jgi.p|Nanoce1779_2|514265, mRNA_10779 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|514265
Unique NamemRNA_10779
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length543
Alignment locationscaffold_59:8594..9507 +

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Properties
Property NameValue
TranscriptId514351
TrackFilteredModels2
ProteinId514265
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_59supercontigscaffold_59:8594..9507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514265gene_10779Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|514265mRNA_10779-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10779CDS_10779Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10779 ID=mRNA_10779|Name=jgi.p|Nanoce1779_2|514265|organism=Nannochloropsis oceanica|type=mRNA|length=543bp
GCCTCGCCCCCAACATCCATCCACATATGGGTGGGCACGCGATCTCCTTC
CAAGGCCACCTACCCGGGGCTGCTCGATGTATTGGCAGCCGGCGGACAAC
CGTCAGGCCTGACGTTCCGTGAAAACGCTTTCAAGGAGGCGGAGGAGGAG
GCCAGCATTCCCAGGGGCCTGCTGGAGGGGCTTCGGCCCGGAGGAATGAT
TTCCTACAGGTACCAAACCCGGCACGGCCTGTCAACTAAGCTGCTCAAGG
TGTTCGACTTGGAGCTTCCTCCCTCCTTCGTGCCCTACAATGGTGACGGA
GAGGTGGAGAGCTTCCAGTTGATGAGTCTCACAGACGCTCTCCACAGCCT
GGAACATAATCTGGGTCTGTGGAAGCCCAATGCGGCCTTGACGGTCTTAG
ACTTCGCGGTGCGCCACGGGGCGGTGGACGCGGACCACGAGAACTACATC
GAGATCTGTCACCTGCTCCGAGGGGCCTTCACAGACAAGAAACAGAGTGA
GCCGCGGAGAAAGAGCAAAGGAGGATTCTACTTTGGGACGGAG
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protein sequence of jgi.p|Nanoce1779_2|514265

>mRNA_10779-protein ID=mRNA_10779-protein|Name=jgi.p|Nanoce1779_2|514265|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
ASPPTSIHIWVGTRSPSKATYPGLLDVLAAGGQPSGLTFRENAFKEAEEE
ASIPRGLLEGLRPGGMISYRYQTRHGLSTKLLKVFDLELPPSFVPYNGDG
EVESFQLMSLTDALHSLEHNLGLWKPNAALTVLDFAVRHGAVDADHENYI
EICHLLRGAFTDKKQSEPRRKSKGGFYFGTE
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mRNA from alignment at scaffold_59:8594..9507+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10779 ID=mRNA_10779|Name=jgi.p|Nanoce1779_2|514265|organism=Nannochloropsis oceanica|type=mRNA|length=914bp|location=Sequence derived from alignment at scaffold_59:8594..9507+ (Nannochloropsis oceanica)
GCCTCGCCCCCAACATCCATCCACATATGGGTGGGCACGCGATCTCCTTC
CAAGGCCACCTACCCGGGGCTGCTCGATGTATTGGCAGCCGGCGGACAAC
CGTCAGGCCTGACGTTCCGTGAAAACGCTTTCAAGGAGGCGGAGGAGGAG
GCCAGCATTCCCAGGGGCCTGCTGGAGGGGCTTCGGCCCGGAGGAATGAT
TTCCTACAGGTACGGAGGGAGGGAGGGAGGGAGAGAGAGAGAGGGAACGC
AGGGGAAGAAGGGAGGGGAGGAAAGATCTGGGGATTGCTCGTCTCTCGTC
GTCCTGTTCTCGATCGATTCTCATATCCACGATTCCCTCCTTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCT
TCTCCTTCCCTTCCTACCAGGTACCAAACCCGGCACGGCCTGTCAACTAA
GCTGCTCAAGGTGTTCGACTTGGAGCTTCCTCCCTCCTTCGTGCCCTACA
ATGGTGACGGAGAGGTGGAGAGCTTCCAGTTGATGAGTCTCACAGACGCT
CTCCACAGCCTGGGTAGGGAGGGAAGGAGGGAGGGAGGGAGGGAAGAAGG
AAGGGAGGGAGGGAGAAAGAAGACGTTGGTATGGAAACCTACCGTCCAAT
GGCTGCAAATGCCACGAGCTGTCTTGTGTAAGCATCTCTCACTGTCTCTT
GTGTCTCTCTCCGTCACCCTTAGAACATAATCTGGGTCTGTGGAAGCCCA
ATGCGGCCTTGACGGTCTTAGACTTCGCGGTGCGCCACGGGGCGGTGGAC
GCGGACCACGAGAACTACATCGAGATCTGTCACCTGCTCCGAGGGGCCTT
CACAGACAAGAAACAGAGTGAGCCGCGGAGAAAGAGCAAAGGAGGATTCT
ACTTTGGGACGGAG
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Coding sequence (CDS) from alignment at scaffold_59:8594..9507+

