jgi.p|Nanoce1779_2|634175, mRNA_10296 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|634175
Unique Name	mRNA_10296
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1940
Alignment location	scaffold_60:10729..12668 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634261
Track	FilteredModels2
ProteinId	634175

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_60	supercontig	scaffold_60:10729..12668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634175	gene_10296	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|634175	mRNA_10296-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10296	CDS_10296	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_60:10729..12668+
coding sequence from alignment at scaffold_60:10729..12668+

mRNA sequence

>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Nanoce1779_2|634175|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp
GGCAAATGTGGTCCCCTACTTTGGAGAGCAAACGGTTAATTTTTGATATA
TTATTTGATTATGGGCATCATCTCTATCTCTCATTTCCCATCCTCCACTT
GCCACGCCACCTAATTACACCACCCTGCAACGCACACACACACACAGCCC
TTTACGTCTTGGGTGTCTTGCCGAGTTGTTGCTGCTGCGTACTCTTTCTC
GTCCCACACAGGATCACAACCCCTTCCATCTCTCCGCACCCCGGCGTGTC
ACCATATCACCACCCAAAGCAGAAATCATACCATGTCCACTTCTCACATC
TTCACCAGCGAGGACGAGAACGTCCAACGAACTCAGTCCCTGGAAGCTCT
GCGACAATGCACCCAGGAAGTCGCCCACTACAGCGACCCGCAGACCGAGC
AGGAATATGTCAAGCTGATCCAGACATTGCACAAGAAAGCCACTGCGTTG
GGCGCTCTGCATCAGCACAGCCAGCGAGTGGCGTGCGTGGAGAAGATAAT
CAAACTTGCCAAGAAAGGTCTGCCTGTCAATAATCTCTCTCTCCCTAAGG
CGCTGGAGACGCTGGCCGAGTGTCACGCTATGATGGGGGATAAACCTACG
GCCCTGACCTTGTTCAAAGAAGCGCTCGATACCCGCGCGGCTTGTGGTCT
ACCCGAGGCCCACCCGTCTTCGACAGATTCAATAAAGCGCATGGCAGACT
TGTACAGAGATCAAGCAGATTTTGAGCAGGCCTTGGAATTGCACCTCAAA
GTCCTTGAGCTGCGGCGGTCGTTGCTATCGCCAGGCGAGGCCCGAAGGGG
AGAAGGAGATGCGGTGATGGCAGAGGCTTTGCATGACGTCGGAACCACAT
ATCATTGCCTGGGCCATTTTGAACGGGCTATTCCTTATGCTAAAAAGGCA
TTGGAAATCAAGCGGGAGTTGGTGGCGAGAAACAAGGCACGGAGGGAGGA
AGGGGAGAAAAGGAGGGTGGAGGGGCATGAGGAGGAGGAGGAGGAAGGGG
AGGAGGCGGAGGAAGAGGATGCCTCTGATGAGTACGAGAAATTGATGGAA
ATGATGTACACACTTGCTTCTACCTACGCCAAGAACGCCGAATTCACGCT
TGCCCAGCCCATTTACACGGAGCTGATTGCCCGCCGTCGAGATGAAGATC
CCCCAAACTACATCAAACTGGCCAAGGCCCTGAACAATGCCGGGGCCATG
CACATGGAGGCGGGTGACGGCGCCCTTGCTCTTCCCTTTTATGAAGAAAG
TCTAGATATATTAAGAATGGTGCTGCCGGCGGCCCACCCGGAGATCGCGC
TTGCCATGGGAAATCTTGCGGAAGTGTACAGGACTGCGGGAGAGAATGAG
AAGGCCTTGGTCTTGTTTGAAACCTCTCTGACCATGCAGAGGCGGAGAGC
AGCAGAGGCGATGGCAGGGGTAGGAGGAGGGTGGGGGGGCGTGGATCCGA
TGGGCATGGCGTGCACGTTGAACAATTCGGCGCTGCTGTATCGGGCCGTG
GAGAATTACCCACAGGTGGAGAAGCAGATGGAGGAGGCGATTGATTGGCT
AAAGCGTGCGGTACCAGCGGAACATTACTACGTGACTAACATGAAATTGA
GCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAGAAGAAGGCGGGGACTTAC
GATCCCACTAAATATGGTATGGTAGGACTGTTCGAGAAGGCACGAAGGGA
TGAGAACCTTCCCTAAAGGACGGGAAGTAAGTGGATGTCTCAGAGGGAAG
AGAAAAGTAAGTCGACTGCAATAAGGAGCGAGCGACACGTAGGCGGTCGG
TAAGGTTCTTTCTAAAAGTAATGATAAGCAAGTTTGGTCCTTGAGAGGTT
ATGGTGACTTATTAGGATGCTGCGCTTTTTTTGGCATGTGATTCTTTTCA
CTTTTCGATTTACCTGAATTGATTTTAAAGCAAAAGTGGC

