jgi.p|Nanoce1779_2|585982, mRNA_3964 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585982
Unique NamemRNA_3964
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1579
Alignment locationscaffold_8:517222..518800 +

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Properties
Property NameValue
TranscriptId586068
TrackFilteredModels2
ProteinId585982
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:517222..518800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585982gene_3964Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585982mRNA_3964-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3964CDS_3964Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3964 ID=mRNA_3964|Name=jgi.p|Nanoce1779_2|585982|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp
GGCACGGGCAAGAAGTATGTAGCTATTCCCAACTCCTACCTCCTCTCTGA
CCGGGTTTCCGTCTAAGCATCGTGCTTTCTTTCTCGATTTACCCCATTCA
TGTAACTCACCCCTCCACCCTATCATCACAAACAAATAGCATGACCTCCG
CCGACTACTACTTCGACTCCTACTCCCACTTTGGGATCCACGAAGAAATG
CTCAAAGATGAAGTCCGGACCCGGAGCTACATGAACGCCATCATGCGGAA
CAAACACCTCTTCGAGGGTAAGGTCGTGTTGGACGTGGGGTGCGGGACTG
GCATTTTGTCAATGTTTGCCGCTAAGGCAGGCGCCGCCAAGGTGATAGGG
GTCGATTGCTCCACTATCCTCGAGCAGGCTAAACAGATCGTGGCCACTAA
TGGCTTCGCGGATCGCATCACGCTTATCCGAGGCAAAGTTGAGGAGATCG
AGCTGCCTGTTGAAAGCGTCGACATCATCATCTCGGAATGGATGGGCTAC
TTCCTTTTGTACGAGTCCATGCTCGACACCGTCCTCTATGCCCGCGACAA
GTGGCTTGTCCCGGGGGGGTTAATCCTCCCCGATAAAGCAACCCTCTGCA
TTTGTGCCATCGAAGACGAAGAGTACAAGCATGAAAAAATCGATTTTTGG
GATGATGTTTACGGGTTTGACATGTCCGCAATAAAGTCTCTGGCGATACT
GGAGCCCCTCGTGGATGTTGTCGAGGCCAAGAGTGTGGTCACTAATCAGG
CACCGATTTTGGAATTGGATCTCTTGACGTGTACTAAGGAGGATTTGAGT
TTCAGTGCTGCCTTTACCTTGCCGGCACGGAGAAATGACTACGTGCATGC
GTTGGTGGCGTATTTTGATTGTGCCTTCACTCAGTTGCATAAGCCGTTGA
CATTCTCGACTGGGCCGTTTGCCAAGTACACGCATTGGAAGCAGACTGTG
TTTTATTTGAGTGACACCTTGACGGTGTGTACGGGGGAGGAAGTGAAGGG
GACGATTAGCTCAGCGCCGAATGATCGAAATCCGCGCGATCTGGATATTC
ATATCGATTTGGCTTTCGAGGGGAAGCACGGCAAGGTGACGGCGAGTCAG
GATTTCAGGTTGCGGTAGAGGGAGGAAGGGAGAGCAGGATGGAGAAATAG
AAGAGGTGCATCTTGGTCTGATTGCCCGTGAGTGGCGATGACGATAAGAA
GACAACAAGGAGGAGACGTCGGGTGGGAAGGAAGAGAAGGAGGATGAGAA
GGAAAAGAGTTAGGGATGGTATGCGTGAACGCGACCGTAGTGGTTTGTAT