>mRNA_10779 ID=mRNA_10779|Name=jgi.p|Nanoce1779_2|514265|organism=Nannochloropsis oceanica|type=CDS|length=1629bp|location=Sequence derived from alignment at scaffold_59:8594..9507+ (Nannochloropsis oceanica)
GCCTCGCCCCCAACATCCATCCACATATGGGTGGGCACGCGATCTCCTTC
CAAGGCCACCTACCCGGGGCTGCTCGATGTATTGGCAGCCGGCGGACAAC
CGTCAGGCCTGACGTTCCGTGAAAACGCTTTCAAGGAGGCGGAGGAGGAG
GCCAGCATTCCCAGGGGCCTGCTGGAGGGGCTTCGGCCCGGAGGAATGAT
TTCCTACAGGTACCAAACCCGGCACGGCCTGTCAACTAAGCTGCTCAAGG
TGTTCGACTTGGAGCTTCCTCCCTCCTTCGTGCCCTACAATGGTGACGGA
GAGGTGGAGAGCTTCCAGTTGATGAGTCTCACAGACGCTCTCCACAGCCT
GGAACATAATCTGGGTCTGTGGAAGCCCAATGCGGCCTTGACGGTCTTAG
ACTTCGCGGTGCGCCACGGGGCGGTGGACGCGGACCACGAGAACTACATC
GAGATCTGTCACCTGCTCCGAGGGGCCTTCACAGACAAGAAACAGAGTGA
GCCGCGGAGAAAGAGCAAAGGAGGATTCTACTTTGGGACGGAGGCCTCGC
CCCCAACATCCATCCACATATGGGTGGGCACGCGATCTCCTTCCAAGGCC
ACCTACCCGGGGCTGCTCGATGTATTGGCAGCCGGCGGACAACCGTCAGG
CCTGACGTTCCGTGAAAACGCTTTCAAGGAGGCGGAGGAGGAGGCCAGCA
TTCCCAGGGGCCTGCTGGAGGGGCTTCGGCCCGGAGGAATGATTTCCTAC
AGGTACCAAACCCGGCACGGCCTGTCAACTAAGCTGCTCAAGGTGTTCGA
CTTGGAGCTTCCTCCCTCCTTCGTGCCCTACAATGGTGACGGAGAGGTGG
AGAGCTTCCAGTTGATGAGTCTCACAGACGCTCTCCACAGCCTGGAACAT
AATCTGGGTCTGTGGAAGCCCAATGCGGCCTTGACGGTCTTAGACTTCGC
GGTGCGCCACGGGGCGGTGGACGCGGACCACGAGAACTACATCGAGATCT
GTCACCTGCTCCGAGGGGCCTTCACAGACAAGAAACAGAGTGAGCCGCGG
AGAAAGAGCAAAGGAGGATTCTACTTTGGGACGGAGGCCTCGCCCCCAAC
ATCCATCCACATATGGGTGGGCACGCGATCTCCTTCCAAGGCCACCTACC
CGGGGCTGCTCGATGTATTGGCAGCCGGCGGACAACCGTCAGGCCTGACG
TTCCGTGAAAACGCTTTCAAGGAGGCGGAGGAGGAGGCCAGCATTCCCAG
GGGCCTGCTGGAGGGGCTTCGGCCCGGAGGAATGATTTCCTACAGGTACC
AAACCCGGCACGGCCTGTCAACTAAGCTGCTCAAGGTGTTCGACTTGGAG
CTTCCTCCCTCCTTCGTGCCCTACAATGGTGACGGAGAGGTGGAGAGCTT
CCAGTTGATGAGTCTCACAGACGCTCTCCACAGCCTGGAACATAATCTGG
GTCTGTGGAAGCCCAATGCGGCCTTGACGGTCTTAGACTTCGCGGTGCGC
CACGGGGCGGTGGACGCGGACCACGAGAACTACATCGAGATCTGTCACCT
GCTCCGAGGGGCCTTCACAGACAAGAAACAGAGTGAGCCGCGGAGAAAGA
GCAAAGGAGGATTCTACTTTGGGACGGAG
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Synonyms
Publications