jgi.p|Nanoce1779_2|613381, mRNA_10737 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613381
Unique Name	mRNA_10737
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1299
Alignment location	scaffold_73:35940..37647 +

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Properties


Property Name	Value
TranscriptId	613467
Track	FilteredModels2
ProteinId	613381

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_73	supercontig	scaffold_73:35940..37647 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613381	gene_10737	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613381	mRNA_10737-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10737	CDS_10737	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_73:35940..37647+
coding sequence from alignment at scaffold_73:35940..37647+

mRNA sequence

>mRNA_10737 ID=mRNA_10737|Name=jgi.p|Nanoce1779_2|613381|organism=Nannochloropsis oceanica|type=mRNA|length=1299bp
CTTTGTCACGCATCTTGTGGGTGTCCCTTCTTTCCTTCGCCCGACCATCT
TCGATCTGTATCTTTTGCCATTCATTGATAGTATGAAGGCGCTGGCAGCT
GCAGATGTAACCACTACTCTTGAATCATTCCCCTGTACAAGATTACCATT
CACTCTAAGCCCTTTCCCCTTCCTCTCTTTCTGCCCCTCATCCCTCTCTA
CCCTTCTCTTCCTCTGTTCTCTTCCCTTGCTGTGGTCTGAGGGTAGTCGG
ACTTGTGCTCCCATTCCTCATGTCTCTTTTTTTCTCCCTTCATTTGTGGC
TGAGTCTTATTATAGTTACATTTCTTTCACCTTATTCCTTCCCTTCCACA
TACGCCTTCCATCTCCTAACTTCTTCGTCTGTCTCCCCATTCTTCGTTTG
CCCTTCTCCTGTTTACATGCATGCTTCATTACAACGACTTTTTTTGGCTC
CTACTACCTTTATCGGACTCTTTCGCTCCTTTCGTACGACGGCCGTACCA
CTCCGGGAGTTAGCGACATCCGCTTCCCACACACCGCCCTACAAACACCC
ACGCAATCTCCTCCTTCGCTTCTTCTTCATTCTCTCTTAAACTTGTTTCT
ATACACGATATAATTAAATCCTAATGACCCACTCCTCCTTTCTTTCTTTC
TTTCTTCCCTCCCCTCTTCTCTACGCACCCTCGCTCACTTACAAGCCTCA
CGAGCAAGCGTCCTTATCTTCTCTTTTTCCTTCCCATGCACATGCATACA
TTATATATGCACACGCATACATTATAGATGTTAAAAAACACGACGGCCAC
AAAACAAATAACTACACCAATTCTTCTCTCTCTTCCTCCCCCCTATCCTC
TCATCCATCCGTTCCCCCTAACGGGAGGGGCTCTAGTATTCCAACGCCAC
GCTTTTCTTCACATCAATCTTACAGAACTTGCCTAAGCCCATGACCACCT
CCGGCAGCTCCTCGTCCGTGCGTCCCTCCACGGTGAAGGCGCATTCAAAT
GCCACGAGCTTGAGCTTGTCCTGGAGAATCTGGATGCCTATTGACAGGAA
ATAAGATGGAAGAAAACAGGGAAAAAAAACGCGTGAGTGTCTACCGCTCC
TGCAGAAAAAGAAGGGGGGCAGGGAGGAAAGGAAGAGAGGGAGGGAAAGA
GGGAGGGAGGGAGATACCTTTGCGGGCCAAATAGGCAAATTTGTGCATGT
TGATGTCAATCTCGACGTAATCCTTGCCCCTGTAGTACTTGGCCGTGTGC
TTCACCAGGATGGGCTTGCCGTTGCACTGCGCTATAAACGACGGCAATC

protein sequence of jgi.p|Nanoce1779_2|613381

>mRNA_10737-protein ID=mRNA_10737-protein|Name=jgi.p|Nanoce1779_2|613381|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MKALAAADVTTTLESFPCTRLPFTLSPFPFLSFCPSSLSTLLFLCSLPLL
WSEGSRTCAPIPHVSFFLPSFVAESYYSYISFTLFLPFHIRLPSPNFFVC
LPILRLPFSCLHACFITTTFFGSYYLYRTLSLLSYDGRTTPGVSDIRFPH
TALQTPTQSPPSLLLHSLLNLFLYTI*

