jgi.p|Nanoce1779_2|586653, mRNA_4132 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|586653
Unique NamemRNA_4132
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1264
Alignment locationscaffold_8:907160..908423 -

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Properties
Property NameValue
TranscriptId586739
TrackFilteredModels2
ProteinId586653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:907160..908423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586653gene_4132Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|586653mRNA_4132-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4132CDS_4132Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4132 ID=mRNA_4132|Name=jgi.p|Nanoce1779_2|586653|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp
ACAGTGCGCCAACCATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAG
GGAATATGCATGGGTGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTA
CCAAATCCTCCTCCTCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGG
GCGGGGCCATTGTCATCACCGGCGCCAGCACTGGGATTGGCAACCACGCC
GCGCAGCACCTGGCCAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAA
ACCCGCCGATGCCACTGCCCTCGAAGCTTTAGGTCTCAAGAATCTTCGAC
CCATAATCATGGACATGGCCAGCCCCTCCACAATCGATGCCGGCACCAAA
CAAATCCTTACCGAGCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGT
AAACAACGCAGGGATCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCC
CCGCGCTTCGGAGCATGTTCGATGTTCATGTCCATGGCCCCCTCGAGTTG
ACCCAGCGCCTCCTCCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAA
TCTGTCGTCGATCACAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATG
GCGCGAGCAAATTGGCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAG
CTCTCTCCATTCGGGTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAA
CACTGCCATCTTCGGCAAAGTCACTGAGAGCATAAATACACACGTGGAGG
CCTCTGAAGAAATCATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAG
CGACGCAAGGACCTGAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGAC
GACGGAGGCGATCACTCATGCCTTGACGGCGCCCTACCCCAAAACAAGAT
ATATTGTGGCAAATGTGAGTGGGATTTCGGCATTTTGGTTGGGGTGGCTG
GTGTGGTTTTGTCCCGATCGGCTTGCTGACTTTATCATGACATTCTTCAG
TTAGAGGAGGGAGGGGACGAGAGGGACAGGGAGGTTATGTCGTGGCAAAT
GCAGCAGCCGCAGCGGCAACATCAGCAGCAGCAGCAGCTTTAGGAGTAGC
AGCAGCAGCAGAGTTGGGATCTCCTCCGATCTACAGGCAGAAATGGAGAA
CAGGAACAACCAATCTTCCATCCCCCAAAACGAAGCAGCAGCAAAAAAAG
GATGTGTATAGAGGAATCAAGTGAAATCACACACACATACACGGAGGGAC
ACACACTCTAAGAA
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protein sequence of jgi.p|Nanoce1779_2|586653

