jgi.p|Nanoce1779_2|527064, mRNA_3975 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|527064
Unique Name	mRNA_3975
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	966
Alignment location	scaffold_8:537370..538380 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	527150
Track	FilteredModels2
ProteinId	527064

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:537370..538380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527064	gene_3975	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|527064	mRNA_3975-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3975	CDS_3975	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:537370..538380+
coding sequence from alignment at scaffold_8:537370..538380+

mRNA sequence

>mRNA_3975 ID=mRNA_3975|Name=jgi.p|Nanoce1779_2|527064|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ATGCAAGCCCTCCTAGGACGAACCAACAATGGAACCCGTCTAGCACTGGC
TGGAGCACTCGCCGGTGGGTTCAGCAATCTTGTACTCTACCCCATTGATT
TGGCAAAGACGTTAAAGCAGGCAGGCCCCTCATCCAAAGGTGCGTCCTTG
GCCTCTCAAGCCCGCATCTACGGCCTGGGCTCGCTCTGGGCCGGTTTAAC
ACCCGCCATCGTTGGATCAATGCCCTCGTCTGCCCTGTATTTTGGTGTGT
ACGAATACGTGAAACGCCGGTTGACTGTCCTCGCCAATGCCTCCTCCGTC
CCCATGACCTCGTCCTCCCCCTCCTCGACCGGAGATGATTTATACGGACA
ACGGCCCCACATTCTACGCCGGTGGCTGGTACATGCTGTGGCAGCTGCTT
CGGGGAACACGGCCAGCTCCTTGGTGTTTGTTCCTAAAGAAGTGTTGAAA
CAACAGTTGCAGATGTACCGCAACAGTCATGGTGGTAGCTCGACGACCCT
CCCTCGTGTCCTCGCATCCATTTTGAAAGATAAGGGCATTCTTGGTCTCT
ATAGTGGGTATCGAGCAACATTGCTCCGGAACATACCCTCAGCCATTCTG
CGATTTGCCCTCTACGAGGAATTCAAGCTTTTTTTAGGTGCAGCAAAATG
GTTGAGCCTCAGCGCACCGCAGGTTGCGATCGCAGCAGGGGCCTTGGCAG
GTGCCTTTTCGAGTGCAGCGACTACGCCATTGGATGTGGTAAAAACCCGG
ATGGCCATAAATGCGTGTCCGCCGGGGAGGGACGTACTAGGGTGTCTCGT
TGAGGTTGCGCAACGGGAGGGCGTGCCGGGCTTGTACGCGGGCCTGGGAT
TCCGGGTGCTGTACTCAGCCTTGTTCACAGCAGTGGGCTTCTCGTCGTTT
GAGGCCAGCAAGGCCTTGTTGGGGGTGGGGGATGGGGAAAGGCAGGGCGG
GAGGAAGAAGGAGTAG

protein sequence of jgi.p|Nanoce1779_2|527064

>mRNA_3975-protein ID=mRNA_3975-protein|Name=jgi.p|Nanoce1779_2|527064|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MQALLGRTNNGTRLALAGALAGGFSNLVLYPIDLAKTLKQAGPSSKGASL
ASQARIYGLGSLWAGLTPAIVGSMPSSALYFGVYEYVKRRLTVLANASSV
PMTSSSPSSTGDDLYGQRPHILRRWLVHAVAAASGNTASSLVFVPKEVLK
QQLQMYRNSHGGSSTTLPRVLASILKDKGILGLYSGYRATLLRNIPSAIL
RFALYEEFKLFLGAAKWLSLSAPQVAIAAGALAGAFSSAATTPLDVVKTR
MAINACPPGRDVLGCLVEVAQREGVPGLYAGLGFRVLYSALFTAVGFSSF
EASKALLGVGDGERQGGRKKE*

mRNA from alignment at scaffold_8:537370..538380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3975 ID=mRNA_3975|Name=jgi.p|Nanoce1779_2|527064|organism=Nannochloropsis oceanica|type=mRNA|length=1011bp|location=Sequence derived from alignment at scaffold_8:537370..538380+ (Nannochloropsis oceanica)
ATGCAAGCCCTCCTAGGACGAACCAACAATGGAACCCGTCTAGCACTGGC
TGGAGCACTCGCCGGTGGGTTCAGCAATCTTGTACTCTACCCCATTGATT
TGGCAAAGACGTTAAAGCAGGCAGGCCCCTCATCCAAAGGTGCGTCCTTG
GCCTCTCAAGCCCGCATCTACGGCCTGGGCTCGCTCTGGGCCGGTTTAAC
ACCCGCCATCGTTGGATCAATGCCCTCGTCTGCCCTGTATTTTGGTGTGT
ACGAATACGTGAAACGCCGGTTGACTGTCCTCGCCAATGCCTCCTCCGTC
CCCATGACCTCGTCCTCCCCCTCCTCGACCGGAGATGATTTATACGGACA
ACGGCCCCACATTCTACGCCGGTGGCTGGTACATGCTGTGGCAGCTGCTT
CGGGGAACACGGCCAGCTCCTTGGTGTTTGTTCCTAAAGAAGTGTTGAAA
CAACAGTTGCAGATGTACCGCAACAGTCATGGTGGTAGCTCGACGACCCT
CCCTCGTGTCCTCGCATCCATTTTGAAAGATAAGGGCATTCTTGGTCTCT
ATAGTGGGTATCGAGCAACATTGCTCCGGAACATACCCTCAGCCATTCTG
CGATTTGCCCTCTACGAGGAATTCAAGCTTTTTTTAGGTGGAGGAGGGGC
AGCAGCAGTCGTAGCAGCTGCAGGAGCAACAGGTGCAGCAAAATGGTTGA
GCCTCAGCGCACCGCAGGTTGCGATCGCAGCAGGGGCCTTGGCAGGTGCC
TTTTCGAGTGCAGCGACTACGCCATTGGATGTGGTAAAAACCCGGATGGC
CATAAATGCGTGTCCGCCGGGGAGGGACGTACTAGGGTGTCTCGTTGAGG
TTGCGCAACGGGAGGGCGTGCCGGGCTTGTACGCGGGCCTGGGATTCCGG
GTGCTGTACTCAGCCTTGTTCACAGCAGTGGGCTTCTCGTCGTTTGAGGC
CAGCAAGGCCTTGTTGGGGGTGGGGGATGGGGAAAGGCAGGGCGGGAGGA
AGAAGGAGTAG

