jgi.p|Nanoce1779_2|582932, mRNA_3658 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|582932
Unique Name	mRNA_3658
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1652
Alignment location	scaffold_6:891890..893541 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583018
Track	FilteredModels2
ProteinId	582932

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_6	supercontig	scaffold_6:891890..893541 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582932	gene_3658	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|582932	mRNA_3658-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3658	CDS_3658	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_6:891890..893541+
coding sequence from alignment at scaffold_6:891890..893541+

mRNA sequence

>mRNA_3658 ID=mRNA_3658|Name=jgi.p|Nanoce1779_2|582932|organism=Nannochloropsis oceanica|type=mRNA|length=1652bp
ACAGTCAGTCGACCGTCTCAAAGCGCTGCGCCTGGTCGACCATCGCCCTT
AATATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGC
CTCAGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAG
ATCCTCTGACGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAA
CGGGAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCA
CGGTGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGT
CCTCCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCG
CAATATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTAACTACCATTGG
ACCGCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACA
ACACCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCA
CCCCCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGG
TGTCACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTT
CAAAGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACT
TTGCAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAG
CAGCAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCA
TGATGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGG
GCCAGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATT
GTTGGATTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAG
ACTTGCCTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTG
CTCGACAGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATT
GTGGTAAGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTA
CCAAGGGGAGGGCAAGAAATGGATTTGTCTTAAGAAACTGGAGGGGGAAT
TGAGCATAGAGTTACATATACACATAGACACATACACATCATAGACATAC
ACAAACGTTCAAGTAAGGTCAAATATGGAGGTAGAACTGAAGGGGGGAAA
GGGACATGTAAGCTGTTGTGGTTTTGCGGTTTACTGCGGATAGTAGCAGG
AAAGTCAGAATGAGCGATGGGCATTGGTGTCCAACGGGTGACAGTGTGAA
GGAAAATACCTCATGATATGCAGCAGCAGCGTGTTTACAGCTGCGTATCA
TATGATTGACAGCCTAGAGTAAGACGAAAAGGAAGAAGAAGAAAAAAGAA
GGGCAGAGAGGGAGCAGCCAACAAGAGAACTTGGTGACACCTAACAACAG
CTCGTCGACAGATCGACAACGCACTGGATAAAGAGACTAAACGAATGGCA
GATACGACAGGAAAGACACATGCAGGACGACAATGACAAGTAAAACAGCA
ACAGCAGTAACAGCAGAAGTAGCGAAAGAAGAAGAAAAAACTTCTGTACG
AA

protein sequence of jgi.p|Nanoce1779_2|582932

>mRNA_3658-protein ID=mRNA_3658-protein|Name=jgi.p|Nanoce1779_2|582932|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MWPSSWWSRRDENNAASAASSSGAAAAGAMTADPLTSRSVGFGVNVGSKR
EALGVLQPSSLPSIPHGAAISEEGGGGDSMLPSSRPWKMARVQLSQPPSQ
YIGQVQEPLICVTTIGPPVVGMEEEAMEKNYHNTTRQQPQQPQGPAQHSP
PTLAGQSRRQTAAYGGVTNALLQLRSPSTAAASKAGTMRQQQQQLQQKTL
QKDCDICLLSSSSSQSSNGSQSSRDGSNQQHGMMRTSRHPQEIAAMALWA
RGPQRAMTMSQSPPHAQQQQQQQQQQGSGHSDCWISIGRCRHCERGVCKT
CLRDCEACRETFCSLCSTVDYGGAFEKVVCIDCGKRLAITAAAAAAAAVP
RGGQEMDLS*

