jgi.p|Nanoce1779_2|571372, mRNA_1220 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571372
Unique Name	mRNA_1220
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1400
Alignment location	scaffold_1:7311..9191 +

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Properties


Property Name	Value
TranscriptId	571458
Track	FilteredModels2
ProteinId	571372

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:7311..9191 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571372	gene_1220	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571372	mRNA_1220-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1220	CDS_1220	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:7311..9191+
coding sequence from alignment at scaffold_1:7311..9191+

mRNA sequence

>mRNA_1220 ID=mRNA_1220|Name=jgi.p|Nanoce1779_2|571372|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
CAGGGAGCGAAAGAGCTGTCTGGGTCCGCAACGCTCGGTCGAGCGCACTT
CATCGTCTTGTTCACGTCGCCTTTCATCGACAGGGAAGCGCCTTGCAAAG
GTGGCTTGTAAGGCCGGCCAGGCCCGCCTCTCGGAGTTTGGCACATGTCA
GTCTGTACCGGGTCTTGCACGTGTTTGGGGCGAGTATTTGCTCCTGCAGC
CTAGCATCTATGATTGGTGCGTTCTGATAGTGACCGTGGAGCGGTTGTGG
TACCTGTGCCCGATTTCATATACATCCACCAACCTCCTCCCGCCCATGCC
CCAGGGGAAGCGCTCACCCAGCGTGTGTCTCTTCCTACCCAAGCCTCCCT
TATCATCTCTCTACTTGCCCTCAAGTCGGGTTTAATTGTGAATGTGGGAA
ACTTTGTTGGTGGGGGGGATGCCAGCAGCTCTTTCGCATCTCACCTCTCC
TCCCCCCTTCCCTTTCTCCGTCTCTCTCCTTCCCTCCCTTTCTTCCCCCA
GATGGACCCCGGCATGGATATGGGTGGCATGGATGGTATGGATATGGGCG
AGGGAAATGGATACTGCCTGGGCGACGGGATGGTGATGAATAATGGTTTC
AGCTTCATGACAAAAGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGC
CGTTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCT
TCCTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGT
CTTCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGG
AGGAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTT
TGGAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATG
CTCCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGG
CTTGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGAGTGG
CGAAAGGAAAGGATGAACCCAGCGCAATGATTGCGGTGGGTGGGGGCTGT
GGGTGCGGGGAGGAGGTGATTCACGTAGCTGCTGCCGTAGGTGAGAATGG
AGGTGCCAAAGGAGGAGCGGACGATCCCGCGAGCTCGAATAATAAGGTGT
AGGAGGAAGGGAGGGGTCAAGAGGTGGGAAAACATGGCTGGATCTGGGCG
CACTATTTAGAAACTGCAGCTGCCTTTGCTGATATTGCAGCTGCCGCTGC
TGCTGCTGGCCCTCCCTGGTGGGGAAGGGGGGAGGCTGGAAGATAGGAGG
AGAGGGGGGGAAATTTAAAGAACCCTTGAGAATGGGAAAGACAGGTCACA
ATGGAATACAATGTATGTGAAGAGAAAAGGACAATTGATTGACGAAGAAA

protein sequence of jgi.p|Nanoce1779_2|571372

>mRNA_1220-protein ID=mRNA_1220-protein|Name=jgi.p|Nanoce1779_2|571372|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MDPGMDMGGMDGMDMGEGNGYCLGDGMVMNNGFSFMTKGGSCILYLFQGA
VVNTAGKYAAAIIGTFFLAFSVEALRHFRFWMRLRRARQTTAAVLAAKEG
GEEKVRGVRAQVLPILLEAFLFGSHMFIAYLVMLLVMLYEWAIFISLVLG
LAAGYFTMEMWEAYRVAKGKDEPSAMIAVGGGCGCGEEVIHVAAAVGENG
GAKGGADDPASSNNKV*