protein sequence of jgi.p|Nanoce1779_2|634175

>mRNA_10296-protein ID=mRNA_10296-protein|Name=jgi.p|Nanoce1779_2|634175|organism=Nannochloropsis oceanica|type=polypeptide|length=478bp
MSTSHIFTSEDENVQRTQSLEALRQCTQEVAHYSDPQTEQEYVKLIQTLH
KKATALGALHQHSQRVACVEKIIKLAKKGLPVNNLSLPKALETLAECHAM
MGDKPTALTLFKEALDTRAACGLPEAHPSSTDSIKRMADLYRDQADFEQA
LELHLKVLELRRSLLSPGEARRGEGDAVMAEALHDVGTTYHCLGHFERAI
PYAKKALEIKRELVARNKARREEGEKRRVEGHEEEEEEGEEAEEEDASDE
YEKLMEMMYTLASTYAKNAEFTLAQPIYTELIARRRDEDPPNYIKLAKAL
NNAGAMHMEAGDGALALPFYEESLDILRMVLPAAHPEIALAMGNLAEVYR
TAGENEKALVLFETSLTMQRRRAAEAMAGVGGGWGGVDPMGMACTLNNSA
LLYRAVENYPQVEKQMEEAIDWLKRAVPAEHYYVTNMKLSLAAAQKEGEE
KKAGTYDPTKYGMVGLFEKARRDENLP*

mRNA from alignment at scaffold_60:10729..12668+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Nanoce1779_2|634175|organism=Nannochloropsis oceanica|type=mRNA|length=1940bp|location=Sequence derived from alignment at scaffold_60:10729..12668+ (Nannochloropsis oceanica)
GGCAAATGTGGTCCCCTACTTTGGAGAGCAAACGGTTAATTTTTGATATA
TTATTTGATTATGGGCATCATCTCTATCTCTCATTTCCCATCCTCCACTT
GCCACGCCACCTAATTACACCACCCTGCAACGCACACACACACACAGCCC
TTTACGTCTTGGGTGTCTTGCCGAGTTGTTGCTGCTGCGTACTCTTTCTC
GTCCCACACAGGATCACAACCCCTTCCATCTCTCCGCACCCCGGCGTGTC
ACCATATCACCACCCAAAGCAGAAATCATACCATGTCCACTTCTCACATC
TTCACCAGCGAGGACGAGAACGTCCAACGAACTCAGTCCCTGGAAGCTCT
GCGACAATGCACCCAGGAAGTCGCCCACTACAGCGACCCGCAGACCGAGC
AGGAATATGTCAAGCTGATCCAGACATTGCACAAGAAAGCCACTGCGTTG
GGCGCTCTGCATCAGCACAGCCAGCGAGTGGCGTGCGTGGAGAAGATAAT
CAAACTTGCCAAGAAAGGTCTGCCTGTCAATAATCTCTCTCTCCCTAAGG
CGCTGGAGACGCTGGCCGAGTGTCACGCTATGATGGGGGATAAACCTACG
GCCCTGACCTTGTTCAAAGAAGCGCTCGATACCCGCGCGGCTTGTGGTCT
ACCCGAGGCCCACCCGTCTTCGACAGATTCAATAAAGCGCATGGCAGACT
TGTACAGAGATCAAGCAGATTTTGAGCAGGCCTTGGAATTGCACCTCAAA
GTCCTTGAGCTGCGGCGGTCGTTGCTATCGCCAGGCGAGGCCCGAAGGGG
AGAAGGAGATGCGGTGATGGCAGAGGCTTTGCATGACGTCGGAACCACAT
ATCATTGCCTGGGCCATTTTGAACGGGCTATTCCTTATGCTAAAAAGGCA
TTGGAAATCAAGCGGGAGTTGGTGGCGAGAAACAAGGCACGGAGGGAGGA
AGGGGAGAAAAGGAGGGTGGAGGGGCATGAGGAGGAGGAGGAGGAAGGGG
AGGAGGCGGAGGAAGAGGATGCCTCTGATGAGTACGAGAAATTGATGGAA
ATGATGTACACACTTGCTTCTACCTACGCCAAGAACGCCGAATTCACGCT
TGCCCAGCCCATTTACACGGAGCTGATTGCCCGCCGTCGAGATGAAGATC
CCCCAAACTACATCAAACTGGCCAAGGCCCTGAACAATGCCGGGGCCATG
CACATGGAGGCGGGTGACGGCGCCCTTGCTCTTCCCTTTTATGAAGAAAG
TCTAGATATATTAAGAATGGTGCTGCCGGCGGCCCACCCGGAGATCGCGC
TTGCCATGGGAAATCTTGCGGAAGTGTACAGGACTGCGGGAGAGAATGAG
AAGGCCTTGGTCTTGTTTGAAACCTCTCTGACCATGCAGAGGCGGAGAGC
AGCAGAGGCGATGGCAGGGGTAGGAGGAGGGTGGGGGGGCGTGGATCCGA
TGGGCATGGCGTGCACGTTGAACAATTCGGCGCTGCTGTATCGGGCCGTG
GAGAATTACCCACAGGTGGAGAAGCAGATGGAGGAGGCGATTGATTGGCT
AAAGCGTGCGGTACCAGCGGAACATTACTACGTGACTAACATGAAATTGA
GCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAGAAGAAGGCGGGGACTTAC
GATCCCACTAAATATGGTATGGTAGGACTGTTCGAGAAGGCACGAAGGGA
TGAGAACCTTCCCTAAAGGACGGGAAGTAAGTGGATGTCTCAGAGGGAAG
AGAAAAGTAAGTCGACTGCAATAAGGAGCGAGCGACACGTAGGCGGTCGG
TAAGGTTCTTTCTAAAAGTAATGATAAGCAAGTTTGGTCCTTGAGAGGTT
ATGGTGACTTATTAGGATGCTGCGCTTTTTTTGGCATGTGATTCTTTTCA
CTTTTCGATTTACCTGAATTGATTTTAAAGCAAAAGTGGC