mRNA from alignment at scaffold_6:891890..893541+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3658 ID=mRNA_3658|Name=jgi.p|Nanoce1779_2|582932|organism=Nannochloropsis oceanica|type=mRNA|length=1652bp|location=Sequence derived from alignment at scaffold_6:891890..893541+ (Nannochloropsis oceanica)
ACAGTCAGTCGACCGTCTCAAAGCGCTGCGCCTGGTCGACCATCGCCCTT
AATATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGC
CTCAGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAG
ATCCTCTGACGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAA
CGGGAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCA
CGGTGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGT
CCTCCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCG
CAATATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTAACTACCATTGG
ACCGCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACA
ACACCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCA
CCCCCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGG
TGTCACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTT
CAAAGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACT
TTGCAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAG
CAGCAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCA
TGATGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGG
GCCAGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGC
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATT
GTTGGATTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAG
ACTTGCCTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTG
CTCGACAGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATT
GTGGTAAGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTA
CCAAGGGGAGGGCAAGAAATGGATTTGTCTTAAGAAACTGGAGGGGGAAT
TGAGCATAGAGTTACATATACACATAGACACATACACATCATAGACATAC
ACAAACGTTCAAGTAAGGTCAAATATGGAGGTAGAACTGAAGGGGGGAAA
GGGACATGTAAGCTGTTGTGGTTTTGCGGTTTACTGCGGATAGTAGCAGG
AAAGTCAGAATGAGCGATGGGCATTGGTGTCCAACGGGTGACAGTGTGAA
GGAAAATACCTCATGATATGCAGCAGCAGCGTGTTTACAGCTGCGTATCA
TATGATTGACAGCCTAGAGTAAGACGAAAAGGAAGAAGAAGAAAAAAGAA
GGGCAGAGAGGGAGCAGCCAACAAGAGAACTTGGTGACACCTAACAACAG
CTCGTCGACAGATCGACAACGCACTGGATAAAGAGACTAAACGAATGGCA
GATACGACAGGAAAGACACATGCAGGACGACAATGACAAGTAAAACAGCA
ACAGCAGTAACAGCAGAAGTAGCGAAAGAAGAAGAAAAAACTTCTGTACG
AA

Coding sequence (CDS) from alignment at scaffold_6:891890..893541+

>mRNA_3658 ID=mRNA_3658|Name=jgi.p|Nanoce1779_2|582932|organism=Nannochloropsis oceanica|type=CDS|length=1080bp|location=Sequence derived from alignment at scaffold_6:891890..893541+ (Nannochloropsis oceanica)
ATGTGGCCTTCCTCGTGGTGGTCTCGACGCGATGAGAACAACGCAGCCTC
AGCTGCTTCTTCGTCGGGCGCAGCAGCAGCAGGAGCCATGACTGCAGATC
CTCTGACGTCTCGCTCCGTAGGCTTTGGCGTCAATGTGGGGAGCAAACGG
GAGGCTCTGGGGGTCTTGCAGCCCTCTTCGTTGCCGTCGATTCCTCACGG
TGCTGCGATTAGTGAGGAAGGAGGTGGGGGAGACAGTATGCTCCCGTCCT
CCCGCCCGTGGAAGATGGCCCGTGTGCAGCTTAGCCAACCGCCTTCGCAA
TATATAGGGCAGGTGCAAGAGCCGTTGATATGTGTAACTACCATTGGACC
GCCGGTGGTGGGGATGGAGGAGGAAGCGATGGAAAAAAACTACCACAACA
CCACCAGGCAGCAGCCGCAGCAGCCGCAGGGCCCCGCGCAGCATTCACCC
CCTACACTCGCAGGTCAATCACGGCGACAGACGGCAGCGTACGGTGGTGT
CACTAATGCCCTTCTTCAGTTGCGCTCGCCATCCACGGCCGCGGCTTCAA
AGGCAGGGACGATGCGCCAACAGCAGCAGCAGCTGCAGCAGAAGACTTTG
CAGAAAGACTGCGATATTTGCTTGCTCTCATCCTCCTCGAGCCAGAGCAG
CAACGGCAGTCAAAGCAGCAGGGACGGTAGCAATCAGCAGCATGGCATGA
TGAGGACGAGCCGCCACCCTCAAGAAATAGCGGCGATGGCTCTCTGGGCC
AGAGGACCACAACGGGCAATGACGATGTCACAATCACCACCACACGCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGGGCAGCGGGCATTCAGATTGTT
GGATTTCGATTGGGCGCTGTCGGCATTGTGAGAGAGGGGTCTGTAAGACT
TGCCTAAGGGACTGTGAGGCGTGTCGTGAGACGTTTTGCTCGTTGTGCTC
GACAGTGGATTATGGTGGGGCCTTTGAAAAGGTGGTGTGTATCGATTGTG
GTAAGAGGCTGGCGATCACAGCAGCAGCAGCCGCCGCAGCAGCAGTACCA
AGGGGAGGGCAAGAAATGGATTTGTCTTAA

Synonyms

Publications