jgi.p|Nanoce1779_2|296261, mRNA_2195 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|296261
Unique NamemRNA_2195
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2237
Alignment locationscaffold_4:1033940..1036176 -

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Properties
Property NameValue
TranscriptId296347
TrackFilteredModels2
ProteinId296261
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1033940..1036176 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296261gene_2195Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|296261mRNA_2195-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2195CDS_2195Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2195 ID=mRNA_2195|Name=jgi.p|Nanoce1779_2|296261|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp
GCTGGTAACTGCTACCAGGAGGAGGAGCTGCAGGGAGGCCTGGACTCGAT
TGATGCTCGTCATGGTTTCAGGCACGTGGCTTGCTTCAAGGGAGAGCAGG
CCCTCAGTTGTTGCTGTTGATGGTCGATGATGAAAGCGCCCGCGACAAAC
GTGGATGAGAGGGGGGCGAGTCAGCCTTCTGCCTGTGAATTGTTTGGAAG
TGAGAGGCGTAATGAGTATGCGGTGTTTGTGTGCGGTGACCGCACACGGC
ATGGAGTCGCCAAGGCATATGTTCCAGACCTCACTTTCCGACATTCATGC
CCGTGCTATACAGACACAAGTACAGAGGCTGTTACGACATTCGCAAGGAT
CAGGAGGGCGCGTCGATCGCTTGCTGCGGTGCTGGTTGTGCCTCTTCACG
TCTCCAAAAACACGACGAGAGCGAACCTCCCACCCCCATTGCTCCTCCTT
CAAAACCCCTTCCACCATAACGCATTAACCAGTTGCACAATTATGGAGAC
CACTGCCACTGCACCTGTCGAAGACAATTTTGAAGCCCTGGACATGGAAA
TGCTCATTATAGACGTTCCCCACCCTCCAAATCCAATGCCTCGCTTCTAC
GTTAGCGGCGTCTCGGCAACACGCAAGCCCGCAGTCCTGGTGACGCTCCA
GCTAACCCACCTTGTCTCCATTGGAGCTGAACCCGGAAAGATTCTGGCTT
CACAGTTTCAGCCGGGCCGTACCTCCCTCTCTTTCCCAAAAATCTTGGAC
ATCGAAGAACAAGACCTCCTCTCCTCCCTACTTCCCACTCTCCTTCCCTT
CCTCGCCGCGACCACGCCAGAGGACACCATCCTAGTGCATTGCCAAGCCG
GCCAATCACGTTCTGTTGCTGCAGTGTTGATGTACTTGATAATATGTCAA
GGCCTGACCTTGGTGGATGCCCACGCCCAGGTAGCTCGGTCTCGGCCAGG
GGTTTGTGTAAATCCGGGTTTCCTCCGTCAGCTTTTGTTTTTGGAAGACT
TTCCCGGCTTGCGTCGCTCTCCTTTCACAGGAACCAAATGTGGCGCCAAT
GAATTTATCTCCGCTTCTTTTACTGACACGGAGAGCAAAGCAACCGCACT
CATTCAGAGTAGCCGCAGAAGAAGTGCAATGCGCGGTTCATGGGCCGCCG
AGCACCGCCTTTACCTCTTGAATAATCTCTTTCGAGTCACATGTCGTCTT
TCCTCTTTGGAGCCAGTACAGGTCTGGGAAACAATCGACAATGAACACAG
AAAGCTGGTAAAGTTGTTGATCAGGTATGGGCATGCTTGTCGCAAGGGTC
CGCCGGTGGAAGAGGAAGGGGGGGGGGAGGAGGAAGAGGAGGAAGTGTTG
GGAGAGGAAGAAGAGGCAAGGGGAAAAGGGTGGGTCGCGCGCTGTCGACA
TTGCCATCAGCTACTATGTACAGAAGAAGATGTAGTGAGGCATGCGGGGG