CTCAGCAACACGGGATAACACGAAGAATTCGAAAACTAGTGATGAAGTAA
TGTATACTTATGACAATACAATCCTTCACAATTATAATATAGGCAAGCGT
GCAGGCAATTAGTTTTGTATACAGCGCAGATCGATCGATCCCTCCTTTCA
CTTTCAACTACAAATAGGGATACGACGAGTGAAGAAGATTGTTGAGAGAA
AAGGTCAGAAAGTAGTACACGAGTAAGTGAAGAGGAAAGCAATGCCAGGA
AAAGAAAGAACAACCCTATCGTCCTTCCA
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protein sequence of jgi.p|Nanoce1779_2|585982

>mRNA_3964-protein ID=mRNA_3964-protein|Name=jgi.p|Nanoce1779_2|585982|organism=Nannochloropsis oceanica|type=polypeptide|length=326bp
MTSADYYFDSYSHFGIHEEMLKDEVRTRSYMNAIMRNKHLFEGKVVLDVG
CGTGILSMFAAKAGAAKVIGVDCSTILEQAKQIVATNGFADRITLIRGKV
EEIELPVESVDIIISEWMGYFLLYESMLDTVLYARDKWLVPGGLILPDKA
TLCICAIEDEEYKHEKIDFWDDVYGFDMSAIKSLAILEPLVDVVEAKSVV
TNQAPILELDLLTCTKEDLSFSAAFTLPARRNDYVHALVAYFDCAFTQLH
KPLTFSTGPFAKYTHWKQTVFYLSDTLTVCTGEEVKGTISSAPNDRNPRD
LDIHIDLAFEGKHGKVTASQDFRLR*
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mRNA from alignment at scaffold_8:517222..518800+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3964 ID=mRNA_3964|Name=jgi.p|Nanoce1779_2|585982|organism=Nannochloropsis oceanica|type=mRNA|length=1579bp|location=Sequence derived from alignment at scaffold_8:517222..518800+ (Nannochloropsis oceanica)
GGCACGGGCAAGAAGTATGTAGCTATTCCCAACTCCTACCTCCTCTCTGA
CCGGGTTTCCGTCTAAGCATCGTGCTTTCTTTCTCGATTTACCCCATTCA
TGTAACTCACCCCTCCACCCTATCATCACAAACAAATAGCATGACCTCCG
CCGACTACTACTTCGACTCCTACTCCCACTTTGGGATCCACGAAGAAATG
CTCAAAGATGAAGTCCGGACCCGGAGCTACATGAACGCCATCATGCGGAA
CAAACACCTCTTCGAGGGTAAGGTCGTGTTGGACGTGGGGTGCGGGACTG
GCATTTTGTCAATGTTTGCCGCTAAGGCAGGCGCCGCCAAGGTGATAGGG
GTCGATTGCTCCACTATCCTCGAGCAGGCTAAACAGATCGTGGCCACTAA
TGGCTTCGCGGATCGCATCACGCTTATCCGAGGCAAAGTTGAGGAGATCG
AGCTGCCTGTTGAAAGCGTCGACATCATCATCTCGGAATGGATGGGCTAC
TTCCTTTTGTACGAGTCCATGCTCGACACCGTCCTCTATGCCCGCGACAA
GTGGCTTGTCCCGGGGGGGTTAATCCTCCCCGATAAAGCAACCCTCTGCA
TTTGTGCCATCGAAGACGAAGAGTACAAGCATGAAAAAATCGATTTTTGG
GATGATGTTTACGGGTTTGACATGTCCGCAATAAAGTCTCTGGCGATACT
GGAGCCCCTCGTGGATGTTGTCGAGGCCAAGAGTGTGGTCACTAATCAGG
CACCGATTTTGGAATTGGATCTCTTGACGTGTACTAAGGAGGATTTGAGT
TTCAGTGCTGCCTTTACCTTGCCGGCACGGAGAAATGACTACGTGCATGC
GTTGGTGGCGTATTTTGATTGTGCCTTCACTCAGTTGCATAAGCCGTTGA
