jgi.p|Nanoce1779_2|587037, mRNA_4578 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587037
Unique NamemRNA_4578
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1185
Alignment locationscaffold_9:57669..58853 +

Link to JBrowse

Properties
Property NameValue
TranscriptId587123
TrackFilteredModels2
ProteinId587037
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:57669..58853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587037gene_4578Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587037mRNA_4578-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4578CDS_4578Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4578 ID=mRNA_4578|Name=jgi.p|Nanoce1779_2|587037|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp
TTCGAATACTGCTCGATCAACGGGAATGAATCGACTCCTTTTTTCTTCAA
CTGGAATACAGCGACCAACGAGTGCTTTTGCTGCGGCGGAGAATGTACTT
TGATTCTTGATCCTGATTTCGATGCCTTCAAGGTGGTCGTGGCTGCCTCA
GCATCTCCTACGAGTAGTCCTTCGGCTTCGCCCTCAGCCTCCCCGTCTAG
CAGCCCGACAGGTAGCCCAAGTGTAGCCCCATCGTCCTCCCCGAGTGGCT
CTCCCTCGAATAGTCCCTCGGTGTCGCCATCAGCCTCCCCGTCCGCGTCG
CCTAGCAGTAGTCCGACAAACAGTCCAAGTGCAGCCCCATCGTCCGCTCC
TACGCCTGCCCCCATCTGTTTCAACAAGGAGGCTCGCGTGGTCATGGCGG
ACAGCTCGCTCAAACCCGTCCATGCACTTCATACAGGCGATCTCGTATCA
GTTGATCCGCACAACCTTCATATTCACGCCAAAGTGCTCGCTCTTGTTGA
GGCTCCAGTAAACACAAATGGTGGTAGCATAATGGGTCACATGTGTGAGC
TTGCTCCTGGATTCTTCCTCAGTCACATGCATCCTCTCCTCATAAATGGG
ACCCGCTGGATCCGTCCCCAAGAGGAATTTGACTGCGTAACTGAGAGGAC
ATTTCCGAGCCTCTGGAATATCATTTTGGAAGAGGGACCTTACCACACAG
TCAACATCGAGGGATTTGCAGTTGCTACATGGGTCAAGTACCCCGTTGGC
GTGCCCATGATTGATCGACCCTACAAGCTGGAAATGTACCGTATTGTGGA
ACAAAGCCCCGGGTTTGCTACCGGACATGTAGTGATTGACACGCGGAAGA
TGCTCAAACTCAAGACTGATTGGCAGAATGAAAACCCGCACGCCGTCGCA
GCCGATGCCTCCTTTCTGATGCCGATATCATCTGTGCATTCCTCCCGCAT
GGAGCTTTAGGATTACTTTTCAGGAGAGAGAAGGGATCATGTACTTTTGG
AAGTTTTTATTTAAGCACAAATAGGCTCAGTCGAGGAAAGTCGCCAAAGA
AGATTGGCCAATGCCCTATTCTCTGCATCGATTCGGGGACACATCTCATA
ATTTGTCGGTTTCGGGAAAGTTTAAGTCACTACTACAGTATCAAGAAAGA
AAGGGGAAAGAACAAGCGAGAAAGTCGTTTGCGTA
back to top

protein sequence of jgi.p|Nanoce1779_2|587037

>mRNA_4578-protein ID=mRNA_4578-protein|Name=jgi.p|Nanoce1779_2|587037|organism=Nannochloropsis oceanica|type=polypeptide|length=189bp
MADSSLKPVHALHTGDLVSVDPHNLHIHAKVLALVEAPVNTNGGSIMGHM
CELAPGFFLSHMHPLLINGTRWIRPQEEFDCVTERTFPSLWNIILEEGPY
HTVNIEGFAVATWVKYPVGVPMIDRPYKLEMYRIVEQSPGFATGHVVIDT
RKMLKLKTDWQNENPHAVAADASFLMPISSVHSSRMEL*
back to top