AGGAAATTGATATTTTGAAGAAGAGGACGAGGGTGAGAGCGCGAGGCATA
GGCAGAGCAGCACCAGCAGCTGAGAGTGTGTGGGGGTACGGGAGGGAGTT
CGAGCGGCAGCCGGTGCTGCATTTGTTGCCCCTATCGCATGCTTGTGTGA
AGACTAGGAAAGCAGAGGAGGAGAAGAGAAAGAAGGAGGGGAAAAGGAGG
AATATTGAAAATGGAGAGGATGAGGGAAAAGGGGAGGGCGGCAGACATGG
AAAAAGCAGGACGACTTGTCGTCATCGTTATGTGTTCCCCCCACCATGGG
TCATGCCGTCCTTGCTTACATCAGAAAGGGGAGGAGATGGCATCAGTATC
ACAGCCACTGACGCCAAGGAAGGGACGATGAATGTGAGAGGAGGAATAGG
GAGGGGGGGAGGGAAGGAAGGAGGGATGGTCGATCTCAGGTGCCCGGGTC
GGCATTGTGGCGCTGTGGTGGGGTCAATGCAGGCACGACCGGAGGAAGGA
AGGAGGGAGAAAGGAGGATGCGAGTGCTTAGAGCCGTTGCCAGTGGTAGT
GGTGAGATTTTGGGAGGAGGCATTGATGAATGAATGCGCGAGAGAGGAGC
GAGGGAGAGAGGGATGGAAGGAAAGAGAAGATCACGGGGGTCTGTGTGTG
AAATAAAAGAGAGCGGAGGAGCGAAAAGTGTACAGTGTAAACATAACCAT
ACTGAATGCCCCACTGACAAGAAGCAGCAGTTTCTGAGTGGGCGAGAGAG
CAGACAGGTAAACAAGCATCATCGTCTTGGTCCTTAT
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protein sequence of jgi.p|Nanoce1779_2|296261

>mRNA_2195-protein ID=mRNA_2195-protein|Name=jgi.p|Nanoce1779_2|296261|organism=Nannochloropsis oceanica|type=polypeptide|length=660bp
MMKAPATNVDERGASQPSACELFGSERRNEYAVFVCGDRTRHGVAKAYVP
DLTFRHSCPCYTDTSTEAVTTFARIRRARRSLAAVLVVPLHVSKNTTRAN
LPPPLLLLQNPFHHNALTSCTIMETTATAPVEDNFEALDMEMLIIDVPHP
PNPMPRFYVSGVSATRKPAVLVTLQLTHLVSIGAEPGKILASQFQPGRTS
LSFPKILDIEEQDLLSSLLPTLLPFLAATTPEDTILVHCQAGQSRSVAAV
LMYLIICQGLTLVDAHAQVARSRPGVCVNPGFLRQLLFLEDFPGLRRSPF
TGTKCGANEFISASFTDTESKATALIQSSRRRSAMRGSWAAEHRLYLLNN
LFRVTCRLSSLEPVQVWETIDNEHRKLVKLLIRYGHACRKGPPVEEEGGG
EEEEEEVLGEEEEARGKGWVARCRHCHQLLCTEEDVVRHAGEEIDILKKR
TRVRARGIGRAAPAAESVWGYGREFERQPVLHLLPLSHACVKTRKAEEEK
RKKEGKRRNIENGEDEGKGEGGRHGKSRTTCRHRYVFPPPWVMPSLLTSE
RGGDGISITATDAKEGTMNVRGGIGRGGGKEGGMVDLRCPGRHCGAVVGS
MQARPEEGRREKGGCECLEPLPVVVVRFWEEALMNECAREERGREGWKER
EDHGGLCVK*
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mRNA from alignment at scaffold_4:1033940..1036176-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2195 ID=mRNA_2195|Name=jgi.p|Nanoce1779_2|296261|organism=Nannochloropsis oceanica|type=mRNA|length=2237bp|location=Sequence derived from alignment at scaffold_4:1033940..1036176- (Nannochloropsis oceanica)
GCTGGTAACTGCTACCAGGAGGAGGAGCTGCAGGGAGGCCTGGACTCGAT
TGATGCTCGTCATGGTTTCAGGCACGTGGCTTGCTTCAAGGGAGAGCAGG
CCCTCAGTTGTTGCTGTTGATGGTCGATGATGAAAGCGCCCGCGACAAAC
GTGGATGAGAGGGGGGCGAGTCAGCCTTCTGCCTGTGAATTGTTTGGAAG
