jgi.p|Nanoce1779_2|585955, mRNA_3954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|585955
Unique Name	mRNA_3954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1782
Alignment location	scaffold_8:484712..486710 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586041
Track	FilteredModels2
ProteinId	585955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:484712..486710 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585955	gene_3954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|585955	mRNA_3954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3954	CDS_3954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:484712..486710+
coding sequence from alignment at scaffold_8:484712..486710+

mRNA sequence

>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Nanoce1779_2|585955|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp
ACAGCAAGGCAGATAACGACTCACATCCAGCTCGTCTTCATAGCCATGGC
AGAAGGCAGCAGCGTTGTCCGCACCTTTGACGAGGAAATGAAATACATAC
ACCGGGAGACACCCACCCGCTTTCGAATCGACAAGGGCTGTGTCCCCAAC
ATGCGTGTAGAAGGCGCGTTTTACGTTAATTCAAAATTAGAACAACTGAT
GTTTGACGAGCTCAAGCAGCATATCACCGCGGGGGGGGTCGGTGGGTTCT
TGCCTGCAGTGAAGCAGATAGCGAATGTGGCTGCCTTGCCCGGGATTGTG
GGCCGGTCCATCGGTCTCCCCGACGTCCACTCAGGGTACGGTTTTGCCAT
CGGGAATGTGGCCGCCTTCGACATGTCCGATCCCGAGGCAATTGTCTCTC
CGGGTGGTGTGGGGTTTGACATCAATTGTGGCGTCCGTCTAATTAGGACG
AATTTAAACGAGAAGGACATAGCGCCTCTGAAGGAGGAATTGACGCAGTC
GTTGTTCGATCATATACCGGTAGGGGTGGGGAGTAAGGGGGTTATACCGA
CCTCAGCTGGGGATTTGGAGGCAGCGTTAGAGATGGGCATGGATTGGAGC
CTGAGGGAGGGGTATGCATGGGCCGAGGACAAGGAGCACTGCGAGGAGTA
CGGAAGGATGCTGCAGGCCGATCCGACCAAAGTAGGGGCAAGGGCAAAGA
AGAGGGGGCTGCCGCAGCTGGGCACGCTTGGGGCGGGTAATCACTACGCG
GAGATTCAGGTGGTGGAGGAGATAGACGACGAGAGGGCGGCAGCAAGGAT
GGGGATCGATCAGATCGGGCAGGTATGTATCATGATTCATTCGGGGAGTA
GGGGGTTGGGACACCAGGTCGCAACAGACGCATTAGTAGAGATGGAGCGG
GCTATGGCCAGGGATGGCATTCACACGAATGATCGGCAGTTGGCCTGTGC
ACGGATTCAAAGCAAGGAGGGCCAGAATTACTTGGCGGCTATGGCGGCGG
CTGCGAATTTTGCATGGGTGAATAGGAGTAGTATGACATTTTTAACGAGG
CAGGCATTCGCAAAGATGTTTAAGACCAGCCCGGATGACTTAGATATGCA
CGTGATATATGATGTGTCACATAACATTGCCAAGGTGGAGGAGCACATGT
TTCAGGGGAAGCCCAAGAGGCTGTTGGTGCATAGGAAAGGGTCCACGAGG
GCCTTCCCGCCGCATCACCCACTGATTCCGGTAGATTATCAGTTCACGGG
TCAGCCAGTTCTGATTGGAGGGACGATGGGGACGTGTAGTTATGTGCTGA
CTGGCACAGATCAAGGAATGGAGGAGACATTTGGGAGTACTTGTCACGGG
GCGGGGCGGGCGCAGAGTCGGAATAAAAGCCGTAAGAATTTGGAGTACAC
GGAAGTGCTGGACGCGTTGGCAAAGAAAGGAATAAGCATTCGTGTGGCAA
GCCCGAAGTTGGTCATGGAGGAGGCGCCAGAATCGTACAAGGATGTAACG
CAGGTGGTGGATACGTGCCATGATGCCGGGGTAAGTCGGAAGGCGATCAG
GTTGCGCCCGATTGCAGTAGTCAAGGGATAAGGGAGGGTTCCGGAAAGTT
GGAGGAGGAGAAAGGTGGGATAGGTTGAGTTGATAGCTTAAACAGCCTGC
TTCGGCGTTCGCCATACAAGGCCTCCCCGAGGGTACATTCAAAAGAAAAA
AGACAAGACGAGACAAGACCCTGAAACTGAAGAAGGATAAGAAAGCATTG
AAACATTAGACAAATAAAAGACATGCTTGACG

