jgi.p|Nanoce1779_2|571862, mRNA_1360 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571862
Unique Name	mRNA_1360
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2113
Alignment location	scaffold_1:381844..383956 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571948
Track	FilteredModels2
ProteinId	571862

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:381844..383956 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571862	gene_1360	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571862	mRNA_1360-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1360	CDS_1360	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:381844..383956+
coding sequence from alignment at scaffold_1:381844..383956+

mRNA sequence

>mRNA_1360 ID=mRNA_1360|Name=jgi.p|Nanoce1779_2|571862|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp
ACAGGAACACACTAAGCGAGCACCCAAGGATGCTGGCATCACGCACATTG
CTCCGAGGAGGCAGCAGGAGCAGGCTCACGACCAGTAGCCAGAGCATCAT
GGCGCCCGCTAGTCGTACCTTTGCGGCCGCCGCTGCGGAGTCCCAGTATG
AATTAGTCGTGGTAGGAGGTGGACCCGGGGGCTACGTCGCCGCCATTAAA
GCCGCACAACTGGGTATGAAGACAGCGTGTGTTGAGGTCCGTGGTGCGTT
GGGCGGAACGTGCTTGAACGTGGGATGCATCCCGTCCAAGGCGTTGCTGC
ACTCGTCGCATCTCTTTGATCAGGCCAACCATGACTTCAAGAAGCATGGA
ATCAAGATTAATGGCACGATAGAGGTGGACCTCAAGACAATGATGGGGGG
TAAGGAGAAGGCGGTCCGTCAACTCACGGGGGGCATCGAGTATTTGTTCA
AGAAGAACGGGGTGGATTACGTGAAGGGGTTTGGAAAAGTCGCGGGGCCT
AACAGTGTGCATGTCAAGCTGAACGATGGTGGGGAGAGCACGCTCGAGAC
CAAGAACATACTGATTGCCACGGGCTCCGAGGTCACGCCGTTACCGACCT
GCCCGGTGGAGAATGAAAAGGGCCGCATAGTCGATTCCACAGGGGCGCTG
GTGTTGAAAACGGTCCCCAAGACCATGGTGGTGGTGGGTGGTGGGGTGAT
CGGCCTCGAAATGGGCTCGGTGTGGCGTCGCCTTGGCACGAAGGTGACGG
TCGTCGAGTTTCTGGACCGAATCTGTCCTTCCCTCGACAATGAAATCGGA
CAGTCTTTCCAGAAGATTTTGGCGAAACAAGGGATTAACTTCAAAATGAG
CACTAAAGTGACGGGTGCTACAGTGAAGGATGATGGGGTCTCTCTCACCC
TCGAGCCTGCTGCCGGTGGGGCTGCCGAGACATTCGAAGCCGAGGTGGTG
CTTGTGGCGATTGGTCGTCGGCCGTTCACCCGGAACATGGGGTTGGAGGA
GCAGGGCATCGAGCTAGATAAGGCAGGGAGGATCACGGTCGACAGTCATT
TTAAAACTGTCATCCCGTCAATCCATGCCATTGGAGACGCCATCGTCGGG
CCAATGCTGGCGCACAAGGCGGAGGAGGAGGGGATTGCGGTCGTGGAGAT
GATGAAGGGCCTCGCAGGCCATGTGAATTACGATGCGATCCCCGGGGTGA
TCTACACGCATCCCGAGGTTGCGGCTGCGGGGAAGACGGAGGAGGAATTG
AAGGCGCAGGGCGTGGCGTACAACAAAGGGGTGTTTCCTTTCAGTGCGAA
TTCTCGGGCGAGAGCCGTGGGAGAGAGTGATGGGATGGTGAAGATTCTGA
GCGATAAAACAACGGATCGGATTTTGGGAATTCATATTATTGGGTCCAAT
GCGGGGGAAATGATTGCGGAGGGAGTGTTGGGGATGGAGTATGGAGCGTC
GAGTGAGGACATTGCACGCACGTGCCATGCGCATCCGACCTTGTCGGAGG
CGTTCAAGGAGGCGTGCATGGCCACGAGCTCTAAGGCAATCCACTTTTAA
GGAGAGGGGATATGCGAGGAGTAGTGGCATGTAAACAGGCGAGAGAGGTG
TAGGGGATATACGAGGAGGAGAAGGGGGTTGAGGAGGTCAGTAGGCAGAA
GTAGGAAGGGAGGATAGGAATATAAGGGGTTTCACGAGGGAAGGCAGATG
TGTACCTGGAGCGAAAGAACGAGAAGAAATTTAGCGAAAACAGTTAAAAC
ACAGTTGTCTCACCTGCTCGCCTTCTTGCCCTTTCCGCCTTCTTGTTGGA
TGACACGGAACAAAGGTTTTATACAGATTATTTTGCGGAGGGGGAAGAAA
CATAAGAAAAAAGAGAGAACTCTCGCAACCCACCGCATGGGGTAACTCGA
AAAAATGGGAGGAGAAGAAAACTACGCGAACGAGCAAGTACGAGTAATAT
ACTGGACCAGCGCTTACTTTGTGAGAGTGTGTCCGCCTAGGGTGATTTTG
CGGATTATCGGAGGAATAAAAGTTTGGCAGGAAAAAGGGGAGAAGATTAG
CTTTTCCCTGTTTCTTTTCAAGTGTGTGGAGGACGCGCGGCGGGGTCTGC
TTTGGATGCGGGG