>mRNA_4132-protein ID=mRNA_4132-protein|Name=jgi.p|Nanoce1779_2|586653|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MASAPLSPELLQGICMGVVFTVVLAFFFYQILLLAFRKRFPIPAKGGAIV
ITGASTGIGNHAAQHLAKQGYIVYCTVRKPADATALEALGLKNLRPIIMD
MASPSTIDAGTKQILTELASSQTPLVGLVNNAGIAQKFPLEFHPLPALRS
MFDVHVHGPLELTQRLLPALRANKGRIVNLSSITALVVLPTGAAYGASKL
ALEGISDGLRRELSPFGCSVSIVQPAFVNTAIFGKVTESINTHVEASEEI
MSVYGYFFRPDKRRKDLKQVKKASPPSVTTEAITHALTAPYPKTRYIVAN
VSGISAFWLGWLVWFCPDRLADFIMTFFS*
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mRNA from alignment at scaffold_8:907160..908423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4132 ID=mRNA_4132|Name=jgi.p|Nanoce1779_2|586653|organism=Nannochloropsis oceanica|type=mRNA|length=1264bp|location=Sequence derived from alignment at scaffold_8:907160..908423- (Nannochloropsis oceanica)
ACAGTGCGCCAACCATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAG
GGAATATGCATGGGTGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTA
CCAAATCCTCCTCCTCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGG
GCGGGGCCATTGTCATCACCGGCGCCAGCACTGGGATTGGCAACCACGCC
GCGCAGCACCTGGCCAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAA
ACCCGCCGATGCCACTGCCCTCGAAGCTTTAGGTCTCAAGAATCTTCGAC
CCATAATCATGGACATGGCCAGCCCCTCCACAATCGATGCCGGCACCAAA
CAAATCCTTACCGAGCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGT
AAACAACGCAGGGATCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCC
CCGCGCTTCGGAGCATGTTCGATGTTCATGTCCATGGCCCCCTCGAGTTG
ACCCAGCGCCTCCTCCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAA
TCTGTCGTCGATCACAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATG
GCGCGAGCAAATTGGCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAG
CTCTCTCCATTCGGGTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAA
CACTGCCATCTTCGGCAAAGTCACTGAGAGCATAAATACACACGTGGAGG
CCTCTGAAGAAATCATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAG
CGACGCAAGGACCTGAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGAC
GACGGAGGCGATCACTCATGCCTTGACGGCGCCCTACCCCAAAACAAGAT
ATATTGTGGCAAATGTGAGTGGGATTTCGGCATTTTGGTTGGGGTGGCTG
GTGTGGTTTTGTCCCGATCGGCTTGCTGACTTTATCATGACATTCTTCAG
TTAGAGGAGGGAGGGGACGAGAGGGACAGGGAGGTTATGTCGTGGCAAAT
GCAGCAGCCGCAGCGGCAACATCAGCAGCAGCAGCAGCTTTAGGAGTAGC
AGCAGCAGCAGAGTTGGGATCTCCTCCGATCTACAGGCAGAAATGGAGAA
CAGGAACAACCAATCTTCCATCCCCCAAAACGAAGCAGCAGCAAAAAAAG
GATGTGTATAGAGGAATCAAGTGAAATCACACACACATACACGGAGGGAC
ACACACTCTAAGAA
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Coding sequence (CDS) from alignment at scaffold_8:907160..908423-

>mRNA_4132 ID=mRNA_4132|Name=jgi.p|Nanoce1779_2|586653|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_8:907160..908423- (Nannochloropsis oceanica)
ATGGCATCAGCACCTCTGTCTCCAGAGCTCCTCCAGGGAATATGCATGGG
TGTTGTCTTCACCGTAGTCCTTGCCTTTTTCTTTTACCAAATCCTCCTCC
TCGCATTTCGCAAACGCTTCCCCATCCCGGCCAAGGGCGGGGCCATTGTC
ATCACCGGCGCCAGCACTGGGATTGGCAACCACGCCGCGCAGCACCTGGC
CAAGCAAGGTTACATCGTCTACTGCACTGTGCGTAAACCCGCCGATGCCA
CTGCCCTCGAAGCTTTAGGTCTCAAGAATCTTCGACCCATAATCATGGAC
ATGGCCAGCCCCTCCACAATCGATGCCGGCACCAAACAAATCCTTACCGA
GCTTGCCTCCTCTCAAACCCCGCTCGTCGGCCTTGTAAACAACGCAGGGA
TCGCTCAGAAATTCCCACTCGAATTCCACCCCCTCCCCGCGCTTCGGAGC
ATGTTCGATGTTCATGTCCATGGCCCCCTCGAGTTGACCCAGCGCCTCCT
CCCTGCCCTGCGCGCCAACAAAGGCCGTATTGTCAATCTGTCGTCGATCA
CAGCCCTCGTCGTCTTGCCTACCGGAGCGGCGTATGGCGCGAGCAAATTG
GCATTGGAAGGGATAAGTGACGGGCTTCGACGAGAGCTCTCTCCATTCGG
GTGTTCGGTTTCTATCGTCCAACCGGCCTTCGTCAACACTGCCATCTTCG
GCAAAGTCACTGAGAGCATAAATACACACGTGGAGGCCTCTGAAGAAATC
ATGTCGGTGTACGGGTACTTCTTTCGCCCCGACAAGCGACGCAAGGACCT
GAAGCAGGTCAAGAAGGCGAGCCCGCCCAGTGTGACGACGGAGGCGATCA
CTCATGCCTTGACGGCGCCCTACCCCAAAACAAGATATATTGTGGCAAAT
GTGAGTGGGATTTCGGCATTTTGGTTGGGGTGGCTGGTGTGGTTTTGTCC
CGATCGGCTTGCTGACTTTATCATGACATTCTTCAGTTAG
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Synonyms
Publications