jgi.p|Nanoce1779_2|578544, mRNA_1962 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|578544
Unique NamemRNA_1962
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1498
Alignment locationscaffold_4:445612..447268 +

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Properties
Property NameValue
TranscriptId578630
TrackFilteredModels2
ProteinId578544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:445612..447268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578544gene_1962Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578544mRNA_1962-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1962CDS_1962Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1962 ID=mRNA_1962|Name=jgi.p|Nanoce1779_2|578544|organism=Nannochloropsis oceanica|type=mRNA|length=1498bp
ACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTTACGCC
CATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAGCACCA
CCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGATGGTG
GTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGGGAGGA
GGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGTGGACG
TGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACGGAGCG
GAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTCTGAAG
CACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAGCGAGG
AGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCGCGATT
TCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAATAGAT
AATTTCTCCTGAATCTGCTTTCCTTTTCCCGGCCTTGTAAAATATTTCTG
CAAGGACAAGAATCGTCATTCAATCTCTTCAGTAACCGTGTCTCCCCCCT
CCGCGCACGTTTCAACAACACCGAGGTCCTACATGGGAGGGAGGCGAATT
CGCTATTGCCTACTATTATGGGCACCCTTCACACCTGAGCTGCGGCTACG
TAGCCATGCCCGGGTGTCGTATTGGTGTAAGTGTTTGCAGTGCGGGGCTT
GTAGAGGGTGGGGAGGTTGGCGAAGACGCACGCCATCACTGTCCGTCTTG
CCCACCATCTCTCACAAATCTGAGCACAATACGTTTCCACGCACACTCAT
ACCCACGCCCATCCCAGGAAGACAAAGGCCAAGCACGTCCACGCCCTCAT
GTACATCCGTGCCCTTTCCCCAGCGTCTAACAAGGAGAAGGACCCTTACG
CCAAGAAAAAGGAGGTCAATTACCAGATTCTGGTACGTTTTTGTGGGATT
GTTTCGAGCCACAGAGTCTCAAAAATAATGTTGGCGTTTTTCTAGGCATG
ATTACTTAACCTTTTCGAGGAACTCGCCATAAACATGCAAAGAGGCTGCA
CCCGAGACTCAACACGGACCATCGCGTTCCTGTATGTCTCGGCACGTGTA
TTTGGTTATCTCCGTTCGACACATTCAGAACGACCGCTCAATCTCTACAT
TTCATATTACGACAGATGCCCCTCATTTATGCGCCCATTCTTCCCTTAAT
CCGCATTGGACTCCGAGGACGCATACCTCAGAGACAGATCGACATCATTT
TTGGGGGGGCCGTCCTAACGGCATTGGGGCACGCTGGGTATATCATGGCC
TCAGACTCGTCTGTGTAGCGCCTGTCTGGCGTGTTGGAAATGTTAACATG
GCAATTGAGTGGATTGCACAATTTTGTAGGCTGGCCGTGAGAGGGCGAAA
AGAAAATGAACATAACTAGTACGTCTGCTCTCGCTTGCATGGCTGGTC
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protein sequence of jgi.p|Nanoce1779_2|578544