protein sequence of jgi.p|Nanoce1779_2|571862

>mRNA_1360-protein ID=mRNA_1360-protein|Name=jgi.p|Nanoce1779_2|571862|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MLASRTLLRGGSRSRLTTSSQSIMAPASRTFAAAAAESQYELVVVGGGPG
GYVAAIKAAQLGMKTACVEVRGALGGTCLNVGCIPSKALLHSSHLFDQAN
HDFKKHGIKINGTIEVDLKTMMGGKEKAVRQLTGGIEYLFKKNGVDYVKG
FGKVAGPNSVHVKLNDGGESTLETKNILIATGSEVTPLPTCPVENEKGRI
VDSTGALVLKTVPKTMVVVGGGVIGLEMGSVWRRLGTKVTVVEFLDRICP
SLDNEIGQSFQKILAKQGINFKMSTKVTGATVKDDGVSLTLEPAAGGAAE
TFEAEVVLVAIGRRPFTRNMGLEEQGIELDKAGRITVDSHFKTVIPSIHA
IGDAIVGPMLAHKAEEEGIAVVEMMKGLAGHVNYDAIPGVIYTHPEVAAA
GKTEEELKAQGVAYNKGVFPFSANSRARAVGESDGMVKILSDKTTDRILG
IHIIGSNAGEMIAEGVLGMEYGASSEDIARTCHAHPTLSEAFKEACMATS
SKAIHF*

