jgi.p|Nanoce1779_2|585688, mRNA_3874 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585688
Unique NamemRNA_3874
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length566
Alignment locationscaffold_8:281561..282126 +

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Properties
Property NameValue
TranscriptId585774
TrackFilteredModels2
ProteinId585688
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:281561..282126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585688gene_3874Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585688mRNA_3874-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3874CDS_3874Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3874 ID=mRNA_3874|Name=jgi.p|Nanoce1779_2|585688|organism=Nannochloropsis oceanica|type=mRNA|length=566bp
CATCAAGGAATAAAATTCTTCAACAGAGAAATTGAAGCAGACAGTGCGCC
CTCCCTCCCTCCCTCTCCCTCCCTGCTCCGGTTCTTGGTACTCGACGCGG
ATGCGGCCAGTGTTAGCTGAGACAGAAAACGACAGGTTTAGGTCTCCTCC
TCTTTCCCTCCTTCCGGCTTCATCCTCAGCACTCCTGCAGCTGCTGCTGC
AGCTATTGCTGCTGCTGTCTCTACCGCGTTTTGCTGCCGCCACCGACTTC
AATTTCTTCCACACTGACTTCCCTTCCTCCCCTTTATTCTCTCCCCCCTC
CCTCCCCCACTTCCTTCGATTATTGTACAACTCATGCTTGGGAGCATTGG
GGCCGAAGCCACGATGAGTTTCTAGCTCTCTCTTCTTCTTCGTTTTCCTT
TTAATCTCCCTCCCTTCCTCGGTCTCCTTCTCCCCCTCTTCCGAAAAATT
CTCTTTCTGCTGCTGGTGGTACTGCTGCTGAGTAGACTTGTCTTCATTCT
CTTTCTCCTGCGAAGTCTGCTTTTGCTGCTTTTCCGTTATCACTCCCTCC
CTCCCTTCCTCCCCCT
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protein sequence of jgi.p|Nanoce1779_2|585688

>mRNA_3874-protein ID=mRNA_3874-protein|Name=jgi.p|Nanoce1779_2|585688|organism=Nannochloropsis oceanica|type=polypeptide|length=89bp
MRPVLAETENDRFRSPPLSLLPASSSALLQLLLQLLLLLSLPRFAAATDF
NFFHTDFPSSPLFSPPSLPHFLRLLYNSCLGALGPKPR*
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mRNA from alignment at scaffold_8:281561..282126+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3874 ID=mRNA_3874|Name=jgi.p|Nanoce1779_2|585688|organism=Nannochloropsis oceanica|type=mRNA|length=566bp|location=Sequence derived from alignment at scaffold_8:281561..282126+ (Nannochloropsis oceanica)
CATCAAGGAATAAAATTCTTCAACAGAGAAATTGAAGCAGACAGTGCGCC
CTCCCTCCCTCCCTCTCCCTCCCTGCTCCGGTTCTTGGTACTCGACGCGG
ATGCGGCCAGTGTTAGCTGAGACAGAAAACGACAGGTTTAGGTCTCCTCC
TCTTTCCCTCCTTCCGGCTTCATCCTCAGCACTCCTGCAGCTGCTGCTGC
AGCTATTGCTGCTGCTGTCTCTACCGCGTTTTGCTGCCGCCACCGACTTC
AATTTCTTCCACACTGACTTCCCTTCCTCCCCTTTATTCTCTCCCCCCTC
CCTCCCCCACTTCCTTCGATTATTGTACAACTCATGCTTGGGAGCATTGG
GGCCGAAGCCACGATGAGTTTCTAGCTCTCTCTTCTTCTTCGTTTTCCTT
TTAATCTCCCTCCCTTCCTCGGTCTCCTTCTCCCCCTCTTCCGAAAAATT
CTCTTTCTGCTGCTGGTGGTACTGCTGCTGAGTAGACTTGTCTTCATTCT
CTTTCTCCTGCGAAGTCTGCTTTTGCTGCTTTTCCGTTATCACTCCCTCC
CTCCCTTCCTCCCCCT
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Coding sequence (CDS) from alignment at scaffold_8:281561..282126+

>mRNA_3874 ID=mRNA_3874|Name=jgi.p|Nanoce1779_2|585688|organism=Nannochloropsis oceanica|type=CDS|length=267bp|location=Sequence derived from alignment at scaffold_8:281561..282126+ (Nannochloropsis oceanica)
ATGCGGCCAGTGTTAGCTGAGACAGAAAACGACAGGTTTAGGTCTCCTCC
TCTTTCCCTCCTTCCGGCTTCATCCTCAGCACTCCTGCAGCTGCTGCTGC
AGCTATTGCTGCTGCTGTCTCTACCGCGTTTTGCTGCCGCCACCGACTTC
AATTTCTTCCACACTGACTTCCCTTCCTCCCCTTTATTCTCTCCCCCCTC
CCTCCCCCACTTCCTTCGATTATTGTACAACTCATGCTTGGGAGCATTGG
GGCCGAAGCCACGATGA
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Synonyms
Publications