protein sequence of jgi.p|Nanoce1779_2|585955

>mRNA_3954-protein ID=mRNA_3954-protein|Name=jgi.p|Nanoce1779_2|585955|organism=Nannochloropsis oceanica|type=polypeptide|length=512bp
MAEGSSVVRTFDEEMKYIHRETPTRFRIDKGCVPNMRVEGAFYVNSKLEQ
LMFDELKQHITAGGVGGFLPAVKQIANVAALPGIVGRSIGLPDVHSGYGF
AIGNVAAFDMSDPEAIVSPGGVGFDINCGVRLIRTNLNEKDIAPLKEELT
QSLFDHIPVGVGSKGVIPTSAGDLEAALEMGMDWSLREGYAWAEDKEHCE
EYGRMLQADPTKVGARAKKRGLPQLGTLGAGNHYAEIQVVEEIDDERAAA
RMGIDQIGQVCIMIHSGSRGLGHQVATDALVEMERAMARDGIHTNDRQLA
CARIQSKEGQNYLAAMAAAANFAWVNRSSMTFLTRQAFAKMFKTSPDDLD
MHVIYDVSHNIAKVEEHMFQGKPKRLLVHRKGSTRAFPPHHPLIPVDYQF
TGQPVLIGGTMGTCSYVLTGTDQGMEETFGSTCHGAGRAQSRNKSRKNLE
YTEVLDALAKKGISIRVASPKLVMEEAPESYKDVTQVVDTCHDAGVSRKA
IRLRPIAVVKG*

mRNA from alignment at scaffold_8:484712..486710+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Nanoce1779_2|585955|organism=Nannochloropsis oceanica|type=mRNA|length=1999bp|location=Sequence derived from alignment at scaffold_8:484712..486710+ (Nannochloropsis oceanica)
ACAGCAAGGCAGATAACGACTCACATCCAGCTCGTCTTCATAGCCATGGC
AGAAGGCAGCAGCGTTGTCCGCACCTTTGACGAGGAAATGAAATACATAC
ACCGGGAGACACCCACCCGCTTTCGAATCGACAAGGGCTGTGTCCCCAAC
ATGCGTGTAGAAGGCGCGTTTTACGTTAATTCAAAATTAGAACAACTGAT
GTTTGACGAGCTCAAGCAGCATATCACCGCGGGGGGGGTCGGTGGGTTCT
TGCCTGCAGTGAAGCAGATAGCGAATGTGGCTGCCTTGCCCGGGATTGTG
GGCCGGGTAAGGAGGAGAGGGATGGAGGGAGGGAAGGAGGGAAGGAAGAA
TAAAGGAAGGGAGGTACGGAGGGGTATTTGCAAGTGGATACTGTACCCGG
CTAATTTTATAAGTTTCTGATAGAAACGCAAGCAAAACAATAACTCCTTA
GAAATCTTGTGGCTTTCACAATTCCCTTATATTTACCACCCCACCCTCCC
TCCCTCCCTCCCTCCCTCTCCAGTCCATCGGTCTCCCCGACGTCCACTCA
GGGTACGGTTTTGCCATCGGGAATGTGGCCGCCTTCGACATGTCCGATCC
CGAGGCAATTGTCTCTCCGGGTGGTGTGGGGTTTGACATCAATTGTGGCG
TCCGTCTAATTAGGACGAATTTAAACGAGAAGGACATAGCGCCTCTGAAG
GAGGAATTGACGCAGTCGTTGTTCGATCATATACCGGTAGGGGTGGGGAG
TAAGGGGGTTATACCGACCTCAGCTGGGGATTTGGAGGCAGCGTTAGAGA
TGGGCATGGATTGGAGCCTGAGGGAGGGGTATGCATGGGCCGAGGACAAG
GAGCACTGCGAGGAGTACGGAAGGATGCTGCAGGCCGATCCGACCAAAGT
AGGGGCAAGGGCAAAGAAGAGGGGGCTGCCGCAGCTGGGCACGCTTGGGG
CGGGTAATCACTACGCGGAGATTCAGGTGGTGGAGGAGATAGACGACGAG
AGGGCGGCAGCAAGGATGGGGATCGATCAGATCGGGCAGGTATGTATCAT
GATTCATTCGGGGAGTAGGGGGTTGGGACACCAGGTCGCAACAGACGCAT
TAGTAGAGATGGAGCGGGCTATGGCCAGGGATGGCATTCACACGAATGAT
CGGCAGTTGGCCTGTGCACGGATTCAAAGCAAGGAGGGCCAGAATTACTT
GGCGGCTATGGCGGCGGCTGCGAATTTTGCATGGGTGAATAGGAGTAGTA
TGACATTTTTAACGAGGCAGGCATTCGCAAAGATGTTTAAGACCAGCCCG
GATGACTTAGATATGCACGTGATATATGATGTGTCACATAACATTGCCAA
GGTGGAGGAGCACATGTTTCAGGGGAAGCCCAAGAGGCTGTTGGTGCATA
GGAAAGGGTCCACGAGGGCCTTCCCGCCGCATCACCCACTGATTCCGGTA
GATTATCAGTTCACGGGTCAGCCAGTTCTGATTGGAGGGACGATGGGGAC
GTGTAGTTATGTGCTGACTGGCACAGATCAAGGAATGGAGGAGACATTTG
GGAGTACTTGTCACGGGGCGGGGCGGGCGCAGAGTCGGAATAAAAGCCGT
AAGAATTTGGAGTACACGGAAGTGCTGGACGCGTTGGCAAAGAAAGGAAT
AAGCATTCGTGTGGCAAGCCCGAAGTTGGTCATGGAGGAGGCGCCAGAAT
CGTACAAGGATGTAACGCAGGTGGTGGATACGTGCCATGATGCCGGGGTA
AGTCGGAAGGCGATCAGGTTGCGCCCGATTGCAGTAGTCAAGGGATAAGG
GAGGGTTCCGGAAAGTTGGAGGAGGAGAAAGGTGGGATAGGTTGAGTTGA
TAGCTTAAACAGCCTGCTTCGGCGTTCGCCATACAAGGCCTCCCCGAGGG
TACATTCAAAAGAAAAAAGACAAGACGAGACAAGACCCTGAAACTGAAGA
AGGATAAGAAAGCATTGAAACATTAGACAAATAAAAGACATGCTTGACG

