCGGCCCCTCCGCCCACCTCTCCCTTGATGC
CGTGCTCGACTGCTGTGTAAAGGAGAGCACGAAAGAGGGCATGCCGGCGG
GGGTCAGGAAGTGTGTGGCCAGCGTGGGTATGGTCGTCACGGATGAGGGG
CCTGGCAGCATTTTGATCCTCCGGGTGCTTCCGTGTGGGAGGAGGGACTT
AGGGGTGGGGATGGGAGGG

Coding sequence (CDS) from alignment at scaffold_38:76129..77897+

>mRNA_9675 ID=mRNA_9675|Name=jgi.p|Nanoce1779_2|607299|organism=Nannochloropsis oceanica|type=CDS|length=2646bp|location=Sequence derived from alignment at scaffold_38:76129..77897+ (Nannochloropsis oceanica)
ATGAGGCCCTCCTCGGTGCATACGCACGCCAAGGAGGCAGGACGATGGCC
TCGTCCTTTTCTCCCCCCCTCTGCCCACCATTCCAGCGCCGATGCCCTCG
CCCTTCTGTCCTCCGTGGCCGTCCACGCCCTCTCCGCATCCTTGGACAAC
CCTCAGTCTCCAAGACGTATTGACATGGAGCATCTGGAGGAAAGACAGCA
AGGCCAGTTGCTGCGGTCGGCAGGAAAAAAAAAGGATTTTTTCTTTGACA
ATGTCTCGTCCTCATCCTCCTCTTCATCCTCCCGCCCAACTACGTCATCC
CTCTCCTCATCATCTTCATCTCCCCCCCCTCCCTTCTCATTGCTGCCTTC
TTTGCCTTGTCTACGCAACATCATTCCAGCCTCCACGCTGCCCCTACATC
CTCACATGCGGCAGCGACAGCAGCAGAACCAGCAGCAGTATCACAAACAG
CAGCAATATCATCAGCAGCTCCAACAGCAGCAGCAGCACTGCCAGCAGCA
GCAACTGTACCGATATCAAGAACAGCAGCAGCACTACCACCAAGCCCAGT
CTTCTTCACATCCGCTTCGTCCCCTTCTGGAGCCCACCATGGCCAGCATC
CTCCAGGCACGCGACTTGATATGTCAAAACATCGCCTCCTTGGCGAAGCG
ACAAAAGCTTGACCGTGCCAAGACCCAGAACGTGCAGGGCCTGATCCAGT
TGACGTCGAAGGCCCGGCATACCGTAGACTGCTCCGCGGGCCTGCTCCCT
TTGCTGCAGCATCTGCTTGCCTCGCAGCCCCAGGCGTTTGTTCCTCCGAG
TAATGGTAGATCCGCAGAGCAGGGAGGAAAGACGATGGAACGAGGAGGAT
TAGAGAGAGGAGGAGGAGGAGTAGGTGATGGTGGTGGCTTTTCTCAGACT
CCTCCGAGTATCCCTTCCATGGCCGGCCTCGTGCAGCACCTGGCGGCAGA
CGAGAGTGCATGCTACGCCGTGAGTTTTGTGGACCCGCTGGGGGTCGAGA
GCATCTGGTGCAACCAGCGCATGAGCGACCTCTTCATGACCAGCGAGGGT
AAGAGGGTCACGCGACGGGTGTGCCCCTGTCTGTGTCTCTCAGGACTTTC
TGCGATCCGCGCTCTCTCCCTTCCCCTCCCCATCGTTTTTTCACTCGTCC
CCACGTGCCCTCTTCCCTTCCTCCTCATCAACCACAAACGTAACTTCAAG
CCCACTTGCCGGCCGATCCTCATTCTCCTCTTCTTCTCTCTCTCTCTTTC
CTTCCTCGAGAGCTCCAAGGCCTCGTCTTGCACACAGGAATGGGCACTCC
GCACTTCTGGGCCCGCTTCCTGAATGAGGCCCTCCTCGGTGCATACGCAC
GCCAAGGAGGCAGGACGATGGCCTCGTCCTTTTCTCCCCCCCTCTGCCCA
CCATTCCAGCGCCGATGCCCTCGCCCTTCTGTCCTCCGTGGCCGTCCACG
CCCTCTCCGCATCCTTGGACAACCCTCAGTCTCCAAGACGTATTGACATG
GAGCATCTGGAGGAAAGACAGCAAGGCCAGTTGCTGCGGTCGGCAGGAAA
AAAAAAGGATTTTTTCTTTGACAATGTCTCGTCCTCATCCTCCTCTTCAT
CCTCCCGCCCAACTACGTCATCCCTCTCCTCATCATCTTCATCTCCCCCC
CCTCCCTTCTCATTGCTGCCTTCTTTGCCTTGTCTACGCAACATCATTCC
AGCCTCCACGCTGCCCCTACATCCTCACATGCGGCAGCGACAGCAGCAGA
ACCAGCAGCAGTATCACAAACAGCAGCAATATCATCAGCAGCTCCAACAG
CAGCAGCAGCACTGCCAGCAGCAGCAACTGTACCGATATCAAGAACAGCA
GCAGCACTACCACCAAGCCCAGTCTTCTTCACATCCGCTTCGTCCCCTTC
TGGAGCCCACCATGGCCAGCATCCTCCAGGCACGCGACTTGATATGTCAA
AACATCGCCTCCTTGGCGAAGCGACAAAAGCTTGACCGTGCCAAGACCCA
GAACGTGCAGGGCCTGATCCAGTTGACGTCGAAGGCCCGGCATACCGTAG
ACTGCTCCGCGGGCCTGCTCCCTTTGCTGCAGCATCTGCTTGCCTCGCAG
CCCCAGGCGTTTGTTCCTCCGAGTAATGGTAGATCCGCAGAGCAGGGAGG
AAAGACGATGGAACGAGGAGGATTAGAGAGAGGAGGAGGAGGAGTAGGTG
ATGGTGGTGGCTTTTCTCAGACTCCTCCGAGTATCCCTTCCATGGCCGGC
CTCGTGCAGCACCTGGCGGCAGACGAGAGTGCATGCTACGCCGTGAGTTT
TGTGGACCCGCTGGGGGTCGAGAGCATCTGGTGCAACCAGCGCATGAGCG
ACCTCTTCATGACCAGCGAGGGTAAGAGGGTCACGCGACGGGTGTGCCCC
TGTCTGTGTCTCTCAGGACTTTCTGCGATCCGCGCTCTCTCCCTTCCCCT
CCCCATCGTTTTTTCACTCGTCCCCACGTGCCCTCTTCCCTTCCTCCTCA
TCAACCACAAACGTAACTTCAAGCCCACTTGCCGGCCGATCCTCATTCTC
CTCTTCTTCTCTCTCTCTCTTTCCTTCCTCGAGAGCTCCAAGGCCTCGTC
TTGCACACAGGAATGGGCACTCCGCACTTCTGGGCCCGCTTCCTGA

Synonyms

Publications