mRNA from alignment at scaffold_9:57669..58853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4578 ID=mRNA_4578|Name=jgi.p|Nanoce1779_2|587037|organism=Nannochloropsis oceanica|type=mRNA|length=1185bp|location=Sequence derived from alignment at scaffold_9:57669..58853+ (Nannochloropsis oceanica)
TTCGAATACTGCTCGATCAACGGGAATGAATCGACTCCTTTTTTCTTCAA
CTGGAATACAGCGACCAACGAGTGCTTTTGCTGCGGCGGAGAATGTACTT
TGATTCTTGATCCTGATTTCGATGCCTTCAAGGTGGTCGTGGCTGCCTCA
GCATCTCCTACGAGTAGTCCTTCGGCTTCGCCCTCAGCCTCCCCGTCTAG
CAGCCCGACAGGTAGCCCAAGTGTAGCCCCATCGTCCTCCCCGAGTGGCT
CTCCCTCGAATAGTCCCTCGGTGTCGCCATCAGCCTCCCCGTCCGCGTCG
CCTAGCAGTAGTCCGACAAACAGTCCAAGTGCAGCCCCATCGTCCGCTCC
TACGCCTGCCCCCATCTGTTTCAACAAGGAGGCTCGCGTGGTCATGGCGG
ACAGCTCGCTCAAACCCGTCCATGCACTTCATACAGGCGATCTCGTATCA
GTTGATCCGCACAACCTTCATATTCACGCCAAAGTGCTCGCTCTTGTTGA
GGCTCCAGTAAACACAAATGGTGGTAGCATAATGGGTCACATGTGTGAGC
TTGCTCCTGGATTCTTCCTCAGTCACATGCATCCTCTCCTCATAAATGGG
ACCCGCTGGATCCGTCCCCAAGAGGAATTTGACTGCGTAACTGAGAGGAC
ATTTCCGAGCCTCTGGAATATCATTTTGGAAGAGGGACCTTACCACACAG
TCAACATCGAGGGATTTGCAGTTGCTACATGGGTCAAGTACCCCGTTGGC
GTGCCCATGATTGATCGACCCTACAAGCTGGAAATGTACCGTATTGTGGA
ACAAAGCCCCGGGTTTGCTACCGGACATGTAGTGATTGACACGCGGAAGA
TGCTCAAACTCAAGACTGATTGGCAGAATGAAAACCCGCACGCCGTCGCA
GCCGATGCCTCCTTTCTGATGCCGATATCATCTGTGCATTCCTCCCGCAT
GGAGCTTTAGGATTACTTTTCAGGAGAGAGAAGGGATCATGTACTTTTGG
AAGTTTTTATTTAAGCACAAATAGGCTCAGTCGAGGAAAGTCGCCAAAGA
AGATTGGCCAATGCCCTATTCTCTGCATCGATTCGGGGACACATCTCATA
ATTTGTCGGTTTCGGGAAAGTTTAAGTCACTACTACAGTATCAAGAAAGA
AAGGGGAAAGAACAAGCGAGAAAGTCGTTTGCGTA
back to top

Coding sequence (CDS) from alignment at scaffold_9:57669..58853+

>mRNA_4578 ID=mRNA_4578|Name=jgi.p|Nanoce1779_2|587037|organism=Nannochloropsis oceanica|type=CDS|length=567bp|location=Sequence derived from alignment at scaffold_9:57669..58853+ (Nannochloropsis oceanica)
ATGGCGGACAGCTCGCTCAAACCCGTCCATGCACTTCATACAGGCGATCT
CGTATCAGTTGATCCGCACAACCTTCATATTCACGCCAAAGTGCTCGCTC
TTGTTGAGGCTCCAGTAAACACAAATGGTGGTAGCATAATGGGTCACATG
TGTGAGCTTGCTCCTGGATTCTTCCTCAGTCACATGCATCCTCTCCTCAT
AAATGGGACCCGCTGGATCCGTCCCCAAGAGGAATTTGACTGCGTAACTG
AGAGGACATTTCCGAGCCTCTGGAATATCATTTTGGAAGAGGGACCTTAC
CACACAGTCAACATCGAGGGATTTGCAGTTGCTACATGGGTCAAGTACCC
CGTTGGCGTGCCCATGATTGATCGACCCTACAAGCTGGAAATGTACCGTA
TTGTGGAACAAAGCCCCGGGTTTGCTACCGGACATGTAGTGATTGACACG
CGGAAGATGCTCAAACTCAAGACTGATTGGCAGAATGAAAACCCGCACGC
CGTCGCAGCCGATGCCTCCTTTCTGATGCCGATATCATCTGTGCATTCCT
CCCGCATGGAGCTTTAG
back to top
Synonyms
Publications