TGAGAGGCGTAATGAGTATGCGGTGTTTGTGTGCGGTGACCGCACACGGC
ATGGAGTCGCCAAGGCATATGTTCCAGACCTCACTTTCCGACATTCATGC
CCGTGCTATACAGACACAAGTACAGAGGCTGTTACGACATTCGCAAGGAT
CAGGAGGGCGCGTCGATCGCTTGCTGCGGTGCTGGTTGTGCCTCTTCACG
TCTCCAAAAACACGACGAGAGCGAACCTCCCACCCCCATTGCTCCTCCTT
CAAAACCCCTTCCACCATAACGCATTAACCAGTTGCACAATTATGGAGAC
CACTGCCACTGCACCTGTCGAAGACAATTTTGAAGCCCTGGACATGGAAA
TGCTCATTATAGACGTTCCCCACCCTCCAAATCCAATGCCTCGCTTCTAC
GTTAGCGGCGTCTCGGCAACACGCAAGCCCGCAGTCCTGGTGACGCTCCA
GCTAACCCACCTTGTCTCCATTGGAGCTGAACCCGGAAAGATTCTGGCTT
CACAGTTTCAGCCGGGCCGTACCTCCCTCTCTTTCCCAAAAATCTTGGAC
ATCGAAGAACAAGACCTCCTCTCCTCCCTACTTCCCACTCTCCTTCCCTT
CCTCGCCGCGACCACGCCAGAGGACACCATCCTAGTGCATTGCCAAGCCG
GCCAATCACGTTCTGTTGCTGCAGTGTTGATGTACTTGATAATATGTCAA
GGCCTGACCTTGGTGGATGCCCACGCCCAGGTAGCTCGGTCTCGGCCAGG
GGTTTGTGTAAATCCGGGTTTCCTCCGTCAGCTTTTGTTTTTGGAAGACT
TTCCCGGCTTGCGTCGCTCTCCTTTCACAGGAACCAAATGTGGCGCCAAT
GAATTTATCTCCGCTTCTTTTACTGACACGGAGAGCAAAGCAACCGCACT
CATTCAGAGTAGCCGCAGAAGAAGTGCAATGCGCGGTTCATGGGCCGCCG
AGCACCGCCTTTACCTCTTGAATAATCTCTTTCGAGTCACATGTCGTCTT
TCCTCTTTGGAGCCAGTACAGGTCTGGGAAACAATCGACAATGAACACAG
AAAGCTGGTAAAGTTGTTGATCAGGTATGGGCATGCTTGTCGCAAGGGTC
CGCCGGTGGAAGAGGAAGGGGGGGGGGAGGAGGAAGAGGAGGAAGTGTTG
GGAGAGGAAGAAGAGGCAAGGGGAAAAGGGTGGGTCGCGCGCTGTCGACA
TTGCCATCAGCTACTATGTACAGAAGAAGATGTAGTGAGGCATGCGGGGG
AGGAAATTGATATTTTGAAGAAGAGGACGAGGGTGAGAGCGCGAGGCATA
GGCAGAGCAGCACCAGCAGCTGAGAGTGTGTGGGGGTACGGGAGGGAGTT
CGAGCGGCAGCCGGTGCTGCATTTGTTGCCCCTATCGCATGCTTGTGTGA
AGACTAGGAAAGCAGAGGAGGAGAAGAGAAAGAAGGAGGGGAAAAGGAGG
AATATTGAAAATGGAGAGGATGAGGGAAAAGGGGAGGGCGGCAGACATGG
AAAAAGCAGGACGACTTGTCGTCATCGTTATGTGTTCCCCCCACCATGGG
TCATGCCGTCCTTGCTTACATCAGAAAGGGGAGGAGATGGCATCAGTATC
ACAGCCACTGACGCCAAGGAAGGGACGATGAATGTGAGAGGAGGAATAGG
GAGGGGGGGAGGGAAGGAAGGAGGGATGGTCGATCTCAGGTGCCCGGGTC
GGCATTGTGGCGCTGTGGTGGGGTCAATGCAGGCACGACCGGAGGAAGGA
AGGAGGGAGAAAGGAGGATGCGAGTGCTTAGAGCCGTTGCCAGTGGTAGT
GGTGAGATTTTGGGAGGAGGCATTGATGAATGAATGCGCGAGAGAGGAGC
GAGGGAGAGAGGGATGGAAGGAAAGAGAAGATCACGGGGGTCTGTGTGTG
AAATAAAAGAGAGCGGAGGAGCGAAAAGTGTACAGTGTAAACATAACCAT
ACTGAATGCCCCACTGACAAGAAGCAGCAGTTTCTGAGTGGGCGAGAGAG
CAGACAGGTAAACAAGCATCATCGTCTTGGTCCTTAT
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Coding sequence (CDS) from alignment at scaffold_4:1033940..1036176-

