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Properties
| Property Name | Value |
|---|
| TranscriptId | 400170 |
| Track | FilteredModels2 |
| ProteinId | 400084 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:886615..889032 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3193 ID=mRNA_3193|Name=jgi.p|Nanoce1779_2|400084|organism=Nannochloropsis oceanica|type=mRNA|length=2264bp
GTTACTTTTTACTTTTTTGGTCTTACTTTTACCTACGTGGTATACCCATG
GTCGATCATGCCGTTCGCTCAACAATTATGTTTCGACAGCATGTCTGCCA
TGTTGCGGATGGTCCAAACCCAACGCGGAGGACAGTGACCGACATCTCCT
TCTTCTCCTTCCTCGATCGACTGCCTCTCCCATGCTGGTGGATGGATGCT
TGCTTGCTCGTGCTTTCCTGCGTCTCACTCTCACGCACCATTACCCTACC
CACGCACCGACATCACACGCATAGGACAAGGTCACCAATCAAACTGTGGT
TGTGGTCGTGGTTGGAGAGCACAGCCCGGAAAATGCGGACAAAACGACGA
TTGTAGAAGCAGCGCTTAAAGCAAGCGCCAACATATGATGGACGGGCACG
ACGATGACTTTAGTATGGCCCCTGCCCTTGGGGAGGCCGCCTCATGGCCA
CTACCACCAGCAGCAGCTGCGATTACGGCGAATGATGAGGCGGATGCCGT
GGATTTAGAAGTGGTAGAGACCCCTGCCGCAGCGTCGATCGTCGCCTCTA
CTACTGCCCCAGCCGAGGAGGACAGCACCACCGCTCCATCCACCCCTATG
CCCATGACCCAGCGAGCCTTGATAGACCACATCGCGCAAATACAAGTCGC
TGCTATCCAGGCACAGACGAATCAGCTCCGCGAGTTGGTTCAGGGCATGG
CGACAGCTCCTTGGGCTACTTTTAATTGTGGCAGTGGCGGGGGGGGGGGC
ACGAGCGCTGCTGACCCACCTTCTGCCGAGTTTCTGTACCGGCGCCGGCC
CAAGGCACGTGTACAACAGGCGCCCATTATCGATGAGTTGGAGGCGCAGT
TGTTGCAGTGCCTGGACACCCGTGGAAGGGTGAGTCGAGAGAAAGATGCT
GACACGCTTTTGGACCTCATGTTGCAAGCCACACGGGACGAGAGCAAGGT
TTTGTTGGTGGAAGTGCTTCGGAGCGCCGCAGACCCCGGGGTGCTCGCTC
GATTAATACACAACGGTGGGTTGCGAGTATTAAAGCATTGGGTGTTGTCT
TATAATAAAGACGTGGCAGATCACGAGATACTCCGGTTGCTGCTCGAGAC
CCTGAGAGACTTGCCAGTCACCTACGACAGCTTGAAGGCCAGTGGTCTCG
CGAAAGTGATCAATAAAATTAGGAAAGAAAAAATTAAAGGAGGCAGCAGC
AAGGGAGCAGGGGGTAAGTTCGAGAAGGAACTGGAGGCGTTGGGCAAGCT
TTCCGAGTCCGTAAAGACGAGGTGGAAGCTGAGGTTGGAAAAGATGGTTG
AGGAGTCTAATGCGCCCTTGCCGCCCCCATCACTTCCGATCCCATCGTCA
TTATATGCTGGCGTTAAAAATGCCAAAGGCGTCAACAGAGGAGAAGGTAA
AGAAGTAGAAATAGGAGAAAGAAAAGGAGAAGCAGTAGATTCAGCAGAAG
CAGTATCTGCTACAGTAATAACAGCAAATGCAGTATCAACAGGAGCGGCA
CTAAGCGTCAAGCCAGTCAAGACGACGATAGATGCTCACGTTAGCAACAA
GCGAAAGTCGCCCACTACTACTACTACCACTACTACTACTACTACTACTA
