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Properties
| Property Name | Value |
|---|
| TranscriptId | 316552 |
| Track | FilteredModels2 |
| ProteinId | 316466 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:45615..47774 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10073 ID=mRNA_10073|Name=jgi.p|Nanoce1779_2|316466|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
GGGGGGGGACAACGCTTCGAAACAAGACAAGGTGGCATATCTGCGACACT
AAGGGCCGCGATGGCTTAGACATTCCAATGGGTTCAACCAGGCAAGCAGC
ATCGCCGATGTTGATCGGCACTTCACTCCACACACTTCCCCACATTACTC
TCACGTGCCGCACACACACCCCTCACAAGCAGAGACAGGTACGCCAGCCT
TGAAGTTCTAGTGGATAGGGGTACCTGCGAGCGGTGCAAAGAAAATCGTC
CTCTCCCTCCATCCCTCCCGCGCCATGAACCACAAGGAGCATACCCTGGG
AGAACTGGAACTCCGCCCGCTCCACGCCAAGGAAGCCCTGCAATGCATGC
TCCACTCCATCCTCTTCCTACGCGCGCCTAATGTGGTGCGACCCCGTGAG
GTACACTGCAAGCACCTCCGACTCTCCTACGCCAAACTCGAACGCCCGTC
TTCCTCCTCTTCCTCCTCCTCTTCCTCGGGCGGCTCCTCCCTGGCCCGAG
TAGACGAGGTGGTAGACAGCGCCATTGACGCGTGTCTCCGAAATCTTACG
CCGGCAGGACCCAAATTGAATAAAGGGCGCCTTATTCTTACCTTCTACGA
GCGACGGCGGACACAGTCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGG
TTGTGTTCGAGGAGTGGGTCATTCCCTTCCTCATCGACAACATCGGCACC
ACCAGCCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAGGTTTTGTGGG
CGTGGACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCCTCCTCCTCTT
CCACCCTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGAGGATGCTGCG
AGAGTCGTGGAGCAGCAACGGGTGCAAGCTCGGACAGAAGCCCTTCTTCG
ATCCCGCCTTATGGATGTCTTCACCCTCGTGAATGGTAGCATCGATCACA
TCCCGCCTGTCAGCTACTTGTTCGAGATCTCTCACGGCGCGGCTTCCCGC
CGAGACCGAGCCCAAGACCTGACCACAAAAATCAGAAACAGTCCAGCACT
GATCAACAACAGCCTCTGAAGAAGGGAGGGAGGGAGGGAGAGAGGGAAGA
AGGACACGGCTCAAGAATTTGC back to topprotein sequence of jgi.p|Nanoce1779_2|316466 >mRNA_10073-protein ID=mRNA_10073-protein|Name=jgi.p|Nanoce1779_2|316466|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MNHKEHTLGELELRPLHAKEALQCMLHSILFLRAPNVVRPREVHCKHLRL
SYAKLERPSSSSSSSSSSGGSSLARVDEVVDSAIDACLRNLTPAGPKLNK
GRLILTFYERRRTQSFFRLIQNEERVVFEEWVIPFLIDNIGTTSPISSSL
SHSDEGFVGVDAGDFFSPPRPPSSSSTLTPASSCDGREEDAARVVEQQRV
QARTEALLRSRLMDVFTLVNGSIDHIPPVSYLFEISHGAASRRDRAQDLT
TKIRNSPALINNSL* back to topmRNA from alignment at scaffold_46:45615..47774- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10073 ID=mRNA_10073|Name=jgi.p|Nanoce1779_2|316466|organism=Nannochloropsis oceanica|type=mRNA|length=2160bp|location=Sequence derived from alignment at scaffold_46:45615..47774- (Nannochloropsis oceanica)
GGGGGGGGACAACGCTTCGAAACAAGACAAGGTGGCATATCTGCGACACT
AAGGGCCGCGATGGCTTAGACATTCCAATGGGTTCAACCAGGCAAGCAGC
ATCGCCGATGTTGATCGGCACTTCACTCCACACACTTCCCCACATTACTC
TCACGTGCCGCACACACACCCCTCACAAGCAGAGACAGGTACGCCAGCCT
TGAAGTTCTAGTGGATAGGGGTACCTGCGAGCGGTGCAAAGAAAATCGTC
CTCTCCCTCCATCCCTCCCGCGCCATGAACCACAAGGAGCATACCCTGGG