mRNA from alignment at scaffold_1:381844..383956+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1360 ID=mRNA_1360|Name=jgi.p|Nanoce1779_2|571862|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp|location=Sequence derived from alignment at scaffold_1:381844..383956+ (Nannochloropsis oceanica)
ACAGGAACACACTAAGCGAGCACCCAAGGATGCTGGCATCACGCACATTG
CTCCGAGGAGGCAGCAGGAGCAGGCTCACGACCAGTAGCCAGAGCATCAT
GGCGCCCGCTAGTCGTACCTTTGCGGCCGCCGCTGCGGAGTCCCAGTATG
AATTAGTCGTGGTAGGAGGTGGACCCGGGGGCTACGTCGCCGCCATTAAA
GCCGCACAACTGGGTATGAAGACAGCGTGTGTTGAGGTCCGTGGTGCGTT
GGGCGGAACGTGCTTGAACGTGGGATGCATCCCGTCCAAGGCGTTGCTGC
ACTCGTCGCATCTCTTTGATCAGGCCAACCATGACTTCAAGAAGCATGGA
ATCAAGATTAATGGCACGATAGAGGTGGACCTCAAGACAATGATGGGGGG
TAAGGAGAAGGCGGTCCGTCAACTCACGGGGGGCATCGAGTATTTGTTCA
AGAAGAACGGGGTGGATTACGTGAAGGGGTTTGGAAAAGTCGCGGGGCCT
AACAGTGTGCATGTCAAGCTGAACGATGGTGGGGAGAGCACGCTCGAGAC
CAAGAACATACTGATTGCCACGGGCTCCGAGGTCACGCCGTTACCGACCT
GCCCGGTGGAGAATGAAAAGGGCCGCATAGTCGATTCCACAGGGGCGCTG
GTGTTGAAAACGGTCCCCAAGACCATGGTGGTGGTGGGTGGTGGGGTGAT
CGGCCTCGAAATGGGCTCGGTGTGGCGTCGCCTTGGCACGAAGGTGACGG
TCGTCGAGTTTCTGGACCGAATCTGTCCTTCCCTCGACAATGAAATCGGA
CAGTCTTTCCAGAAGATTTTGGCGAAACAAGGGATTAACTTCAAAATGAG
CACTAAAGTGACGGGTGCTACAGTGAAGGATGATGGGGTCTCTCTCACCC
TCGAGCCTGCTGCCGGTGGGGCTGCCGAGACATTCGAAGCCGAGGTGGTG
CTTGTGGCGATTGGTCGTCGGCCGTTCACCCGGAACATGGGGTTGGAGGA
GCAGGGCATCGAGCTAGATAAGGCAGGGAGGATCACGGTCGACAGTCATT
TTAAAACTGTCATCCCGTCAATCCATGCCATTGGAGACGCCATCGTCGGG
CCAATGCTGGCGCACAAGGCGGAGGAGGAGGGGATTGCGGTCGTGGAGAT
GATGAAGGGCCTCGCAGGCCATGTGAATTACGATGCGATCCCCGGGGTGA
TCTACACGCATCCCGAGGTTGCGGCTGCGGGGAAGACGGAGGAGGAATTG
AAGGCGCAGGGCGTGGCGTACAACAAAGGGGTGTTTCCTTTCAGTGCGAA
TTCTCGGGCGAGAGCCGTGGGAGAGAGTGATGGGATGGTGAAGATTCTGA
GCGATAAAACAACGGATCGGATTTTGGGAATTCATATTATTGGGTCCAAT
GCGGGGGAAATGATTGCGGAGGGAGTGTTGGGGATGGAGTATGGAGCGTC
GAGTGAGGACATTGCACGCACGTGCCATGCGCATCCGACCTTGTCGGAGG
CGTTCAAGGAGGCGTGCATGGCCACGAGCTCTAAGGCAATCCACTTTTAA
GGAGAGGGGATATGCGAGGAGTAGTGGCATGTAAACAGGCGAGAGAGGTG
TAGGGGATATACGAGGAGGAGAAGGGGGTTGAGGAGGTCAGTAGGCAGAA
GTAGGAAGGGAGGATAGGAATATAAGGGGTTTCACGAGGGAAGGCAGATG
TGTACCTGGAGCGAAAGAACGAGAAGAAATTTAGCGAAAACAGTTAAAAC
ACAGTTGTCTCACCTGCTCGCCTTCTTGCCCTTTCCGCCTTCTTGTTGGA
TGACACGGAACAAAGGTTTTATACAGATTATTTTGCGGAGGGGGAAGAAA
CATAAGAAAAAAGAGAGAACTCTCGCAACCCACCGCATGGGGTAACTCGA
AAAAATGGGAGGAGAAGAAAACTACGCGAACGAGCAAGTACGAGTAATAT
ACTGGACCAGCGCTTACTTTGTGAGAGTGTGTCCGCCTAGGGTGATTTTG
CGGATTATCGGAGGAATAAAAGTTTGGCAGGAAAAAGGGGAGAAGATTAG
CTTTTCCCTGTTTCTTTTCAAGTGTGTGGAGGACGCGCGGCGGGGTCTGC
TTTGGATGCGGGG