CTACTACTACTACGGCTGCTACTGCTGCTGCTGGAGCTTTAGCGGTGCCT
TTAGTGGTCGAGAAGAAGCGCTCCCCGGCAAGTCTAGAGCAGCAGCAGCA
CCAGAAAAAGGGCAGGACTACTCCCACTTTCACATTGCCAACAACGGTAG
AAGCGGCAGCAGCAAAAGGAACAGCATCAGCTGGAGGAAAAAAGAAGGAC
GAGGAGGAGAAGGGCAAGCGGCGGGTATCGTGGAGTGACCAAAAAGGCGC
CGAGTTGACCCAGATTCGATTGTATGAAGTAGAGGAGAAGGAAGAGGTGG
CAAGGGATTTAGGAGTGGTTGGAGGGGGAGGGGAGGAGGAGGGGGAAAAT
CGCCATGATCGTATTCGGGCCTTGGCTATGCTGGAGAGGCAGAAGGAAAT
GGACTCCTCCGCGGCTAGTCATCCGACGAGAGGACGACGACGACCGAGGT
GGAGAAGGGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCCGGAGAC
GGTGCGTTTGGAAGCGGAGCAAAAGGGTAGGCTGGAGATGCATTACATAC
GGGAGGGGGATATACCTCCAACACCGATGGAGGGAGGGTCAGTGAGGGAA
CCACAGGAAGACTTCGTGGTGATCACCACGAGCGCGTTTTTGTTCCCAGT
GATGGATGCAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|400084 >mRNA_3193-protein ID=mRNA_3193-protein|Name=jgi.p|Nanoce1779_2|400084|organism=Nannochloropsis oceanica|type=polypeptide|length=582bp
MMDGHDDDFSMAPALGEAASWPLPPAAAAITANDEADAVDLEVVETPAAA
SIVASTTAPAEEDSTTAPSTPMPMTQRALIDHIAQIQVAAIQAQTNQLRE
LVQGMATAPWATFNCGSGGGGGTSAADPPSAEFLYRRRPKARVQQAPIID
ELEAQLLQCLDTRGRVSREKDADTLLDLMLQATRDESKVLLVEVLRSAAD
PGVLARLIHNGGLRVLKHWVLSYNKDVADHEILRLLLETLRDLPVTYDSL
KASGLAKVINKIRKEKIKGGSSKGAGGKFEKELEALGKLSESVKTRWKLR
LEKMVEESNAPLPPPSLPIPSSLYAGVKNAKGVNRGEGKEVEIGERKGEA
VDSAEAVSATVITANAVSTGAALSVKPVKTTIDAHVSNKRKSPTTTTTTT
TTTTTTTTTTAATAAAGALAVPLVVEKKRSPASLEQQQHQKKGRTTPTFT
LPTTVEAAAAKGTASAGGKKKDEEEKGKRRVSWSDQKGAELTQIRLYEVE
EKEEVARDLGVVGGGGEEEGENRHDRIRALAMLERQKEMDSSAASHPTRG
RRRPRWRRERRGKGEVDNDPGDGAFGSGAKG* back to topmRNA from alignment at scaffold_7:886615..889032- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3193 ID=mRNA_3193|Name=jgi.p|Nanoce1779_2|400084|organism=Nannochloropsis oceanica|type=mRNA|length=2418bp|location=Sequence derived from alignment at scaffold_7:886615..889032- (Nannochloropsis oceanica)
GTTACTTTTTACTTTTTTGGTCTTACTTTTACCTACGTGGTATACCCATG
GTCGATCATGCCGTTCGCTCAACAATTATGTTTCGACAGCATGTCTGCCA
TGTTGCGGATGGTCCAAACCCAACGCGGAGGACAGTGACCGACATCTCCT
TCTTCTCCTTCCTCGATCGACTGCCTCTCCCATGCTGGTGGATGGATGCT
TGCTTGCTCGTGCTTTCCTGCGTCTCACTCTCACGCACCATTACCCTACC