>mRNA_1962-protein ID=mRNA_1962-protein|Name=jgi.p|Nanoce1779_2|578544|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MGGRRIRYCLLLWAPFTPELRLRSHARVSYWCKCLQCGACRGWGGWRRRT
PSLSVLPTISHKSEHNTFPRTLIPTPIPGRQRPSTSTPSCTSVPFPQRLT
RRRTLTPRKRRSITRFWYVFVGLFRATESQK*
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mRNA from alignment at scaffold_4:445612..447268+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1962 ID=mRNA_1962|Name=jgi.p|Nanoce1779_2|578544|organism=Nannochloropsis oceanica|type=mRNA|length=1657bp|location=Sequence derived from alignment at scaffold_4:445612..447268+ (Nannochloropsis oceanica)
ACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTTACGCC
CATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAGCACCA
CCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGATGGTG
GTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGGGAGGA
GGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGTGGACG
TGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACGGAGCG
GAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTCTGAAG
CACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAGCGAGG
AGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCGCGATT
TCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAATAGAT
AATTTCTCCTGAATCTGCTTTCCTTTTCCCGGCCTTGTAAAATATTTCTG
CAAGGACAAGAATCGTCATTCAATCTCTTCAGTAACCGTGTCTCCCCCCT
CCGCGCACGTTTCAACAACACCGAGGTCCTACATGGGAGGGAGGCGAATT
CGCTATTGCCTACTATTATGGGCACCCTTCACACCTGAGCTGCGGCTACG
TAGCCATGCCCGGGTGTCGTATTGGTGTAAGTGTTTGCAGTGCGGGGCTT
GTAGAGGGTGGGGAGGTTGGCGAAGACGCACGCCATCACTGTCCGTCTTG
CCCACCATCTCTCACAAATCTGAGCACAATACGTTTCCACGCACACTCAT
ACCCACGCCCATCCCAGGAAGACAAAGGCCAAGCACGTCCACGCCCTCAT
GTACATCCGTGCCCTTTCCCCAGCGTCTAACAAGGAGAAGGACCCTTACG
CCAAGAAAAAGGAGGTCAATTACCAGATTCTGGTACGTTTTTGTGGGATT
GTTTCGAGCCACAGAGTCTCAAAAATAATGTTGGCGTTTTTCTAGGCATG
ATTACTTAACCTTTTCGAGGAACTCGCCATAAACATGCAAAGAGGCTGCA
CCCGAGACTCAACACGGACCATCGCGTTCCTGTATGTCTCGGCACGTGTA
TTTGGTTATCTCCGTTCGACACATTCAGAACGACCGCTCAATCTCTACAT
TTCATATTACGACAGATGCCCCTCATTTATGCGCCCATTCTTCCCTTAAT
CCGCATTGGACTCCGAGGACGCATACCTCAGAGACAGATCGACATCATTT
TTGGGGGGGCCGTCCTAACGGCATTGGGGCACGCTGGGTAAGCAATGATG
AAATTGGTTGGGGAAGGAGCAATTTGTGCGCTGCCATTGCGTTGTTGCAT
CTATGTTATGAGCGTTAAATGCATGGGAATTGCCGTTTCAACTTGCTTGA
CCTACGATTTACTCGAGCTCGTACATACACACATGCACCCACACAGGTAT
ATCATGGCCTCAGACTCGTCTGTGTAGCGCCTGTCTGGCGTGTTGGAAAT
GTTAACATGGCAATTGAGTGGATTGCACAATTTTGTAGGCTGGCCGTGAG
AGGGCGAAAAGAAAATGAACATAACTAGTACGTCTGCTCTCGCTTGCATG
GCTGGTC
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Coding sequence (CDS) from alignment at scaffold_4:445612..447268+

>mRNA_1962 ID=mRNA_1962|Name=jgi.p|Nanoce1779_2|578544|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_4:445612..447268+ (Nannochloropsis oceanica)
ATGGGAGGGAGGCGAATTCGCTATTGCCTACTATTATGGGCACCCTTCAC
ACCTGAGCTGCGGCTACGTAGCCATGCCCGGGTGTCGTATTGGTGTAAGT
GTTTGCAGTGCGGGGCTTGTAGAGGGTGGGGAGGTTGGCGAAGACGCACG
CCATCACTGTCCGTCTTGCCCACCATCTCTCACAAATCTGAGCACAATAC
GTTTCCACGCACACTCATACCCACGCCCATCCCAGGAAGACAAAGGCCAA
GCACGTCCACGCCCTCATGTACATCCGTGCCCTTTCCCCAGCGTCTAACA
AGGAGAAGGACCCTTACGCCAAGAAAAAGGAGGTCAATTACCAGATTCTG
GTACGTTTTTGTGGGATTGTTTCGAGCCACAGAGTCTCAAAAATAA
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Synonyms
Publications