jgi.p|Nanoce1779_2|608282, mRNA_9908 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608282
Unique NamemRNA_9908
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length555
Alignment locationscaffold_41:46957..47511 +

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Properties
Property NameValue
TranscriptId608368
TrackFilteredModels2
ProteinId608282
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_41supercontigscaffold_41:46957..47511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608282gene_9908Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608282mRNA_9908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9908CDS_9908Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Nanoce1779_2|608282|organism=Nannochloropsis oceanica|type=mRNA|length=555bp
AAAACAACCCACAACCTCGTCCCAATCCATCGACCTCGGTTGCTTGTTGT
TTGTTTGCTTGGTTTTTTTCTTCACTCTCTTCTCGTATGTGTCCTTTCTC
TCTGTCCATCGTGTATGTGGTCGGCTTTGTTGTGCTGACATCCGAAGGCA
GGCGGCCCATGCGGATAGTGCGACAAACGTTTCTCTGGCCAGCAGCGGCG
CATCCCTGCTTCCCCGTTCTCCTCCTCCACAGTGTCTGTGTGACGGGAGC
GATCTTTCTTGTCACTTCTACCACGATGCCCTCCCCCACCAGTCCTGTCT
GTGTATGTACGGCGGTGAACACCACAGGCAGTGACATCATCGTCTTGCAA
AGTTTACGATTTCCGGCCCCGTCCCACTTCTTGCCTTGACACCAGACACG
ACATATGCACAAGCATGCACACACAACTATATACACACTCATCATCCTTT
CACACCCCACGACACCTCATACACACAGCACCCACCCTCTCTTTCAAGAA
ACATGAAGTTGACTGCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTT
TCCGC
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protein sequence of jgi.p|Nanoce1779_2|608282

>mRNA_9908-protein ID=mRNA_9908-protein|Name=jgi.p|Nanoce1779_2|608282|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MCPFSLSIVYVVGFVVLTSEGRRPMRIVRQTFLWPAAAHPCFPVLLLHSV
CVTGAIFLVTSTTMPSPTSPVCVCTAVNTTGSDIIVLQSLRFPAPSHFLP
*
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mRNA from alignment at scaffold_41:46957..47511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Nanoce1779_2|608282|organism=Nannochloropsis oceanica|type=mRNA|length=555bp|location=Sequence derived from alignment at scaffold_41:46957..47511+ (Nannochloropsis oceanica)
AAAACAACCCACAACCTCGTCCCAATCCATCGACCTCGGTTGCTTGTTGT
TTGTTTGCTTGGTTTTTTTCTTCACTCTCTTCTCGTATGTGTCCTTTCTC
TCTGTCCATCGTGTATGTGGTCGGCTTTGTTGTGCTGACATCCGAAGGCA
GGCGGCCCATGCGGATAGTGCGACAAACGTTTCTCTGGCCAGCAGCGGCG
CATCCCTGCTTCCCCGTTCTCCTCCTCCACAGTGTCTGTGTGACGGGAGC
GATCTTTCTTGTCACTTCTACCACGATGCCCTCCCCCACCAGTCCTGTCT
GTGTATGTACGGCGGTGAACACCACAGGCAGTGACATCATCGTCTTGCAA
AGTTTACGATTTCCGGCCCCGTCCCACTTCTTGCCTTGACACCAGACACG
ACATATGCACAAGCATGCACACACAACTATATACACACTCATCATCCTTT
CACACCCCACGACACCTCATACACACAGCACCCACCCTCTCTTTCAAGAA
ACATGAAGTTGACTGCCTCCTCCGTCCTCCTGGCCGGCGTCGCCCTCTTT
TCCGC
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Coding sequence (CDS) from alignment at scaffold_41:46957..47511+

>mRNA_9908 ID=mRNA_9908|Name=jgi.p|Nanoce1779_2|608282|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_41:46957..47511+ (Nannochloropsis oceanica)
ATGTGTCCTTTCTCTCTGTCCATCGTGTATGTGGTCGGCTTTGTTGTGCT
GACATCCGAAGGCAGGCGGCCCATGCGGATAGTGCGACAAACGTTTCTCT
GGCCAGCAGCGGCGCATCCCTGCTTCCCCGTTCTCCTCCTCCACAGTGTC
TGTGTGACGGGAGCGATCTTTCTTGTCACTTCTACCACGATGCCCTCCCC
CACCAGTCCTGTCTGTGTATGTACGGCGGTGAACACCACAGGCAGTGACA
TCATCGTCTTGCAAAGTTTACGATTTCCGGCCCCGTCCCACTTCTTGCCT
TGA
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Synonyms
Publications