jgi.p|Nanoce1779_2|427394, mRNA_4203 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|427394
Unique NamemRNA_4203
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1109
Alignment locationscaffold_8:1129728..1130836 +

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Properties
Property NameValue
TranscriptId427480
TrackFilteredModels2
ProteinId427394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:1129728..1130836 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|427394gene_4203Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|427394mRNA_4203-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4203CDS_4203Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4203 ID=mRNA_4203|Name=jgi.p|Nanoce1779_2|427394|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp
TCTATGAACAAATTACCTTTTTCAGCAATCCTCCGTCCCCGCTCACGTCG
ATCCACTCCCCATTCGTTTTGTCAGCAGCCATATTCGGTAGGTATGCGTC
TACGTGGGTAGACAAGCCTGAAGAGAGAAAGGGAAAAGGAAAAGAGGGTG
TGGTGGGCATGGAAATTTCCATAGTCGAGAGGGAGGGGAGGTCGATAAGG
AAATCGCACGCTCTATTCAAATGGTAGGCGTGGAACCATCCCGCATCCCT
ACAACCACTGTCAGGAAGCTAAGCATCCTGTACAATTGTGGATGCCATGG
CGTGGCTTGGTTTTTTGGAGGCGATGGAAATAGAAAATGTAGTGGCAAGC
AAGAGCTTCCATTATTCGCCAATCGAATAAGCTATCTACATCTCTTCTTC
CCCTACCACCCCTACCCGACCAACCAAAGGGTGTCATCGATCGCACCCGC
ACGCTTGTACGGCAGGCTATGGTGCCATGGCCTCAAGTTTTACTCAATCC
CTACTTTACACACACAGTACATAGAGAACACATTGGGCCTGGCAACTTGT
GGCAAGCAGACCGCTCTCGCTGTTTGTTACTGCACGTTCAATCGCCGGCA
AAAATCAATTGGGCACTGGCAAGACATCAAAGCACATCGATGCAGAGTCC
CTTTCCGTTTACAAAGTAGCAGCAGCAACAACAGTGGAACGACCGGTATG
CATCCTGAATCGTCCTGTCGGAAGCCTACGACTATCAGAGCGACGACGTG
GCTGAGTAGGATGATGCACCAGAACCGCTTGCCCATATTCATCGCAACTC
TCCCTCCCTTCCCCTCCTTCCAACCCTTCCCTCCGCCCCCATCCTCCTTC
CTCACGCAGGAAGGCATGGCATCGTTTTTTCAACCGCGTGCTTGACAAGC
TGGATACGGCATTGGAGGCGTTCAATAGCGCCGTGGATGGGAAGGAGGAG
GAGGAAGATGAAGAGGAAGAGGAAGATGACGACGACGAGGAGGAGGAGAT
GAAGGGGGAAGAGGATGACGAGGATGAAGGTCACATACAAACAGCCGTTG
CTCGTGCTGATATCGCCGCTGCCGGTGCTGCTGGTCGGCCTCCTCAAGAA
CCTTTGCCA
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protein sequence of jgi.p|Nanoce1779_2|427394

