jgi.p|Nanoce1779_2|612857, mRNA_10936 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|612857
Unique Name	mRNA_10936
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	930
Alignment location	scaffold_68:57733..59564 +

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Properties


Property Name	Value
TranscriptId	612943
Track	FilteredModels2
ProteinId	612857

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_68	supercontig	scaffold_68:57733..59564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612857	gene_10936	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|612857	mRNA_10936-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10936	CDS_10936	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_68:57733..59564+
coding sequence from alignment at scaffold_68:57733..59564+

mRNA sequence

>mRNA_10936 ID=mRNA_10936|Name=jgi.p|Nanoce1779_2|612857|organism=Nannochloropsis oceanica|type=mRNA|length=930bp
AGGCAACGACAGGAATAAGTCCACGACCAGAAGCCACTGGGAGCCCTGAA
CGAGGTTAATTCTGGGTGCATTTGGCAGCATCACCGAATCAACCTCCTGC
CCCGCACAACAACAGCCTACGACATGTCTGCGGACACACCCACCACCTTC
ACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAACATAAA
GGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAAACACTTT
CGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCTTCACT
TGGGAAATCAAGAAGAAGATTCTGGGCATGCGCGGCGAAGAATGGGGCAA
GATCGTCGTGGACGACCTCGAGCTTCATGGACAATTGGAACCCTTGACCT
TGGTGAAGGAGTGGGAAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAG
CTCCTCCCGGGCGCGAAGGAAATCATCCAATTCTTTGCTTCCAAAGGCCT
ACCCCAGGGCATTGCCACGTCATCCTCCATGGACCTGGTGCGACATAAGC
GGCAACATCACGAGAAGCACCTGTTCGGGAGGATGCAGGCGGTGGTCACG
GGCGATGACCCAGAGATTAGACAAGGCAAGCCCGCCCCTGACATTTACTT
AGCGGCAGCCCAGCGGATGGGGGTAACGCCAGAGGAGTGTCTGGTATTTG
AAGACGCTCTGAATGGGGTGCTGTCTGGCAAAGCGGCGGGCATGCACGTC
GTGGCTATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACGAGCATGC
ACACGAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTGGGGGT
GGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTGTTCAA
TGAATTTTAAAAAAAAACAGTGTGAACAAA

protein sequence of jgi.p|Nanoce1779_2|612857

>mRNA_10936-protein ID=mRNA_10936-protein|Name=jgi.p|Nanoce1779_2|612857|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSADTPTTFTVASDYETSGLSKKNIKAIIYDLDGTLLDTETLSTEAIQAV
VGRWQKTFTWEIKKKILGMRGEEWGKIVVDDLELHGQLEPLTLVKEWEVE
LERMAPTVQLLPGAKEIIQFFASKGLPQGIATSSSMDLVRHKRQHHEKHL
FGRMQAVVTGDDPEIRQGKPAPDIYLAAAQRMGVTPEECLVFEDALNGVL
SGKAAGMHVVAIPDPRLELAPFHEHAHEVLGDLLAFEPRSWGWTEESIYA
TTEKQKVVQ*