CACGCACCGACATCACACGCATAGGACAAGGTCACCAATCAAACTGTGGT
TGTGGTCGTGGTTGGAGAGCACAGCCCGGAAAATGCGGACAAAACGACGA
TTGTAGAAGCAGCGCTTAAAGCAAGCGCCAACATATGATGGACGGGCACG
ACGATGACTTTAGTATGGCCCCTGCCCTTGGGGAGGCCGCCTCATGGCCA
CTACCACCAGCAGCAGCTGCGATTACGGCGAATGATGAGGCGGATGCCGT
GGATTTAGAAGTGGTAGAGACCCCTGCCGCAGCGTCGATCGTCGCCTCTA
CTACTGCCCCAGCCGAGGAGGACAGCACCACCGCTCCATCCACCCCTATG
CCCATGACCCAGCGAGCCTTGATAGACCACATCGCGCAAATACAAGTCGC
TGCTATCCAGGCACAGACGAATCAGCTCCGCGAGTTGGTTCAGGGCATGG
CGACAGCTCCTTGGGCTACTTTTAATTGTGGCAGTGGCGGGGGGGGGGGC
ACGAGCGCTGCTGACCCACCTTCTGCCGAGTTTCTGTACCGGCGCCGGCC
CAAGGCACGTGTACAACAGGCGCCCATTATCGATGAGTTGGAGGCGCAGT
TGTTGCAGTGCCTGGACACCCGTGGAAGGGTGAGTCGAGAGAAAGATGCT
GACACGCTTTTGGACCTCATGTTGCAAGCCACACGGGACGAGAGCAAGGT
TTTGTTGGTGGAAGTGCTTCGGAGCGCCGCAGACCCCGGGGTGCTCGCTC
GATTAATACACAACGGTGGGTTGCGAGTATTAAAGCATTGGGTGTTGTCT
TATAATAAAGACGTGGCAGATCACGAGATACTCCGGTTGCTGCTCGAGAC
CCTGAGAGACTTGCCAGTCACCTACGACAGCTTGAAGGCCAGTGGTCTCG
CGAAAGTGATCAATAAAATTAGGAAAGAAAAAATTAAAGGAGGCAGCAGC
AAGGGAGCAGGGGGTAAGTTCGAGAAGGAACTGGAGGCGTTGGGCAAGCT
TTCCGAGTCCGTAAAGACGAGGTGGAAGCTGAGGTTGGAAAAGATGGTTG
AGGAGTCTAATGCGCCCTTGCCGCCCCCATCACTTCCGATCCCATCGTCA
TTATATGCTGGCGTTAAAAATGCCAAAGGCGTCAACAGAGGAGAAGGTAA
AGAAGTAGAAATAGGAGAAAGAAAAGGAGAAGCAGTAGATTCAGCAGAAG
CAGTATCTGCTACAGTAATAACAGCAAATGCAGTATCAACAGGAGCGGCA
CTAAGCGTCAAGCCAGTCAAGACGACGATAGATGCTCACGTTAGCAACAA
GCGAAAGTCGCCCACTACTACTACTACCACTACTACTACTACTACTACTA
CTACTACTACTACGGCTGCTACTGCTGCTGCTGGAGCTTTAGCGGTGCCT
TTAGTGGTCGAGAAGAAGCGCTCCCCGGCAAGTCTAGAGCAGCAGCAGCA
CCAGAAAAAGGGCAGGACTACTCCCACTTTCACATTGCCAACAACGGTAG
AAGCGGCAGCAGCAAAAGGAACAGCATCAGCTGGAGGAAAAAAGAAGGAC
GAGGAGGAGAAGGGCAAGCGGCGGGTATCGTGGAGTGACCAAAAAGGCGC
CGAGTTGACCCAGATTCGATTGTATGAAGTAGAGGAGAAGGAAGAGGTGG
CAAGGGATTTAGGAGTGGTTGGAGGGGGAGGGGAGGAGGAGGGGGAAAAT
CGCCATGATCGTATTCGGGCCTTGGCTATGCTGGAGAGGCAGAAGGAAAT
GGAGCTCTTCAAGAAGGGAGGGGGGGGGGGGGGGGGCAAAGTGGGGAGCT
CGCTCCAGGGGGATGGGGGAAAAGGGGCTTGCTAGGAGGAAAGTCAGGAA
GGAGGGCAGAAGGGAAGGCGAGTCAAGCGGTGTTGGCACCGACGACGGCT
TGGCGAGCTCCTCCGCGGCTAGTCATCCGACGAGAGGACGACGACGACCG
AGGTGGAGAAGGGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCCGG
AGACGGTGCGTTTGGAAGCGGAGCAAAAGGGTAGGCTGGAGATGCATTAC
ATACGGGAGGGGGATATACCTCCAACACCGATGGAGGGAGGGTCAGTGAG
GGAACCACAGGAAGACTTCGTGGTGATCACCACGAGCGCGTTTTTGTTCC
CAGTGATGGATGCAGGAG back to topCoding sequence (CDS) from alignment at scaffold_7:886615..889032- >mRNA_3193 ID=mRNA_3193|Name=jgi.p|Nanoce1779_2|400084|organism=Nannochloropsis oceanica|type=CDS|length=3492bp|location=Sequence derived from alignment at scaffold_7:886615..889032- (Nannochloropsis oceanica)
CTCCTCCGCGGCTAGTCATCCGACGAGAGGACGACGACGACCGAGGTGGA
GAAGGGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCCGGAGACGGT
GCGTTTGGAAGCGGAGCAAAAGGGTAGATGATGGACGGGCACGACGATGA
CTTTAGTATGGCCCCTGCCCTTGGGGAGGCCGCCTCATGGCCACTACCAC
CAGCAGCAGCTGCGATTACGGCGAATGATGAGGCGGATGCCGTGGATTTA
GAAGTGGTAGAGACCCCTGCCGCAGCGTCGATCGTCGCCTCTACTACTGC
CCCAGCCGAGGAGGACAGCACCACCGCTCCATCCACCCCTATGCCCATGA
CCCAGCGAGCCTTGATAGACCACATCGCGCAAATACAAGTCGCTGCTATC
CAGGCACAGACGAATCAGCTCCGCGAGTTGGTTCAGGGCATGGCGACAGC
TCCTTGGGCTACTTTTAATTGTGGCAGTGGCGGGGGGGGGGGCACGAGCG
CTGCTGACCCACCTTCTGCCGAGTTTCTGTACCGGCGCCGGCCCAAGGCA
CGTGTACAACAGGCGCCCATTATCGATGAGTTGGAGGCGCAGTTGTTGCA
GTGCCTGGACACCCGTGGAAGGGTGAGTCGAGAGAAAGATGCTGACACGC
TTTTGGACCTCATGTTGCAAGCCACACGGGACGAGAGCAAGGTTTTGTTG
GTGGAAGTGCTTCGGAGCGCCGCAGACCCCGGGGTGCTCGCTCGATTAAT
ACACAACGGTGGGTTGCGAGTATTAAAGCATTGGGTGTTGTCTTATAATA
AAGACGTGGCAGATCACGAGATACTCCGGTTGCTGCTCGAGACCCTGAGA
GACTTGCCAGTCACCTACGACAGCTTGAAGGCCAGTGGTCTCGCGAAAGT
GATCAATAAAATTAGGAAAGAAAAAATTAAAGGAGGCAGCAGCAAGGGAG
CAGGGGGTAAGTTCGAGAAGGAACTGGAGGCGTTGGGCAAGCTTTCCGAG
TCCGTAAAGACGAGGTGGAAGCTGAGGTTGGAAAAGATGGTTGAGGAGTC
TAATGCGCCCTTGCCGCCCCCATCACTTCCGATCCCATCGTCATTATATG
CTGGCGTTAAAAATGCCAAAGGCGTCAACAGAGGAGAAGGTAAAGAAGTA
GAAATAGGAGAAAGAAAAGGAGAAGCAGTAGATTCAGCAGAAGCAGTATC
TGCTACAGTAATAACAGCAAATGCAGTATCAACAGGAGCGGCACTAAGCG
TCAAGCCAGTCAAGACGACGATAGATGCTCACGTTAGCAACAAGCGAAAG
TCGCCCACTACTACTACTACCACTACTACTACTACTACTACTACTACTAC
TACTACGGCTGCTACTGCTGCTGCTGGAGCTTTAGCGGTGCCTTTAGTGG
TCGAGAAGAAGCGCTCCCCGGCAAGTCTAGAGCAGCAGCAGCACCAGAAA
AAGGGCAGGACTACTCCCACTTTCACATTGCCAACAACGGTAGAAGCGGC
AGCAGCAAAAGGAACAGCATCAGCTGGAGGAAAAAAGAAGGACGAGGAGG