mRNA from alignment at scaffold_73:35940..37647+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10737 ID=mRNA_10737|Name=jgi.p|Nanoce1779_2|613381|organism=Nannochloropsis oceanica|type=mRNA|length=1708bp|location=Sequence derived from alignment at scaffold_73:35940..37647+ (Nannochloropsis oceanica)
CTTTGTCACGCATCTTGTGGGTGTCCCTTCTTTCCTTCGCCCGACCATCT
TCGATCTGTATCTTTTGCCATTCATTGATAGTATGAAGGCGCTGGCAGCT
GCAGATGTAACCACTACTCTTGAATCATTCCCCTGTACAAGATTACCATT
CACTCTAAGCCCTTTCCCCTTCCTCTCTTTCTGCCCCTCATCCCTCTCTA
CCCTTCTCTTCCTCTGTTCTCTTCCCTTGCTGTGGTCTGAGGGTAGTCGG
ACTTGTGCTCCCATTCCTCATGTCTCTTTTTTTCTCCCTTCATTTGTGGC
TGAGTCTTATTATAGTTACATTTCTTTCACCTTATTCCTTCCCTTCCACA
TACGCCTTCCATCTCCTAACTTCTTCGTCTGTCTCCCCATTCTTCGTTTG
CCCTTCTCCTGTTTACATGCATGCTTCATTACAACGACTTTTTTTGGCTC
CTACTACCTTTATCGGACTCTTTCGCTCCTTTCGTACGACGGCCGTACCA
CTCCGGGAGTTAGCGACATCCGCTTCCCACACACCGCCCTACAAACACCC
ACGCAATCTCCTCCTTCGCTTCTTCTTCATTCTCTCTTAAACTTGTTTCT
ATACACGATATAATTAAATCCTAATGACCCACTCCTCCTTTCTTTCTTTC
TTTCTTCCCTCCCCTCTTCTCTACGCACCCTCGCTCACTTACAAGCCTCA
CGAGCAAGCGTCCTTATCTTCTCTTTTTCCTTCCCATGCACATGCATACA
TTATATATGCACACGCATACATTATAGATGTTAAAAAACACGACGGCCAC
AAAACAAATAACTACACCAATTCTTCTCTCTCTTCCTCCCCCCTATCCTC
TCATCCATCCGTTCCCCCTAACGGGAGGGGCTCTAGTATTCCAACGCCAC
GCTTTTCTTCACATCAATCTTACAGAACTTGCCTAAGCCCATGACCACCT
CCGGCAGCTCCTCGTCCGTGCGTCCCTCCACGGTGAAGGCGCATTCAAAT
GCCACGAGCCTATGCCATGGAGAGAGGAAGGAAGGAAGGGAGGGAGGGAG
GGAGGGAGGGTAAGAGATAGTGGTCAATGATCAGAGCACCTTGAGACGGG
CGAATGTCCCTCCCTCCTTCCCTTCTTCCCTCTCTCCTTCTATCCCGCTT
TCCGCCCCTCGCCCCGACTCTCCCTCTCAACTCGTACTTGAGCTTGTCCT
GGAGAATCTGGATGCCTATTGACAGGAAATAAGATGGAAGAAAACAGGGA
AAAAAAACGCGTGAGTGTCTACCGCTCCTGCAGAAAAAGAAGGGGGGCAG
GGAGGAAAGGAAGAGAGGGAGGGAAAGAGGGAGGGAGGGAGATACCTTTG
CGGGCCAAATAGGCAAATTTGTGCATGTTGATGTCAATCTCGACGTAATC
CTTGCCCCTGTAGTACTTGGCCGTGTGCTTCACCAGGATGGGCTTGCCGT
TGCACTGGAGGAGAGGAGGGAGGAGGGGGGAGATGAAGGGGGGGAAGGGT
AAATAGCATGAAAGATGCAAACGACTGTACAATACCCGTGCGCTCTTTGC
ACCCACTCTCTCCTTTCCTCCCTCCTTCTCTCTTTCCCAACCTCTCTTAT
TGCGCGAAAATCAAGGAAAATTTCAATTCCTTCCGAATCTCACACACTCC
AACACCTTTCCCTCCTTCTCTCCCTCCTTGTGTACCTGCGCTATAAACGA
CGGCAATC

Coding sequence (CDS) from alignment at scaffold_73:35940..37647+

>mRNA_10737 ID=mRNA_10737|Name=jgi.p|Nanoce1779_2|613381|organism=Nannochloropsis oceanica|type=CDS|length=531bp|location=Sequence derived from alignment at scaffold_73:35940..37647+ (Nannochloropsis oceanica)
ATGAAGGCGCTGGCAGCTGCAGATGTAACCACTACTCTTGAATCATTCCC
CTGTACAAGATTACCATTCACTCTAAGCCCTTTCCCCTTCCTCTCTTTCT
GCCCCTCATCCCTCTCTACCCTTCTCTTCCTCTGTTCTCTTCCCTTGCTG
TGGTCTGAGGGTAGTCGGACTTGTGCTCCCATTCCTCATGTCTCTTTTTT
TCTCCCTTCATTTGTGGCTGAGTCTTATTATAGTTACATTTCTTTCACCT
TATTCCTTCCCTTCCACATACGCCTTCCATCTCCTAACTTCTTCGTCTGT
CTCCCCATTCTTCGTTTGCCCTTCTCCTGTTTACATGCATGCTTCATTAC
AACGACTTTTTTTGGCTCCTACTACCTTTATCGGACTCTTTCGCTCCTTT
CGTACGACGGCCGTACCACTCCGGGAGTTAGCGACATCCGCTTCCCACAC
ACCGCCCTACAAACACCCACGCAATCTCCTCCTTCGCTTCTTCTTCATTC
TCTCTTAAACTTGTTTCTATACACGATATAA

Synonyms

Publications