AGAACTGGAACTCCGCCCGCTCCACGCCAAGGAAGCCCTGCAATGCATGC
TCCACTCCATCCTCTTCCTACGCGCGCCTAATGTGGTGCGACCCCGTGAG
GTATGTTTGAGGGTGCTTATAAAGGGAGAGAAAGGGGAGAGGCATGAGAG
CAAGCGAGAGGAGAGGGAGGGACGTCTCTTAGTGCATCCTGTAGGCCAAG
GTGGCATGATACTACTCACAATCGTGCATTTAATTAATGAAAGCTAGCGT
AACTTATGTTGAACGGGCTGTCAGTGCAGAAGTAGGCAGGCCTGAAAGGG
GGGCAGGAATTGAGTCAACGGGCGCGAGAGGCAAAGCACATATGTTGGAC
AAACGCCTAGAGTGTCACCCACCCAATCACCGTCGGACGATTAAATAGGT
ACACTGCAAGCACCTCCGACTCTCCTACGCCAAACTCGAACGCCCGTCTT
CCTCCTCTTCCTCCTCCTCTTCCTCGGGCGGCTCCTCCCTGGCCCGAGTA
GACGAGGTGGTAGACAGCGCCATTGACGCGTGTCTCCGAAATCTTACGCC
GGCAGGACCCAAATTGAATAAAGGTAAGTACTAACAACAGCAACAGCTGC
AGTAGTATTTGCTTTGATGATGTGGAAGAGTAGGCATGCGTAGGGAGAGG
GCGTGCGAAGTGATCCGAGATAACCTTACATTCTCCTCCTTTCTCAATTC
AATTTATCGATGCCCCCTCCCTCTATCCCTCCCTCCCTCCCTCTTTCCCT
CTTTTCCTTCCTCACTCCACCGCCACATGAAAGGGCGCCTTATTCTTACC
TTCTACGAGCGACGGCGGACACAGTCGTTCTTCCGGTTAATCCAAAACGA
GGAGCGGGTTGTGTTCGAGGAGTGGGTCATTCCCTTCCTCATCGACAACA
TCGGTATGTATCCCTATATCTCTCCCTCTCCCTCACCCTCTCCCCAAACC
TTGCCTGCTTTTCTTCACTCCCCGCCCTGAGACTTTTCTTACTCATGGGC
TGAGCGATAAAGGACTCGGCTAATCCGCATTTTAGCCTCTCATACGCCTT
CGCTTCAACCCCTCCTCTATTCCCTCCCTTTATCCCACCCAGGCACCACC
AGCCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAGGTTTTGTGGGCGT
GGACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCCTCCTCCTCTTCCA
CCCTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGAGGATGCTGCGAGA
GGTGCATTTCTTTCTAGCCCTCCCTCCCTCCCACCCTCTTTTTCTCCGCT
GGCAAAGTAATGATACGCTCAACCCTCCCTCCGTCCCCGCCCCCCTCTCC
CCCTCCCTCCCTCGCCAGTCGTGGAGCAGCAACGGGTGCAAGCTCGGACA
GAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCACCCTCGTGAATGG
TAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCGAGGTAGGGGAGG
GCAGGGAGGGAGCAGGGAGGGAGGGTGGAAGGGAGGAGGAGATGTTGTGT
CCGTGCGGCTCTTGGCTGGAGGCCCCCGGCCTGTGCTGCCACTGGTGCTG
TCATTGGTGCTGTCGCTTAAGCTGCTTGGGTAACACCATTTTTTATTCCA
ACGACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCC
CTCTTTTTTTCCAGATCTCTCACGGCGCGGCTTCCCGCCGAGACCGAGCC
CAAGACCTGACCACAAAAATCAGAAACAGTCCAGCACTGATCAACAACAG
CCTCTGAAGAAGGGAGGGAGGGAGGGAGAGAGGGAAGAAGGACACGGCTC
AAGAATTTGC back to topCoding sequence (CDS) from alignment at scaffold_46:45615..47774- >mRNA_10073 ID=mRNA_10073|Name=jgi.p|Nanoce1779_2|316466|organism=Nannochloropsis oceanica|type=CDS|length=4770bp|location=Sequence derived from alignment at scaffold_46:45615..47774- (Nannochloropsis oceanica)
ATCTCTCACGGCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACCAC
AAAAATCAGAAACAGTCCAGCACTGATCAACAACAGCCTCTGATCGTGGA
GCAGCAACGGGTGCAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTA
TGGATGTCTTCACCCTCGTGAATGGTAGCATCGATCACATCCCGCCTGTC
AGCTACTTGTTCGAGGCACCACCAGCCCCATCTCTTCCTCCCTCTCTCAC
TCTGACGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTCCCCTCC
CCGCCCGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCATGCGACG
GGAGAGAAGAGGATGCTGCGAGAGGGCGCCTTATTCTTACCTTCTACGAG
CGACGGCGGACACAGTCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGT
TGTGTTCGAGGAGTGGGTCATTCCCTTCCTCATCGACAACATCGGTACAC
TGCAAGCACCTCCGACTCTCCTACGCCAAACTCGAACGCCCGTCTTCCTC
CTCTTCCTCCTCCTCTTCCTCGGGCGGCTCCTCCCTGGCCCGAGTAGACG
AGGTGGTAGACAGCGCCATTGACGCGTGTCTCCGAAATCTTACGCCGGCA
GGACCCAAATTGAATAAAGATGAACCACAAGGAGCATACCCTGGGAGAAC
TGGAACTCCGCCCGCTCCACGCCAAGGAAGCCCTGCAATGCATGCTCCAC
TCCATCCTCTTCCTACGCGCGCCTAATGTGGTGCGACCCCGTGAGATCTC
TCACGGCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACCACAAAAA
TCAGAAACAGTCCAGCACTGATCAACAACAGCCTCTGATCGTGGAGCAGC
AACGGGTGCAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTATGGAT
GTCTTCACCCTCGTGAATGGTAGCATCGATCACATCCCGCCTGTCAGCTA
CTTGTTCGAGGCACCACCAGCCCCATCTCTTCCTCCCTCTCTCACTCTGA
CGAAGGTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTCCCCTCCCCGCC
CGCCCTCCTCCTCTTCCACCCTCACCCCGGCCTCTTCATGCGACGGGAGA
GAAGAGGATGCTGCGAGAGGGCGCCTTATTCTTACCTTCTACGAGCGACG
GCGGACACAGTCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGT
TCGAGGAGTGGGTCATTCCCTTCCTCATCGACAACATCGGTACACTGCAA
GCACCTCCGACTCTCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTT
CCTCCTCCTCTTCCTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTG
GTAGACAGCGCCATTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACC
CAAATTGAATAAAGATGAACCACAAGGAGCATACCCTGGGAGAACTGGAA
CTCCGCCCGCTCCACGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCAT
CCTCTTCCTACGCGCGCCTAATGTGGTGCGACCCCGTGAGATCTCTCACG
GCGCGGCTTCCCGCCGAGACCGAGCCCAAGACCTGACCACAAAAATCAGA
AACAGTCCAGCACTGATCAACAACAGCCTCTGATCGTGGAGCAGCAACGG
GTGCAAGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTT
CACCCTCGTGAATGGTAGCATCGATCACATCCCGCCTGTCAGCTACTTGT
TCGAGGCACCACCAGCCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAG
GTTTTGTGGGCGTGGACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCC
TCCTCCTCTTCCACCCTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGA
GGATGCTGCGAGAGGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGA
CACAGTCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAG
GAGTGGGTCATTCCCTTCCTCATCGACAACATCGGTACACTGCAAGCACC
TCCGACTCTCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCC
TCCTCTTCCTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGA
CAGCGCCATTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAAT
TGAATAAAGATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCG
CCCGCTCCACGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCT
TCCTACGCGCGCCTAATGTGGTGCGACCCCGTGAGATCTCTCACGGCGCG
GCTTCCCGCCGAGACCGAGCCCAAGACCTGACCACAAAAATCAGAAACAG
TCCAGCACTGATCAACAACAGCCTCTGATCGTGGAGCAGCAACGGGTGCA
AGCTCGGACAGAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCACCC
TCGTGAATGGTAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCGAG
GCACCACCAGCCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAGGTTTT
GTGGGCGTGGACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCCTCCTC
CTCTTCCACCCTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGAGGATG
CTGCGAGAGGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAG
TCGTTCTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTG
GGTCATTCCCTTCCTCATCGACAACATCGGTACACTGCAAGCACCTCCGA
CTCTCCTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTC
TTCCTCGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCG
CCATTGACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAAT
AAAGATGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGC
TCCACGCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTA
CGCGCGCCTAATGTGGTGCGACCCCGTGAGATCTCTCACGGCGCGGCTTC
CCGCCGAGACCGAGCCCAAGACCTGACCACAAAAATCAGAAACAGTCCAG
CACTGATCAACAACAGCCTCTGATCGTGGAGCAGCAACGGGTGCAAGCTC
GGACAGAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCACCCTCGTG
AATGGTAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCGAGGCACC
ACCAGCCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAGGTTTTGTGGG
CGTGGACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCCTCCTCCTCTT
CCACCCTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGAGGATGCTGCG
AGAGGGCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTT
CTTCCGGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCA
TTCCCTTCCTCATCGACAACATCGGTACACTGCAAGCACCTCCGACTCTC
CTACGCCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTCCT
CGGGCGGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCATT
GACGCGTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAAGA
TGAACCACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCAC
GCCAAGGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCGC
GCCTAATGTGGTGCGACCCCGTGAGATCTCTCACGGCGCGGCTTCCCGCC
GAGACCGAGCCCAAGACCTGACCACAAAAATCAGAAACAGTCCAGCACTG
ATCAACAACAGCCTCTGATCGTGGAGCAGCAACGGGTGCAAGCTCGGACA
GAAGCCCTTCTTCGATCCCGCCTTATGGATGTCTTCACCCTCGTGAATGG
TAGCATCGATCACATCCCGCCTGTCAGCTACTTGTTCGAGGCACCACCAG
CCCCATCTCTTCCTCCCTCTCTCACTCTGACGAAGGTTTTGTGGGCGTGG
ACGCCGGCGACTTTTTCTCCCCTCCCCGCCCGCCCTCCTCCTCTTCCACC
CTCACCCCGGCCTCTTCATGCGACGGGAGAGAAGAGGATGCTGCGAGAGG
GCGCCTTATTCTTACCTTCTACGAGCGACGGCGGACACAGTCGTTCTTCC
GGTTAATCCAAAACGAGGAGCGGGTTGTGTTCGAGGAGTGGGTCATTCCC
TTCCTCATCGACAACATCGGTACACTGCAAGCACCTCCGACTCTCCTACG
CCAAACTCGAACGCCCGTCTTCCTCCTCTTCCTCCTCCTCTTCCTCGGGC
GGCTCCTCCCTGGCCCGAGTAGACGAGGTGGTAGACAGCGCCATTGACGC
GTGTCTCCGAAATCTTACGCCGGCAGGACCCAAATTGAATAAAGATGAAC
CACAAGGAGCATACCCTGGGAGAACTGGAACTCCGCCCGCTCCACGCCAA
GGAAGCCCTGCAATGCATGCTCCACTCCATCCTCTTCCTACGCGCGCCTA
ATGTGGTGCGACCCCGTGAG back to top
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