Coding sequence (CDS) from alignment at scaffold_60:10729..12668+

>mRNA_10296 ID=mRNA_10296|Name=jgi.p|Nanoce1779_2|634175|organism=Nannochloropsis oceanica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_60:10729..12668+ (Nannochloropsis oceanica)
ATGTCCACTTCTCACATCTTCACCAGCGAGGACGAGAACGTCCAACGAAC
TCAGTCCCTGGAAGCTCTGCGACAATGCACCCAGGAAGTCGCCCACTACA
GCGACCCGCAGACCGAGCAGGAATATGTCAAGCTGATCCAGACATTGCAC
AAGAAAGCCACTGCGTTGGGCGCTCTGCATCAGCACAGCCAGCGAGTGGC
GTGCGTGGAGAAGATAATCAAACTTGCCAAGAAAGGTCTGCCTGTCAATA
ATCTCTCTCTCCCTAAGGCGCTGGAGACGCTGGCCGAGTGTCACGCTATG
ATGGGGGATAAACCTACGGCCCTGACCTTGTTCAAAGAAGCGCTCGATAC
CCGCGCGGCTTGTGGTCTACCCGAGGCCCACCCGTCTTCGACAGATTCAA
TAAAGCGCATGGCAGACTTGTACAGAGATCAAGCAGATTTTGAGCAGGCC
TTGGAATTGCACCTCAAAGTCCTTGAGCTGCGGCGGTCGTTGCTATCGCC
AGGCGAGGCCCGAAGGGGAGAAGGAGATGCGGTGATGGCAGAGGCTTTGC
ATGACGTCGGAACCACATATCATTGCCTGGGCCATTTTGAACGGGCTATT
CCTTATGCTAAAAAGGCATTGGAAATCAAGCGGGAGTTGGTGGCGAGAAA
CAAGGCACGGAGGGAGGAAGGGGAGAAAAGGAGGGTGGAGGGGCATGAGG
AGGAGGAGGAGGAAGGGGAGGAGGCGGAGGAAGAGGATGCCTCTGATGAG
TACGAGAAATTGATGGAAATGATGTACACACTTGCTTCTACCTACGCCAA
GAACGCCGAATTCACGCTTGCCCAGCCCATTTACACGGAGCTGATTGCCC
GCCGTCGAGATGAAGATCCCCCAAACTACATCAAACTGGCCAAGGCCCTG
AACAATGCCGGGGCCATGCACATGGAGGCGGGTGACGGCGCCCTTGCTCT
TCCCTTTTATGAAGAAAGTCTAGATATATTAAGAATGGTGCTGCCGGCGG
CCCACCCGGAGATCGCGCTTGCCATGGGAAATCTTGCGGAAGTGTACAGG
ACTGCGGGAGAGAATGAGAAGGCCTTGGTCTTGTTTGAAACCTCTCTGAC
CATGCAGAGGCGGAGAGCAGCAGAGGCGATGGCAGGGGTAGGAGGAGGGT
GGGGGGGCGTGGATCCGATGGGCATGGCGTGCACGTTGAACAATTCGGCG
CTGCTGTATCGGGCCGTGGAGAATTACCCACAGGTGGAGAAGCAGATGGA
GGAGGCGATTGATTGGCTAAAGCGTGCGGTACCAGCGGAACATTACTACG
TGACTAACATGAAATTGAGCTTGGCGGCCGCGCAGAAGGAAGGGGAAGAG
AAGAAGGCGGGGACTTACGATCCCACTAAATATGGTATGGTAGGACTGTT
CGAGAAGGCACGAAGGGATGAGAACCTTCCCTAA

Synonyms

Publications