Coding sequence (CDS) from alignment at scaffold_8:537370..538380+

>mRNA_3975 ID=mRNA_3975|Name=jgi.p|Nanoce1779_2|527064|organism=Nannochloropsis oceanica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_8:537370..538380+ (Nannochloropsis oceanica)
ATGCAAGCCCTCCTAGGACGAACCAACAATGGAACCCGTCTAGCACTGGC
TGGAGCACTCGCCGGTGGGTTCAGCAATCTTGTACTCTACCCCATTGATT
TGGCAAAGACGTTAAAGCAGGCAGGCCCCTCATCCAAAGGTGCGTCCTTG
GCCTCTCAAGCCCGCATCTACGGCCTGGGCTCGCTCTGGGCCGGTTTAAC
ACCCGCCATCGTTGGATCAATGCCCTCGTCTGCCCTGTATTTTGGTGTGT
ACGAATACGTGAAACGCCGGTTGACTGTCCTCGCCAATGCCTCCTCCGTC
CCCATGACCTCGTCCTCCCCCTCCTCGACCGGAGATGATTTATACGGACA
ACGGCCCCACATTCTACGCCGGTGGCTGGTACATGCTGTGGCAGCTGCTT
CGGGGAACACGGCCAGCTCCTTGGTGTTTGTTCCTAAAGAAGTGTTGAAA
CAACAGTTGCAGATGTACCGCAACAGTCATGGTGGTAGCTCGACGACCCT
CCCTCGTGTCCTCGCATCCATTTTGAAAGATAAGGGCATTCTTGGTCTCT
ATAGTGGGTATCGAGCAACATTGCTCCGGAACATACCCTCAGCCATTCTG
CGATTTGCCCTCTACGAGGAATTCAAGCTTTTTTTAGGTGCAGCAAAATG
GTTGAGCCTCAGCGCACCGCAGGTTGCGATCGCAGCAGGGGCCTTGGCAG
GTGCCTTTTCGAGTGCAGCGACTACGCCATTGGATGTGGTAAAAACCCGG
ATGGCCATAAATGCGTGTCCGCCGGGGAGGGACGTACTAGGGTGTCTCGT
TGAGGTTGCGCAACGGGAGGGCGTGCCGGGCTTGTACGCGGGCCTGGGAT
TCCGGGTGCTGTACTCAGCCTTGTTCACAGCAGTGGGCTTCTCGTCGTTT
GAGGCCAGCAAGGCCTTGTTGGGGGTGGGGGATGGGGAAAGGCAGGGCGG
GAGGAAGAAGGAGTAGATGCAAGCCCTCCTAGGACGAACCAACAATGGAA
CCCGTCTAGCACTGGCTGGAGCACTCGCCGGTGGGTTCAGCAATCTTGTA
CTCTACCCCATTGATTTGGCAAAGACGTTAAAGCAGGCAGGCCCCTCATC
CAAAGGTGCGTCCTTGGCCTCTCAAGCCCGCATCTACGGCCTGGGCTCGC
TCTGGGCCGGTTTAACACCCGCCATCGTTGGATCAATGCCCTCGTCTGCC
CTGTATTTTGGTGTGTACGAATACGTGAAACGCCGGTTGACTGTCCTCGC
CAATGCCTCCTCCGTCCCCATGACCTCGTCCTCCCCCTCCTCGACCGGAG
ATGATTTATACGGACAACGGCCCCACATTCTACGCCGGTGGCTGGTACAT
GCTGTGGCAGCTGCTTCGGGGAACACGGCCAGCTCCTTGGTGTTTGTTCC
TAAAGAAGTGTTGAAACAACAGTTGCAGATGTACCGCAACAGTCATGGTG
GTAGCTCGACGACCCTCCCTCGTGTCCTCGCATCCATTTTGAAAGATAAG
GGCATTCTTGGTCTCTATAGTGGGTATCGAGCAACATTGCTCCGGAACAT
ACCCTCAGCCATTCTGCGATTTGCCCTCTACGAGGAATTCAAGCTTTTTT
TAGGTGCAGCAAAATGGTTGAGCCTCAGCGCACCGCAGGTTGCGATCGCA
GCAGGGGCCTTGGCAGGTGCCTTTTCGAGTGCAGCGACTACGCCATTGGA
TGTGGTAAAAACCCGGATGGCCATAAATGCGTGTCCGCCGGGGAGGGACG
TACTAGGGTGTCTCGTTGAGGTTGCGCAACGGGAGGGCGTGCCGGGCTTG
TACGCGGGCCTGGGATTCCGGGTGCTGTACTCAGCCTTGTTCACAGCAGT
GGGCTTCTCGTCGTTTGAGGCCAGCAAGGCCTTGTTGGGGGTGGGGGATG
GGGAAAGGCAGGGCGGGAGGAAGAAGGAGTAG

Synonyms

Publications