Coding sequence (CDS) from alignment at scaffold_8:484712..486710+

>mRNA_3954 ID=mRNA_3954|Name=jgi.p|Nanoce1779_2|585955|organism=Nannochloropsis oceanica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_8:484712..486710+ (Nannochloropsis oceanica)
ATGGCAGAAGGCAGCAGCGTTGTCCGCACCTTTGACGAGGAAATGAAATA
CATACACCGGGAGACACCCACCCGCTTTCGAATCGACAAGGGCTGTGTCC
CCAACATGCGTGTAGAAGGCGCGTTTTACGTTAATTCAAAATTAGAACAA
CTGATGTTTGACGAGCTCAAGCAGCATATCACCGCGGGGGGGGTCGGTGG
GTTCTTGCCTGCAGTGAAGCAGATAGCGAATGTGGCTGCCTTGCCCGGGA
TTGTGGGCCGGTCCATCGGTCTCCCCGACGTCCACTCAGGGTACGGTTTT
GCCATCGGGAATGTGGCCGCCTTCGACATGTCCGATCCCGAGGCAATTGT
CTCTCCGGGTGGTGTGGGGTTTGACATCAATTGTGGCGTCCGTCTAATTA
GGACGAATTTAAACGAGAAGGACATAGCGCCTCTGAAGGAGGAATTGACG
CAGTCGTTGTTCGATCATATACCGGTAGGGGTGGGGAGTAAGGGGGTTAT
ACCGACCTCAGCTGGGGATTTGGAGGCAGCGTTAGAGATGGGCATGGATT
GGAGCCTGAGGGAGGGGTATGCATGGGCCGAGGACAAGGAGCACTGCGAG
GAGTACGGAAGGATGCTGCAGGCCGATCCGACCAAAGTAGGGGCAAGGGC
AAAGAAGAGGGGGCTGCCGCAGCTGGGCACGCTTGGGGCGGGTAATCACT
ACGCGGAGATTCAGGTGGTGGAGGAGATAGACGACGAGAGGGCGGCAGCA
AGGATGGGGATCGATCAGATCGGGCAGGTATGTATCATGATTCATTCGGG
GAGTAGGGGGTTGGGACACCAGGTCGCAACAGACGCATTAGTAGAGATGG
AGCGGGCTATGGCCAGGGATGGCATTCACACGAATGATCGGCAGTTGGCC
TGTGCACGGATTCAAAGCAAGGAGGGCCAGAATTACTTGGCGGCTATGGC
GGCGGCTGCGAATTTTGCATGGGTGAATAGGAGTAGTATGACATTTTTAA
CGAGGCAGGCATTCGCAAAGATGTTTAAGACCAGCCCGGATGACTTAGAT
ATGCACGTGATATATGATGTGTCACATAACATTGCCAAGGTGGAGGAGCA
CATGTTTCAGGGGAAGCCCAAGAGGCTGTTGGTGCATAGGAAAGGGTCCA
CGAGGGCCTTCCCGCCGCATCACCCACTGATTCCGGTAGATTATCAGTTC
ACGGGTCAGCCAGTTCTGATTGGAGGGACGATGGGGACGTGTAGTTATGT
GCTGACTGGCACAGATCAAGGAATGGAGGAGACATTTGGGAGTACTTGTC
ACGGGGCGGGGCGGGCGCAGAGTCGGAATAAAAGCCGTAAGAATTTGGAG
TACACGGAAGTGCTGGACGCGTTGGCAAAGAAAGGAATAAGCATTCGTGT