mRNA from alignment at scaffold_1:7311..9191+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1220 ID=mRNA_1220|Name=jgi.p|Nanoce1779_2|571372|organism=Nannochloropsis oceanica|type=mRNA|length=1881bp|location=Sequence derived from alignment at scaffold_1:7311..9191+ (Nannochloropsis oceanica)
CAGGGAGCGAAAGAGCTGTCTGGGTCCGCAACGCTCGGTCGAGCGCACTT
CATCGTCTTGTTCACGTCGCCTTTCATCGACAGGGAAGCGCCTTGCAAAG
GTAAGAAGGGAAATTCCTTTCCTCTCCTCTTGCAGCACTTACTCTCTTGT
CCGCCAAGCGGGTGTACAAGGAGAATATCAACTACTTCAGTGTGATCGAT
GACTTGACCCTCATTAGCTTTCACCCTTGATGAGGTGGCTTGTAAGGCCG
GCCAGGCCCGCCTCTCGGAGTTTGGCACATGTCAGTCTGTACCGGGTCTT
GCACGTGTTTGGGGCGAGTATTTGCTCCTGCAGCCTAGCATCTATGATTG
GTGCGTTCTGATAGTGACCGTGGAGCGGTTGTGGTACCTGTGCCCGATTT
CATATACATCCACCAACCTCCTCCCGCCCATGCCCCAGGGGAAGCGCTCA
CCCAGCGTGTGTCTCTTCCTACCCAAGCCTCCCTTATCATCTCTCTACTT
GCCCTCAAGTCGGGTTTAATTGTGAATGTGGGAAACTTTGTTGGTGGGGG
GGATGCCAGCAGCTCTTTCGCATCTCACCTCTCCTCCCCCCTTCCCTTTC
TCCGTCTCTCTCCTTCCCTCCCTTTCTTCCCCCAGATGGACCCCGGCATG
GATATGGGTGGCATGGATGGTATGGATATGGGCGAGGGAAATGGATACTG
CCTGGGCGACGGGATGGTGATGAATAATGGTTTCAGCTTCATGACAAAAG
TGAGCGAAGAGGGGAGGAAAGGAGTGAGGGAGAGTGGGAAGGAATGAGAA
GGAGCCAGATGTGGGTATGCGGGTATTCCATGTATCAAAGAAAAGGCGTA
GGTATCATCGCTGCTCATTTTCAAGTATTCAAGGCTTCTCTTTGCATTGC
TCCGTATTCTTCCCTTTCCTCCTCCTCACTTTCCCCTCCCCCCTTCTCAC
TTTCCCCACCCTCTCCTTTAGGGCGGTTCCTGCATCCTGTACCTGTTTCA
AGGTGCCGTTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGA
CTTTCTTCCTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGG
ATGCGTCTTCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAA
GGAGGGAGGAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCA
TTCTTTTGGAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTG
GTCATGCTCCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGT
CTTGGGCTTGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACA
GGTGAGGAGAGGGAAGGAGGGAGGGTGGGTTGGCGGGAGGGAGGGAGGGC
GGTTTCAATCCCTTAGCATTGACTCATGCACTTTCAATTATTGTCATTGT
CGCTATTATCTTCGAAATTGTAATAGAGTGGCGAAAGGAAAGGATGAACC
CAGCGCAATGATTGCGGTGGGTGGGGGCTGTGGGTGCGGGGAGGAGGTGA
TTCACGTAGCTGCTGCCGTAGGTGAGAATGGAGGTGCCAAAGGAGGAGCG
GACGATCCCGCGAGCTCGAATAATAAGGTGTAGGAGGAAGGGAGGGGTCA
AGAGGTGGGAAAACATGGCTGGATCTGGGCGCACTATTTAGAAACTGCAG
CTGCCTTTGCTGATATTGCAGCTGCCGCTGCTGCTGCTGGCCCTCCCTGG
TGGGGAAGGGGGGAGGCTGGAAGATAGGAGGAGAGGGGGGGAAATTTAAA
GAACCCTTGAGAATGGGAAAGACAGGTCACAATGGAATACAATGTATGTG
AAGAGAAAAGGACAATTGATTGACGAAGAAA

Coding sequence (CDS) from alignment at scaffold_1:7311..9191+

>mRNA_1220 ID=mRNA_1220|Name=jgi.p|Nanoce1779_2|571372|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_1:7311..9191+ (Nannochloropsis oceanica)
ATGGACCCCGGCATGGATATGGGTGGCATGGATGGTATGGATATGGGCGA
GGGAAATGGATACTGCCTGGGCGACGGGATGGTGATGAATAATGGTTTCA
GCTTCATGACAAAAGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGCC
GTTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCTT
CCTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGTC
TTCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGGA
GGAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTTT
GGAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATGC
TCCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGGC
TTGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGAGTGGC
GAAAGGAAAGGATGAACCCAGCGCAATGATTGCGGTGGGTGGGGGCTGTG
GGTGCGGGGAGGAGGTGATTCACGTAGCTGCTGCCGTAGGTGAGAATGGA
GGTGCCAAAGGAGGAGCGGACGATCCCGCGAGCTCGAATAATAAGGTGTA
GATGGACCCCGGCATGGATATGGGTGGCATGGATGGTATGGATATGGGCG
AGGGAAATGGATACTGCCTGGGCGACGGGATGGTGATGAATAATGGTTTC
AGCTTCATGACAAAAGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTGC
CGTTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTCT
TCCTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCGT
CTTCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGGG
AGGAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTTT
TGGAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCATG
CTCCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGGG
CTTGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGAGTGG
CGAAAGGAAAGGATGAACCCAGCGCAATGATTGCGGTGGGTGGGGGCTGT
GGGTGCGGGGAGGAGGTGATTCACGTAGCTGCTGCCGTAGGTGAGAATGG
AGGTGCCAAAGGAGGAGCGGACGATCCCGCGAGCTCGAATAATAAGGTGT
AGATGGACCCCGGCATGGATATGGGTGGCATGGATGGTATGGATATGGGC
GAGGGAAATGGATACTGCCTGGGCGACGGGATGGTGATGAATAATGGTTT
CAGCTTCATGACAAAAGGCGGTTCCTGCATCCTGTACCTGTTTCAAGGTG
CCGTTGTCAACACTGCGGGCAAGTATGCTGCTGCCATCATCGGGACTTTC
TTCCTCGCTTTTTCCGTGGAGGCCTTGCGTCACTTCCGATTTTGGATGCG
TCTTCGCCGGGCGCGTCAGACGACAGCGGCTGTTTTGGCGGCGAAGGAGG
GAGGAGAGGAAAAAGTAAGGGGTGTGCGCGCACAGGTGCTCCCCATTCTT
TTGGAAGCCTTCTTGTTTGGCTCGCACATGTTCATCGCCTACTTGGTCAT
GCTCCTGGTGATGCTGTATGAGTGGGCTATTTTCATTTCGTTGGTCTTGG
GCTTGGCGGCCGGGTATTTCACCATGGAGATGTGGGAGGCGTACAGAGTG
GCGAAAGGAAAGGATGAACCCAGCGCAATGATTGCGGTGGGTGGGGGCTG
TGGGTGCGGGGAGGAGGTGATTCACGTAGCTGCTGCCGTAGGTGAGAATG
GAGGTGCCAAAGGAGGAGCGGACGATCCCGCGAGCTCGAATAATAAGGTG
TAG

Synonyms

Publications