AGAAGGGCAAGCGGCGGGTATCGTGGAGTGACCAAAAAGGCGCCGAGTTG
ACCCAGATTCGATTGTATGAAGTAGAGGAGAAGGAAGAGGTGGCAAGGGA
TTTAGGAGTGGTTGGAGGGGGAGGGGAGGAGGAGGGGGAAAATCGCCATG
ATCGTATTCGGGCCTTGGCTATGCTGGAGAGGCAGAAGGAAATGGACTCC
TCCGCGGCTAGTCATCCGACGAGAGGACGACGACGACCGAGGTGGAGAAG
GGAGAGAAGGGGGAAAGGCGAAGTCGACAACGACCCCGGAGACGGTGCGT
TTGGAAGCGGAGCAAAAGGGTAGATGATGGACGGGCACGACGATGACTTT
AGTATGGCCCCTGCCCTTGGGGAGGCCGCCTCATGGCCACTACCACCAGC
AGCAGCTGCGATTACGGCGAATGATGAGGCGGATGCCGTGGATTTAGAAG
TGGTAGAGACCCCTGCCGCAGCGTCGATCGTCGCCTCTACTACTGCCCCA
GCCGAGGAGGACAGCACCACCGCTCCATCCACCCCTATGCCCATGACCCA
GCGAGCCTTGATAGACCACATCGCGCAAATACAAGTCGCTGCTATCCAGG
CACAGACGAATCAGCTCCGCGAGTTGGTTCAGGGCATGGCGACAGCTCCT
TGGGCTACTTTTAATTGTGGCAGTGGCGGGGGGGGGGGCACGAGCGCTGC
TGACCCACCTTCTGCCGAGTTTCTGTACCGGCGCCGGCCCAAGGCACGTG
TACAACAGGCGCCCATTATCGATGAGTTGGAGGCGCAGTTGTTGCAGTGC
CTGGACACCCGTGGAAGGGTGAGTCGAGAGAAAGATGCTGACACGCTTTT
GGACCTCATGTTGCAAGCCACACGGGACGAGAGCAAGGTTTTGTTGGTGG
AAGTGCTTCGGAGCGCCGCAGACCCCGGGGTGCTCGCTCGATTAATACAC
AACGGTGGGTTGCGAGTATTAAAGCATTGGGTGTTGTCTTATAATAAAGA
CGTGGCAGATCACGAGATACTCCGGTTGCTGCTCGAGACCCTGAGAGACT
TGCCAGTCACCTACGACAGCTTGAAGGCCAGTGGTCTCGCGAAAGTGATC
AATAAAATTAGGAAAGAAAAAATTAAAGGAGGCAGCAGCAAGGGAGCAGG
GGGTAAGTTCGAGAAGGAACTGGAGGCGTTGGGCAAGCTTTCCGAGTCCG
TAAAGACGAGGTGGAAGCTGAGGTTGGAAAAGATGGTTGAGGAGTCTAAT
GCGCCCTTGCCGCCCCCATCACTTCCGATCCCATCGTCATTATATGCTGG
CGTTAAAAATGCCAAAGGCGTCAACAGAGGAGAAGGTAAAGAAGTAGAAA
TAGGAGAAAGAAAAGGAGAAGCAGTAGATTCAGCAGAAGCAGTATCTGCT
ACAGTAATAACAGCAAATGCAGTATCAACAGGAGCGGCACTAAGCGTCAA
GCCAGTCAAGACGACGATAGATGCTCACGTTAGCAACAAGCGAAAGTCGC
CCACTACTACTACTACCACTACTACTACTACTACTACTACTACTACTACT
ACGGCTGCTACTGCTGCTGCTGGAGCTTTAGCGGTGCCTTTAGTGGTCGA
GAAGAAGCGCTCCCCGGCAAGTCTAGAGCAGCAGCAGCACCAGAAAAAGG
GCAGGACTACTCCCACTTTCACATTGCCAACAACGGTAGAAGCGGCAGCA
GCAAAAGGAACAGCATCAGCTGGAGGAAAAAAGAAGGACGAGGAGGAGAA
GGGCAAGCGGCGGGTATCGTGGAGTGACCAAAAAGGCGCCGAGTTGACCC
AGATTCGATTGTATGAAGTAGAGGAGAAGGAAGAGGTGGCAAGGGATTTA
GGAGTGGTTGGAGGGGGAGGGGAGGAGGAGGGGGAAAATCGCCATGATCG
TATTCGGGCCTTGGCTATGCTGGAGAGGCAGAAGGAAATGGA back to top
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