GGCAAGCCCGAAGTTGGTCATGGAGGAGGCGCCAGAATCGTACAAGGATG
TAACGCAGGTGGTGGATACGTGCCATGATGCCGGGGTAAGTCGGAAGGCG
ATCAGGTTGCGCCCGATTGCAGTAGTCAAGGGATAAATGGCAGAAGGCAG
CAGCGTTGTCCGCACCTTTGACGAGGAAATGAAATACATACACCGGGAGA
CACCCACCCGCTTTCGAATCGACAAGGGCTGTGTCCCCAACATGCGTGTA
GAAGGCGCGTTTTACGTTAATTCAAAATTAGAACAACTGATGTTTGACGA
GCTCAAGCAGCATATCACCGCGGGGGGGGTCGGTGGGTTCTTGCCTGCAG
TGAAGCAGATAGCGAATGTGGCTGCCTTGCCCGGGATTGTGGGCCGGTCC
ATCGGTCTCCCCGACGTCCACTCAGGGTACGGTTTTGCCATCGGGAATGT
GGCCGCCTTCGACATGTCCGATCCCGAGGCAATTGTCTCTCCGGGTGGTG
TGGGGTTTGACATCAATTGTGGCGTCCGTCTAATTAGGACGAATTTAAAC
GAGAAGGACATAGCGCCTCTGAAGGAGGAATTGACGCAGTCGTTGTTCGA
TCATATACCGGTAGGGGTGGGGAGTAAGGGGGTTATACCGACCTCAGCTG
GGGATTTGGAGGCAGCGTTAGAGATGGGCATGGATTGGAGCCTGAGGGAG
GGGTATGCATGGGCCGAGGACAAGGAGCACTGCGAGGAGTACGGAAGGAT
GCTGCAGGCCGATCCGACCAAAGTAGGGGCAAGGGCAAAGAAGAGGGGGC
TGCCGCAGCTGGGCACGCTTGGGGCGGGTAATCACTACGCGGAGATTCAG
GTGGTGGAGGAGATAGACGACGAGAGGGCGGCAGCAAGGATGGGGATCGA
TCAGATCGGGCAGGTATGTATCATGATTCATTCGGGGAGTAGGGGGTTGG
GACACCAGGTCGCAACAGACGCATTAGTAGAGATGGAGCGGGCTATGGCC
AGGGATGGCATTCACACGAATGATCGGCAGTTGGCCTGTGCACGGATTCA
AAGCAAGGAGGGCCAGAATTACTTGGCGGCTATGGCGGCGGCTGCGAATT
TTGCATGGGTGAATAGGAGTAGTATGACATTTTTAACGAGGCAGGCATTC
GCAAAGATGTTTAAGACCAGCCCGGATGACTTAGATATGCACGTGATATA
TGATGTGTCACATAACATTGCCAAGGTGGAGGAGCACATGTTTCAGGGGA
AGCCCAAGAGGCTGTTGGTGCATAGGAAAGGGTCCACGAGGGCCTTCCCG
CCGCATCACCCACTGATTCCGGTAGATTATCAGTTCACGGGTCAGCCAGT
TCTGATTGGAGGGACGATGGGGACGTGTAGTTATGTGCTGACTGGCACAG
ATCAAGGAATGGAGGAGACATTTGGGAGTACTTGTCACGGGGCGGGGCGG
GCGCAGAGTCGGAATAAAAGCCGTAAGAATTTGGAGTACACGGAAGTGCT
GGACGCGTTGGCAAAGAAAGGAATAAGCATTCGTGTGGCAAGCCCGAAGT
TGGTCATGGAGGAGGCGCCAGAATCGTACAAGGATGTAACGCAGGTGGTG
GATACGTGCCATGATGCCGGGGTAAGTCGGAAGGCGATCAGGTTGCGCCC
GATTGCAGTAGTCAAGGGATAA

Synonyms

Publications