jgi.p|Nanoce1779_2|609963, mRNA_10159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|609963
Unique NamemRNA_10159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1406
Alignment locationscaffold_48:4881..6286 +

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Properties
Property NameValue
TranscriptId610049
TrackFilteredModels2
ProteinId609963
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:4881..6286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609963gene_10159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|609963mRNA_10159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10159CDS_10159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10159 ID=mRNA_10159|Name=jgi.p|Nanoce1779_2|609963|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
CAGAATCCCGTACCTTTCTCCCTCCCATGCGCGTTGTCCCGCGCGCTCAA
CAACTCTCATTGGTCGCCCTTGCACTGCAAAACCCGTATGGCGAGCTCCG
TGAATGACACCTTCGATGCTATCACCAGAGGCGTCTTTGTGCTCCTAGCT
CCCTCCATCCCGGTCTTTACTTCCCTGCCCAGGCACGAGGTATGTACCGA
TCGAAAAAAAGAGTGGAAGATTGTGCAAAAGCAAACAAACGATTCAAACA
AGTTCAGTCCCCATATACGTTTGCAATGTTCCCAATAGCAATATCCTCAG
CTTTCATATCTGATCCTTCATTGCCTGTGCTACTTATTTTCCATCCTAGA
ACCCACCTTTTCAAAACAATCAGTACATATGCAGACATATCGAGGGGCTT
TCCTATTCCGCTCTATTGCACACTTTTTTCTCTTTTTTCCCCTGACCCTT
CCTTACAAGCTCATCCAAGGACATTCCCAGCTTCGACTCCAGCGCCATAC
TAATTGGAAAGGCTATAAAGGAGATGTAACCCTAACAGAATGTTTAATAA
AAAGATGTCATCCGGAGAAGATTCGGAAAAAAGAAAATGGAAACGTTACA
GCGATATTTTGTATTGACTGTAGGGTTAGGGTTAGGGTTATGCAATACAA
ACACTCTGTTAGGAGTAGGGTTGCTCGTCAGTTTTTTTACAAGATGGTGG
CCCCTTGCCACGACTGTCAAGCTTGTTCTACTATACTTTTGTTGCCTGCT
GCTAGTCTTGTCTCACAAACTTAAAATTCCCTCCTCTCTACGTCCTTTAG
TATGACTTGGGATCCTGAGCAACCCCCTTCAAGTTCAGTTGCTACCTTTT
ATGCTCTCTGACCTCCCTATCTACTCTCTTTACATTATTCGCGTCACATT
CAGTGCTGCCTTAAGGGGCCGATGGTCAGAAATCCTCTCGCCAAACTCTT
TCGGCCACTTCCTCGAGCACAAAGAAGGCGGGTACAGCGCCACATCGACG
ACTTCCACCGACGGCAGCAGTGCGTCCACACATTCTGCGGCGCCCCCTCT
TTCTCGCCCCCACACCACTGAGGACGCCGAAGGACTGGGGGAAATAGGAG
AGGAGAAGGAAGAGAAGGAATGCGGCATTGCCCTTTCCCTTCTCTTTTCA
CGGCACCAGCTCGACGCGGGCACAAATTCTGTCCACCGCCGTTGCCCTAC
ACCTCCCATTATCCCTGGTGCTGCTCCTCGTGTTTCCTTTCCATCGCCTT
CTTCCTTCTTCTCCTGTCCCTCACCTCTCTCCGAGTCACCTCCTGCCCCC
CTTCTTCCTGACCATAGACTCTGCAAGAAGGACGACGAGAAGGACGACGA
GGCAGTAGCCAGAGGCCTGATTACTTTCCCATCCTCCAACTCCCCCTTCC
CCACCA
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protein sequence of jgi.p|Nanoce1779_2|609963