mRNA from alignment at scaffold_68:57733..59564+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10936 ID=mRNA_10936|Name=jgi.p|Nanoce1779_2|612857|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp|location=Sequence derived from alignment at scaffold_68:57733..59564+ (Nannochloropsis oceanica)
AGGCAACGACAGGAATAAGTCCACGACCAGAAGCCACTGGGAGCCCTGAA
CGAGGTTAATTCTGGGTGCATTTGGCAGCATCACCGAATCAACCTCCTGC
CCCGCACAACAACAGCCTACGACATGTCTGCGGACACACCCACCACCTTC
ACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAACATAAA
GGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAAACACTTT
CGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCTTCACT
TGGTATGTGTATGTATCTCTGTGTCCGTGGGAGGGCGCGCGGTCAAGATG
AACCCAACCCTCCATTTTTAATATGCACACAGGGAAATCAAGAAGAAGAT
TCTGGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGGTACGT
TGAGCAGGAGCAGGCTCTCCTTTGCTGAATATTACAATCCTCCTCCTATC
TCGTATCCCGATCTCCACTCAGACTACCCTTCCTCGTGAAAACTTTTAGA
CCTCGAGCTTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGAGTGGG
AAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAGGTATGCGCGGCTGAA
ATCAACCCTTTCTTCCTTTATCTACACCTGTCGCACGTCCCTTCGTGGTG
ATCAATTCTACCGCAGGCCGTTATATGTCTTATGGTCTCTCTAGCGTGGC
ACTGTACTTTTAAACGCATTCTTTCTCCCCTCTTTACTCTATCCTCCTCG
CCTCCTTGCTATCCTCGCCACAGCTCCTCCCGGGCGCGAAGGAAATCATC
CAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCATCCTC
CATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCTGTTCG
GGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGGTTGGGGAGGAG
AAGAAGGGGGAGAGAGGGAGGGAGGGAGTGGAAGGATCAAGATCAGGATG
AGGCTAACAAAGACGCCTTAAACCCTTTTCTTATGCTTATTCAATCGTGC
CTTCAGCTGCACAATCCATATTGTCCCCCATTCTTTTTTTTGATTGATGA
ATGCCCTCAACTCGTTCCACTTCTCTCCTCTCGTCTCACTCCCAGATTAG
ACAAGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGATGG
GGGTAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGGTA
AGTCTCCGAGAGAAAGAGATAGAAGGATTTGTGAGGGTGAGAGGTGGGAC
GGTCGCTCACTATCAGTCTTAATGATTTAGTTTCCGGCTTATTTATTCTT
CTTTCCGCACCATATGCGTCCTTTTTTAATTTGGTTGTCAACGTGTAAAT
CGTGAGGTTCAAGAAGTCTACCAGTCCTTCATGCAGTCATTTATTTCTTG
GTCGCTTCCTCCACCGTGACAGGTGCTGTCTGGCAAAGCGGCGGGCATGC
ACGTCGTGGCTATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACGAG
CATGCACACGAGGTAAGGGTTAGCGGTAGAGATATATGACGCAAGGAAAC
CCCCCAAATAAAATGAGCAATCATGCAACTTTCCCGCTTCCTTCCTTCTT
TCAACACAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTGGGG
GTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTGTTC
AATGAATTTTAAAAAAAAACAGTGTGAACAAA