Coding sequence (CDS) from alignment at scaffold_1:381844..383956+

>mRNA_1360 ID=mRNA_1360|Name=jgi.p|Nanoce1779_2|571862|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at scaffold_1:381844..383956+ (Nannochloropsis oceanica)
ATGCTGGCATCACGCACATTGCTCCGAGGAGGCAGCAGGAGCAGGCTCAC
GACCAGTAGCCAGAGCATCATGGCGCCCGCTAGTCGTACCTTTGCGGCCG
CCGCTGCGGAGTCCCAGTATGAATTAGTCGTGGTAGGAGGTGGACCCGGG
GGCTACGTCGCCGCCATTAAAGCCGCACAACTGGGTATGAAGACAGCGTG
TGTTGAGGTCCGTGGTGCGTTGGGCGGAACGTGCTTGAACGTGGGATGCA
TCCCGTCCAAGGCGTTGCTGCACTCGTCGCATCTCTTTGATCAGGCCAAC
CATGACTTCAAGAAGCATGGAATCAAGATTAATGGCACGATAGAGGTGGA
CCTCAAGACAATGATGGGGGGTAAGGAGAAGGCGGTCCGTCAACTCACGG
GGGGCATCGAGTATTTGTTCAAGAAGAACGGGGTGGATTACGTGAAGGGG
TTTGGAAAAGTCGCGGGGCCTAACAGTGTGCATGTCAAGCTGAACGATGG
TGGGGAGAGCACGCTCGAGACCAAGAACATACTGATTGCCACGGGCTCCG
AGGTCACGCCGTTACCGACCTGCCCGGTGGAGAATGAAAAGGGCCGCATA
GTCGATTCCACAGGGGCGCTGGTGTTGAAAACGGTCCCCAAGACCATGGT
GGTGGTGGGTGGTGGGGTGATCGGCCTCGAAATGGGCTCGGTGTGGCGTC
GCCTTGGCACGAAGGTGACGGTCGTCGAGTTTCTGGACCGAATCTGTCCT
TCCCTCGACAATGAAATCGGACAGTCTTTCCAGAAGATTTTGGCGAAACA
AGGGATTAACTTCAAAATGAGCACTAAAGTGACGGGTGCTACAGTGAAGG
ATGATGGGGTCTCTCTCACCCTCGAGCCTGCTGCCGGTGGGGCTGCCGAG
ACATTCGAAGCCGAGGTGGTGCTTGTGGCGATTGGTCGTCGGCCGTTCAC
CCGGAACATGGGGTTGGAGGAGCAGGGCATCGAGCTAGATAAGGCAGGGA
GGATCACGGTCGACAGTCATTTTAAAACTGTCATCCCGTCAATCCATGCC
ATTGGAGACGCCATCGTCGGGCCAATGCTGGCGCACAAGGCGGAGGAGGA
GGGGATTGCGGTCGTGGAGATGATGAAGGGCCTCGCAGGCCATGTGAATT
ACGATGCGATCCCCGGGGTGATCTACACGCATCCCGAGGTTGCGGCTGCG
GGGAAGACGGAGGAGGAATTGAAGGCGCAGGGCGTGGCGTACAACAAAGG
GGTGTTTCCTTTCAGTGCGAATTCTCGGGCGAGAGCCGTGGGAGAGAGTG
ATGGGATGGTGAAGATTCTGAGCGATAAAACAACGGATCGGATTTTGGGA
ATTCATATTATTGGGTCCAATGCGGGGGAAATGATTGCGGAGGGAGTGTT
GGGGATGGAGTATGGAGCGTCGAGTGAGGACATTGCACGCACGTGCCATG
CGCATCCGACCTTGTCGGAGGCGTTCAAGGAGGCGTGCATGGCCACGAGC
TCTAAGGCAATCCACTTTTAA

Synonyms

Publications