>mRNA_10159-protein ID=mRNA_10159-protein|Name=jgi.p|Nanoce1779_2|609963|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MQTYRGAFLFRSIAHFFLFFPLTLPYKLIQGHSQLRLQRHTNWKGYKGDV
TLTECLIKRCHPEKIRKKENGNVTAIFCIDCRVRVRVMQYKHSVRSRVAR
QFFYKMVAPCHDCQACSTILLLPAASLVSQT*
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mRNA from alignment at scaffold_48:4881..6286+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10159 ID=mRNA_10159|Name=jgi.p|Nanoce1779_2|609963|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp|location=Sequence derived from alignment at scaffold_48:4881..6286+ (Nannochloropsis oceanica)
CAGAATCCCGTACCTTTCTCCCTCCCATGCGCGTTGTCCCGCGCGCTCAA
CAACTCTCATTGGTCGCCCTTGCACTGCAAAACCCGTATGGCGAGCTCCG
TGAATGACACCTTCGATGCTATCACCAGAGGCGTCTTTGTGCTCCTAGCT
CCCTCCATCCCGGTCTTTACTTCCCTGCCCAGGCACGAGGTATGTACCGA
TCGAAAAAAAGAGTGGAAGATTGTGCAAAAGCAAACAAACGATTCAAACA
AGTTCAGTCCCCATATACGTTTGCAATGTTCCCAATAGCAATATCCTCAG
CTTTCATATCTGATCCTTCATTGCCTGTGCTACTTATTTTCCATCCTAGA
ACCCACCTTTTCAAAACAATCAGTACATATGCAGACATATCGAGGGGCTT
TCCTATTCCGCTCTATTGCACACTTTTTTCTCTTTTTTCCCCTGACCCTT
CCTTACAAGCTCATCCAAGGACATTCCCAGCTTCGACTCCAGCGCCATAC
TAATTGGAAAGGCTATAAAGGAGATGTAACCCTAACAGAATGTTTAATAA
AAAGATGTCATCCGGAGAAGATTCGGAAAAAAGAAAATGGAAACGTTACA
GCGATATTTTGTATTGACTGTAGGGTTAGGGTTAGGGTTATGCAATACAA
ACACTCTGTTAGGAGTAGGGTTGCTCGTCAGTTTTTTTACAAGATGGTGG
CCCCTTGCCACGACTGTCAAGCTTGTTCTACTATACTTTTGTTGCCTGCT
GCTAGTCTTGTCTCACAAACTTAAAATTCCCTCCTCTCTACGTCCTTTAG
TATGACTTGGGATCCTGAGCAACCCCCTTCAAGTTCAGTTGCTACCTTTT
ATGCTCTCTGACCTCCCTATCTACTCTCTTTACATTATTCGCGTCACATT
CAGTGCTGCCTTAAGGGGCCGATGGTCAGAAATCCTCTCGCCAAACTCTT
TCGGCCACTTCCTCGAGCACAAAGAAGGCGGGTACAGCGCCACATCGACG
ACTTCCACCGACGGCAGCAGTGCGTCCACACATTCTGCGGCGCCCCCTCT
TTCTCGCCCCCACACCACTGAGGACGCCGAAGGACTGGGGGAAATAGGAG
AGGAGAAGGAAGAGAAGGAATGCGGCATTGCCCTTTCCCTTCTCTTTTCA
CGGCACCAGCTCGACGCGGGCACAAATTCTGTCCACCGCCGTTGCCCTAC
ACCTCCCATTATCCCTGGTGCTGCTCCTCGTGTTTCCTTTCCATCGCCTT
CTTCCTTCTTCTCCTGTCCCTCACCTCTCTCCGAGTCACCTCCTGCCCCC
CTTCTTCCTGACCATAGACTCTGCAAGAAGGACGACGAGAAGGACGACGA
GGCAGTAGCCAGAGGCCTGATTACTTTCCCATCCTCCAACTCCCCCTTCC
CCACCA
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Coding sequence (CDS) from alignment at scaffold_48:4881..6286+

>mRNA_10159 ID=mRNA_10159|Name=jgi.p|Nanoce1779_2|609963|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_48:4881..6286+ (Nannochloropsis oceanica)
ATGCAGACATATCGAGGGGCTTTCCTATTCCGCTCTATTGCACACTTTTT
TCTCTTTTTTCCCCTGACCCTTCCTTACAAGCTCATCCAAGGACATTCCC
AGCTTCGACTCCAGCGCCATACTAATTGGAAAGGCTATAAAGGAGATGTA
ACCCTAACAGAATGTTTAATAAAAAGATGTCATCCGGAGAAGATTCGGAA
AAAAGAAAATGGAAACGTTACAGCGATATTTTGTATTGACTGTAGGGTTA
GGGTTAGGGTTATGCAATACAAACACTCTGTTAGGAGTAGGGTTGCTCGT
CAGTTTTTTTACAAGATGGTGGCCCCTTGCCACGACTGTCAAGCTTGTTC
TACTATACTTTTGTTGCCTGCTGCTAGTCTTGTCTCACAAACTTAA
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Synonyms
Publications