>mRNA_2195 ID=mRNA_2195|Name=jgi.p|Nanoce1779_2|296261|organism=Nannochloropsis oceanica|type=CDS|length=1980bp|location=Sequence derived from alignment at scaffold_4:1033940..1036176- (Nannochloropsis oceanica)
ATGATGAAAGCGCCCGCGACAAACGTGGATGAGAGGGGGGCGAGTCAGCC
TTCTGCCTGTGAATTGTTTGGAAGTGAGAGGCGTAATGAGTATGCGGTGT
TTGTGTGCGGTGACCGCACACGGCATGGAGTCGCCAAGGCATATGTTCCA
GACCTCACTTTCCGACATTCATGCCCGTGCTATACAGACACAAGTACAGA
GGCTGTTACGACATTCGCAAGGATCAGGAGGGCGCGTCGATCGCTTGCTG
CGGTGCTGGTTGTGCCTCTTCACGTCTCCAAAAACACGACGAGAGCGAAC
CTCCCACCCCCATTGCTCCTCCTTCAAAACCCCTTCCACCATAACGCATT
AACCAGTTGCACAATTATGGAGACCACTGCCACTGCACCTGTCGAAGACA
ATTTTGAAGCCCTGGACATGGAAATGCTCATTATAGACGTTCCCCACCCT
CCAAATCCAATGCCTCGCTTCTACGTTAGCGGCGTCTCGGCAACACGCAA
GCCCGCAGTCCTGGTGACGCTCCAGCTAACCCACCTTGTCTCCATTGGAG
CTGAACCCGGAAAGATTCTGGCTTCACAGTTTCAGCCGGGCCGTACCTCC
CTCTCTTTCCCAAAAATCTTGGACATCGAAGAACAAGACCTCCTCTCCTC
CCTACTTCCCACTCTCCTTCCCTTCCTCGCCGCGACCACGCCAGAGGACA
CCATCCTAGTGCATTGCCAAGCCGGCCAATCACGTTCTGTTGCTGCAGTG
TTGATGTACTTGATAATATGTCAAGGCCTGACCTTGGTGGATGCCCACGC
CCAGGTAGCTCGGTCTCGGCCAGGGGTTTGTGTAAATCCGGGTTTCCTCC
GTCAGCTTTTGTTTTTGGAAGACTTTCCCGGCTTGCGTCGCTCTCCTTTC
ACAGGAACCAAATGTGGCGCCAATGAATTTATCTCCGCTTCTTTTACTGA
CACGGAGAGCAAAGCAACCGCACTCATTCAGAGTAGCCGCAGAAGAAGTG
CAATGCGCGGTTCATGGGCCGCCGAGCACCGCCTTTACCTCTTGAATAAT
CTCTTTCGAGTCACATGTCGTCTTTCCTCTTTGGAGCCAGTACAGGTCTG
GGAAACAATCGACAATGAACACAGAAAGCTGGTAAAGTTGTTGATCAGGT
ATGGGCATGCTTGTCGCAAGGGTCCGCCGGTGGAAGAGGAAGGGGGGGGG
GAGGAGGAAGAGGAGGAAGTGTTGGGAGAGGAAGAAGAGGCAAGGGGAAA
AGGGTGGGTCGCGCGCTGTCGACATTGCCATCAGCTACTATGTACAGAAG
AAGATGTAGTGAGGCATGCGGGGGAGGAAATTGATATTTTGAAGAAGAGG
ACGAGGGTGAGAGCGCGAGGCATAGGCAGAGCAGCACCAGCAGCTGAGAG
TGTGTGGGGGTACGGGAGGGAGTTCGAGCGGCAGCCGGTGCTGCATTTGT
TGCCCCTATCGCATGCTTGTGTGAAGACTAGGAAAGCAGAGGAGGAGAAG
AGAAAGAAGGAGGGGAAAAGGAGGAATATTGAAAATGGAGAGGATGAGGG
AAAAGGGGAGGGCGGCAGACATGGAAAAAGCAGGACGACTTGTCGTCATC
GTTATGTGTTCCCCCCACCATGGGTCATGCCGTCCTTGCTTACATCAGAA
AGGGGAGGAGATGGCATCAGTATCACAGCCACTGACGCCAAGGAAGGGAC
GATGAATGTGAGAGGAGGAATAGGGAGGGGGGGAGGGAAGGAAGGAGGGA
TGGTCGATCTCAGGTGCCCGGGTCGGCATTGTGGCGCTGTGGTGGGGTCA
ATGCAGGCACGACCGGAGGAAGGAAGGAGGGAGAAAGGAGGATGCGAGTG
CTTAGAGCCGTTGCCAGTGGTAGTGGTGAGATTTTGGGAGGAGGCATTGA
TGAATGAATGCGCGAGAGAGGAGCGAGGGAGAGAGGGATGGAAGGAAAGA
GAAGATCACGGGGGTCTGTGTGTGAAATAA
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Synonyms
Publications