CATTCTCGACTGGGCCGTTTGCCAAGTACACGCATTGGAAGCAGACTGTG
TTTTATTTGAGTGACACCTTGACGGTGTGTACGGGGGAGGAAGTGAAGGG
GACGATTAGCTCAGCGCCGAATGATCGAAATCCGCGCGATCTGGATATTC
ATATCGATTTGGCTTTCGAGGGGAAGCACGGCAAGGTGACGGCGAGTCAG
GATTTCAGGTTGCGGTAGAGGGAGGAAGGGAGAGCAGGATGGAGAAATAG
AAGAGGTGCATCTTGGTCTGATTGCCCGTGAGTGGCGATGACGATAAGAA
GACAACAAGGAGGAGACGTCGGGTGGGAAGGAAGAGAAGGAGGATGAGAA
GGAAAAGAGTTAGGGATGGTATGCGTGAACGCGACCGTAGTGGTTTGTAT
CTCAGCAACACGGGATAACACGAAGAATTCGAAAACTAGTGATGAAGTAA
TGTATACTTATGACAATACAATCCTTCACAATTATAATATAGGCAAGCGT
GCAGGCAATTAGTTTTGTATACAGCGCAGATCGATCGATCCCTCCTTTCA
CTTTCAACTACAAATAGGGATACGACGAGTGAAGAAGATTGTTGAGAGAA
AAGGTCAGAAAGTAGTACACGAGTAAGTGAAGAGGAAAGCAATGCCAGGA
AAAGAAAGAACAACCCTATCGTCCTTCCA
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Coding sequence (CDS) from alignment at scaffold_8:517222..518800+

>mRNA_3964 ID=mRNA_3964|Name=jgi.p|Nanoce1779_2|585982|organism=Nannochloropsis oceanica|type=CDS|length=978bp|location=Sequence derived from alignment at scaffold_8:517222..518800+ (Nannochloropsis oceanica)
ATGACCTCCGCCGACTACTACTTCGACTCCTACTCCCACTTTGGGATCCA
CGAAGAAATGCTCAAAGATGAAGTCCGGACCCGGAGCTACATGAACGCCA
TCATGCGGAACAAACACCTCTTCGAGGGTAAGGTCGTGTTGGACGTGGGG
TGCGGGACTGGCATTTTGTCAATGTTTGCCGCTAAGGCAGGCGCCGCCAA
GGTGATAGGGGTCGATTGCTCCACTATCCTCGAGCAGGCTAAACAGATCG
TGGCCACTAATGGCTTCGCGGATCGCATCACGCTTATCCGAGGCAAAGTT
GAGGAGATCGAGCTGCCTGTTGAAAGCGTCGACATCATCATCTCGGAATG
GATGGGCTACTTCCTTTTGTACGAGTCCATGCTCGACACCGTCCTCTATG
CCCGCGACAAGTGGCTTGTCCCGGGGGGGTTAATCCTCCCCGATAAAGCA
ACCCTCTGCATTTGTGCCATCGAAGACGAAGAGTACAAGCATGAAAAAAT
CGATTTTTGGGATGATGTTTACGGGTTTGACATGTCCGCAATAAAGTCTC
TGGCGATACTGGAGCCCCTCGTGGATGTTGTCGAGGCCAAGAGTGTGGTC
ACTAATCAGGCACCGATTTTGGAATTGGATCTCTTGACGTGTACTAAGGA
GGATTTGAGTTTCAGTGCTGCCTTTACCTTGCCGGCACGGAGAAATGACT
ACGTGCATGCGTTGGTGGCGTATTTTGATTGTGCCTTCACTCAGTTGCAT
AAGCCGTTGACATTCTCGACTGGGCCGTTTGCCAAGTACACGCATTGGAA
GCAGACTGTGTTTTATTTGAGTGACACCTTGACGGTGTGTACGGGGGAGG
AAGTGAAGGGGACGATTAGCTCAGCGCCGAATGATCGAAATCCGCGCGAT
CTGGATATTCATATCGATTTGGCTTTCGAGGGGAAGCACGGCAAGGTGAC
GGCGAGTCAGGATTTCAGGTTGCGGTAG
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Synonyms
Publications