>mRNA_4203-protein ID=mRNA_4203-protein|Name=jgi.p|Nanoce1779_2|427394|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MVGVEPSRIPTTTVRKLSILYNCGCHGVAWFFGGDGNRKCSGKQELPLFA
NRISYLHLFFPYHPYPTNQRVSSIAPARLYGRLWCHGLKFYSIPTLHTQY
IENTLGLATCGKQTALAVCYCTFNRRQKSIGHWQDIKAHRCRVPFRLQSS
SSNNSGTTGMHPESSCRKPTTIRATTWLSRMMHQNRLPIFIATLPPFPSF
QPFPPPPSSFLTQEGMASFFQPRA*
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mRNA from alignment at scaffold_8:1129728..1130836+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4203 ID=mRNA_4203|Name=jgi.p|Nanoce1779_2|427394|organism=Nannochloropsis oceanica|type=mRNA|length=1109bp|location=Sequence derived from alignment at scaffold_8:1129728..1130836+ (Nannochloropsis oceanica)
TCTATGAACAAATTACCTTTTTCAGCAATCCTCCGTCCCCGCTCACGTCG
ATCCACTCCCCATTCGTTTTGTCAGCAGCCATATTCGGTAGGTATGCGTC
TACGTGGGTAGACAAGCCTGAAGAGAGAAAGGGAAAAGGAAAAGAGGGTG
TGGTGGGCATGGAAATTTCCATAGTCGAGAGGGAGGGGAGGTCGATAAGG
AAATCGCACGCTCTATTCAAATGGTAGGCGTGGAACCATCCCGCATCCCT
ACAACCACTGTCAGGAAGCTAAGCATCCTGTACAATTGTGGATGCCATGG
CGTGGCTTGGTTTTTTGGAGGCGATGGAAATAGAAAATGTAGTGGCAAGC
AAGAGCTTCCATTATTCGCCAATCGAATAAGCTATCTACATCTCTTCTTC
CCCTACCACCCCTACCCGACCAACCAAAGGGTGTCATCGATCGCACCCGC
ACGCTTGTACGGCAGGCTATGGTGCCATGGCCTCAAGTTTTACTCAATCC
CTACTTTACACACACAGTACATAGAGAACACATTGGGCCTGGCAACTTGT
GGCAAGCAGACCGCTCTCGCTGTTTGTTACTGCACGTTCAATCGCCGGCA
AAAATCAATTGGGCACTGGCAAGACATCAAAGCACATCGATGCAGAGTCC
CTTTCCGTTTACAAAGTAGCAGCAGCAACAACAGTGGAACGACCGGTATG
CATCCTGAATCGTCCTGTCGGAAGCCTACGACTATCAGAGCGACGACGTG
GCTGAGTAGGATGATGCACCAGAACCGCTTGCCCATATTCATCGCAACTC
TCCCTCCCTTCCCCTCCTTCCAACCCTTCCCTCCGCCCCCATCCTCCTTC
CTCACGCAGGAAGGCATGGCATCGTTTTTTCAACCGCGTGCTTGACAAGC
TGGATACGGCATTGGAGGCGTTCAATAGCGCCGTGGATGGGAAGGAGGAG
GAGGAAGATGAAGAGGAAGAGGAAGATGACGACGACGAGGAGGAGGAGAT
GAAGGGGGAAGAGGATGACGAGGATGAAGGTCACATACAAACAGCCGTTG
CTCGTGCTGATATCGCCGCTGCCGGTGCTGCTGGTCGGCCTCCTCAAGAA
CCTTTGCCA
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Coding sequence (CDS) from alignment at scaffold_8:1129728..1130836+

>mRNA_4203 ID=mRNA_4203|Name=jgi.p|Nanoce1779_2|427394|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_8:1129728..1130836+ (Nannochloropsis oceanica)
ATGGTAGGCGTGGAACCATCCCGCATCCCTACAACCACTGTCAGGAAGCT
AAGCATCCTGTACAATTGTGGATGCCATGGCGTGGCTTGGTTTTTTGGAG
GCGATGGAAATAGAAAATGTAGTGGCAAGCAAGAGCTTCCATTATTCGCC
AATCGAATAAGCTATCTACATCTCTTCTTCCCCTACCACCCCTACCCGAC
CAACCAAAGGGTGTCATCGATCGCACCCGCACGCTTGTACGGCAGGCTAT
GGTGCCATGGCCTCAAGTTTTACTCAATCCCTACTTTACACACACAGTAC
ATAGAGAACACATTGGGCCTGGCAACTTGTGGCAAGCAGACCGCTCTCGC
TGTTTGTTACTGCACGTTCAATCGCCGGCAAAAATCAATTGGGCACTGGC
AAGACATCAAAGCACATCGATGCAGAGTCCCTTTCCGTTTACAAAGTAGC
AGCAGCAACAACAGTGGAACGACCGGTATGCATCCTGAATCGTCCTGTCG
GAAGCCTACGACTATCAGAGCGACGACGTGGCTGAGTAGGATGATGCACC
AGAACCGCTTGCCCATATTCATCGCAACTCTCCCTCCCTTCCCCTCCTTC
CAACCCTTCCCTCCGCCCCCATCCTCCTTCCTCACGCAGGAAGGCATGGC
ATCGTTTTTTCAACCGCGTGCTTGA
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Synonyms
Publications