Coding sequence (CDS) from alignment at scaffold_68:57733..59564+

>mRNA_10936 ID=mRNA_10936|Name=jgi.p|Nanoce1779_2|612857|organism=Nannochloropsis oceanica|type=CDS|length=5460bp|location=Sequence derived from alignment at scaffold_68:57733..59564+ (Nannochloropsis oceanica)
ATGTCTGCGGACACACCCACCACCTTCACCGTCGCCAGCGACTATGAAAC
TAGCGGCCTGAGTAAGAAAAACATAAAGGCCATCATCTACGACCTGGACG
GGACCTTGCTGGACACGGAAACACTTTCGACCGAGGCGATCCAAGCGGTG
GTAGGGCGCTGGCAGAAGACCTTCACTTGGGAAATCAAGAAGAAGATTCT
GGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGACCTCGAGC
TTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGAGTGGGAAGTGGAG
CTAGAACGCATGGCGCCAACCGTCCAGCTCCTCCCGGGCGCGAAGGAAAT
CATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCAT
CCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCTG
TTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGATTAGACA
AGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGATGGGGG
TAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGGTGCTG
TCTGGCAAAGCGGCGGGCATGCACGTCGTGGCTATCCCTGACCCTCGCCT
GGAATTGGCACCTTTCCACGAGCATGCACACGAGGTCCTGGGCGACCTTC
TGGCTTTCGAACCTCGGAGTTGGGGGTGGACAGAAGAAAGCATTTATGCA
ACTACTGAAAAGCAAAAGGTTGTTCAATGAATGTCTGCGGACACACCCAC
CACCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAA
ACATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAA
ACACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGAC
CTTCACTTGGGAAATCAAGAAGAAGATTCTGGGCATGCGCGGCGAAGAAT
GGGGCAAGATCGTCGTGGACGACCTCGAGCTTCATGGACAATTGGAACCC
TTGACCTTGGTGAAGGAGTGGGAAGTGGAGCTAGAACGCATGGCGCCAAC
CGTCCAGCTCCTCCCGGGCGCGAAGGAAATCATCCAATTCTTTGCTTCCA
AAGGCCTACCCCAGGGCATTGCCACGTCATCCTCCATGGACCTGGTGCGA
CATAAGCGGCAACATCACGAGAAGCACCTGTTCGGGAGGATGCAGGCGGT
GGTCACGGGCGATGACCCAGAGATTAGACAAGGCAAGCCCGCCCCTGACA
TTTACTTAGCGGCAGCCCAGCGGATGGGGGTAACGCCAGAGGAGTGTCTG
GTATTTGAAGACGCTCTGAATGGGGTGCTGTCTGGCAAAGCGGCGGGCAT
GCACGTCGTGGCTATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACG
AGCATGCACACGAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGT
TGGGGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGT
TGTTCAATGAATGTCTGCGGACACACCCACCACCTTCACCGTCGCCAGCG
ACTATGAAACTAGCGGCCTGAGTAAGAAAAACATAAAGGCCATCATCTAC
GACCTGGACGGGACCTTGCTGGACACGGAAACACTTTCGACCGAGGCGAT
CCAAGCGGTGGTAGGGCGCTGGCAGAAGACCTTCACTTGGGAAATCAAGA
AGAAGATTCTGGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGAC
GACCTCGAGCTTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGAGTG
GGAAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAGCTCCTCCCGGGCG
CGAAGGAAATCATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATT
GCCACGTCATCCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGA
GAAGCACCTGTTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAG
AGATTAGACAAGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAG
CGGATGGGGGTAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAA
TGGGGTGCTGTCTGGCAAAGCGGCGGGCATGCACGTCGTGGCTATCCCTG
ACCCTCGCCTGGAATTGGCACCTTTCCACGAGCATGCACACGAGGTCCTG
GGCGACCTTCTGGCTTTCGAACCTCGGAGTTGGGGGTGGACAGAAGAAAG
CATTTATGCAACTACTGAAAAGCAAAAGGTTGTTCAATGAATGTCTGCGG
ACACACCCACCACCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTG
AGTAAGAAAAACATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCT
GGACACGGAAACACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCT
GGCAGAAGACCTTCACTTGGGAAATCAAGAAGAAGATTCTGGGCATGCGC
GGCGAAGAATGGGGCAAGATCGTCGTGGACGACCTCGAGCTTCATGGACA
ATTGGAACCCTTGACCTTGGTGAAGGAGTGGGAAGTGGAGCTAGAACGCA
TGGCGCCAACCGTCCAGCTCCTCCCGGGCGCGAAGGAAATCATCCAATTC
TTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCATCCTCCATGGA
CCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCTGTTCGGGAGGA
TGCAGGCGGTGGTCACGGGCGATGACCCAGAGATTAGACAAGGCAAGCCC
GCCCCTGACATTTACTTAGCGGCAGCCCAGCGGATGGGGGTAACGCCAGA
GGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGGTGCTGTCTGGCAAAG
CGGCGGGCATGCACGTCGTGGCTATCCCTGACCCTCGCCTGGAATTGGCA
CCTTTCCACGAGCATGCACACGAGGTCCTGGGCGACCTTCTGGCTTTCGA
ACCTCGGAGTTGGGGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAA
AGCAAAAGGTTGTTCAATGAATGTCTGCGGACACACCCACCACCTTCACC
GTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAAACATAAAGGC
CATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAAACACTTTCGA
CCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGACCTTCACTTGG
GAAATCAAGAAGAAGATTCTGGGCATGCGCGGCGAAGAATGGGGCAAGAT
CGTCGTGGACGACCTCGAGCTTCATGGACAATTGGAACCCTTGACCTTGG
TGAAGGAGTGGGAAGTGGAGCTAGAACGCATGGCGCCAACCGTCCAGCTC
CTCCCGGGCGCGAAGGAAATCATCCAATTCTTTGCTTCCAAAGGCCTACC
CCAGGGCATTGCCACGTCATCCTCCATGGACCTGGTGCGACATAAGCGGC
AACATCACGAGAAGCACCTGTTCGGGAGGATGCAGGCGGTGGTCACGGGC
GATGACCCAGAGATTAGACAAGGCAAGCCCGCCCCTGACATTTACTTAGC
GGCAGCCCAGCGGATGGGGGTAACGCCAGAGGAGTGTCTGGTATTTGAAG
ACGCTCTGAATGGGGTGCTGTCTGGCAAAGCGGCGGGCATGCACGTCGTG
GCTATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACGAGCATGCACA
CGAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGTTGGGGGTGGA
CAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGTTGTTCAATGA
ATGTCTGCGGACACACCCACCACCTTCACCGTCGCCAGCGACTATGAAAC
TAGCGGCCTGAGTAAGAAAAACATAAAGGCCATCATCTACGACCTGGACG
GGACCTTGCTGGACACGGAAACACTTTCGACCGAGGCGATCCAAGCGGTG
GTAGGGCGCTGGCAGAAGACCTTCACTTGGGAAATCAAGAAGAAGATTCT
GGGCATGCGCGGCGAAGAATGGGGCAAGATCGTCGTGGACGACCTCGAGC
TTCATGGACAATTGGAACCCTTGACCTTGGTGAAGGAGTGGGAAGTGGAG
CTAGAACGCATGGCGCCAACCGTCCAGCTCCTCCCGGGCGCGAAGGAAAT
CATCCAATTCTTTGCTTCCAAAGGCCTACCCCAGGGCATTGCCACGTCAT
CCTCCATGGACCTGGTGCGACATAAGCGGCAACATCACGAGAAGCACCTG
TTCGGGAGGATGCAGGCGGTGGTCACGGGCGATGACCCAGAGATTAGACA
AGGCAAGCCCGCCCCTGACATTTACTTAGCGGCAGCCCAGCGGATGGGGG
TAACGCCAGAGGAGTGTCTGGTATTTGAAGACGCTCTGAATGGGGTGCTG
TCTGGCAAAGCGGCGGGCATGCACGTCGTGGCTATCCCTGACCCTCGCCT
GGAATTGGCACCTTTCCACGAGCATGCACACGAGGTCCTGGGCGACCTTC
TGGCTTTCGAACCTCGGAGTTGGGGGTGGACAGAAGAAAGCATTTATGCA
ACTACTGAAAAGCAAAAGGTTGTTCAATGAATGTCTGCGGACACACCCAC
CACCTTCACCGTCGCCAGCGACTATGAAACTAGCGGCCTGAGTAAGAAAA
ACATAAAGGCCATCATCTACGACCTGGACGGGACCTTGCTGGACACGGAA
ACACTTTCGACCGAGGCGATCCAAGCGGTGGTAGGGCGCTGGCAGAAGAC
CTTCACTTGGGAAATCAAGAAGAAGATTCTGGGCATGCGCGGCGAAGAAT
GGGGCAAGATCGTCGTGGACGACCTCGAGCTTCATGGACAATTGGAACCC
TTGACCTTGGTGAAGGAGTGGGAAGTGGAGCTAGAACGCATGGCGCCAAC
CGTCCAGCTCCTCCCGGGCGCGAAGGAAATCATCCAATTCTTTGCTTCCA
AAGGCCTACCCCAGGGCATTGCCACGTCATCCTCCATGGACCTGGTGCGA
CATAAGCGGCAACATCACGAGAAGCACCTGTTCGGGAGGATGCAGGCGGT
GGTCACGGGCGATGACCCAGAGATTAGACAAGGCAAGCCCGCCCCTGACA
TTTACTTAGCGGCAGCCCAGCGGATGGGGGTAACGCCAGAGGAGTGTCTG
GTATTTGAAGACGCTCTGAATGGGGTGCTGTCTGGCAAAGCGGCGGGCAT
GCACGTCGTGGCTATCCCTGACCCTCGCCTGGAATTGGCACCTTTCCACG
AGCATGCACACGAGGTCCTGGGCGACCTTCTGGCTTTCGAACCTCGGAGT
TGGGGGTGGACAGAAGAAAGCATTTATGCAACTACTGAAAAGCAAAAGGT
TGTTCAATGA

Synonyms

Publications