jgi.p|Nanoce1779_2|573274, mRNA_1737 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|573274
Unique Name	mRNA_1737
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2134
Alignment location	scaffold_1:1364676..1367584 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	573360
Track	FilteredModels2
ProteinId	573274

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1364676..1367584 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573274	gene_1737	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|573274	mRNA_1737-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1737	CDS_1737	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1364676..1367584+
coding sequence from alignment at scaffold_1:1364676..1367584+

mRNA sequence

>mRNA_1737 ID=mRNA_1737|Name=jgi.p|Nanoce1779_2|573274|organism=Nannochloropsis oceanica|type=mRNA|length=2134bp
ACAGGAAGTACAGGTCAGCAACCTTTACTCAGGAATCATGCCCAAGGAGA
TCAAGGACATCCGCGACTTCCTCCAGAAGGCCCGAAGAAAGGATGCCAAG
TCAGTCAAGGTCAAGAAGTCCAGCACCGGCACCAAGTTCAAGATTCGTTG
CAGCCGGTACTTGTACACGCTGTCGGTCTCTGACATTGAGAAGGCCGAAA
AGCTGACCCAGTCCCTGCCCCCTGGGCTCCAGCGCAAGGACATCTAAGTG
AGCAGAAAGATGGCATGATGGCGGGGTAAGTGTTCCTGCGCTCCTTTGCT
GCTGCTGTGTAGGCCTGTGGGAAAAGGACAGGGAAGGGTTGGTGGGTCGG
TGTGTTGTGGATGGAGAGAGCTACAGTGAGGGAGAACGAGAAGGGAAGAG
GAGGTTGGATATAGAGCTTTTCTTCACTTGACCTTTGCTAACTACAGAGC
TGCAGCACGCGAAAGAAACAACAACCCAACCATCAACAGGACTGATCTAC
TGTTGTCGTTCACCAGCTGTGTGCTATCCTATTGCTTGTCGTATTTAGTG
TGTACTTGCTGGCTTAATCGCCCGCAACGGTTCTGGCGATAAATGCGTAC
GTCCGAACGTTCTTCATTTTTTCCTTTCCTCTCCTTTTCCGTGGAGGGAT
ATGCGCGACAAGAAGATTCCAGAAGAAAAAGTGTGTTCCAAAGTATATGA
AGATGTTCTTTTTAAGAGGATCAAGTCAATTAAGTCGTATGCTTTTTTTT
GTATATCTTTATACTTGGGTATGCGGCAACTGTGGGGAAGCTACGTGCAG
GCACCTTTGGCCGGAACTCCTTGTTCGCTTGCATGTATGTCTCGGGCTTC
CCTCTACGCGCTGGTGCTCCCTCACTGTTTTTCCCCTTGCTCTACGTTTA
CATTTTTCAATTACAGCAATATTCAGCTTTCTTCCGACTATCGACGCCAC
CGCCCTCACCGTATCAACACTGGCAGTAACGACGAAACAACAGCCAGCGA
AATGACCACCAACATTCAGCAGACAATGGGGCAGATGGGGCAGTTCGTGG
AACGTGGTGTGAAGCAACTGGTACCCTCAGAAATGGAGCACACAGTGGAC
GAGGGCCAGGCCATTTTGGGGCGCTACCTGAACATGCCCTTCGCATTTAG
CATGGAACAAGAGATCCGTAAGGCTCGCAACATTTGCAAGAACCTCAAGG
ACTTCCCTGCCTACCTCGACGGCAAGCTGGTATCCTCTCAAATCAAGCAG
GCCGACGCGGTGGTATTCTTAACGAATGCCCGTGCGGGCATCTTTATGAC
GGGCCACGTCGGGTCTGGCTTGGTAGTGGCACGCAACTCGGACGGGTCCT
GGTCGGCGCCCTCAGCCGTCTTCTACCTTGGCTCGGGTATGGGCCTGCAA
GGCGGCGCAGATGTGACGGACTACGTGGTCATTCTGAAGCGCCAAGCTGT
GGACTCCTTCGCGGGTAACAACCAGCTGGTCTTGGGCGGCGACGTCGGCG
CGACATTTTGGATGGGGCGTCACGGCACGGCTGAGCTCCATATTGGAAAG
CGGACCGGTATGGCATTGGGCTGGGCGGCGAGCAAAGGGTTTTTTGCAGG
CGCAGCGGCCACAGCTGGCTATCTTTGCACTCGTGGTGGCATCAACAAGA
AATTTTACGGCCGTGAAGTGGACCCCTGTGACCTGCTCCACGGGAAGATC
AGCAAGCCTCGAGCCGCCAAGCCCCTGTACGAGGCCCTCAACGACTTGCC
GTAATGTGCTGGGCAGGAGAAGGAAGAAGGTAGAACAATTTTGGTGTTTG
AGAAAGAAGGGCAGTGGTCCTTAAACAGAAAGGAATGGAAGGTAAGGTTA
GTGCGGTGCTTGACTTGTGTGGTACATGAAAGACGATATTGGCAGAAGCA
GCAGTGGTCATTTTAATAAGAACAACAACAATTCCAGCAACACGTATGAA
GAAAGCCACGAAGAGAGACAAGCAAGTGTCTGCATTGTTCATTATGTGTG
TGTGCATGCGAGGGTTCCGTATGTCCCGTCTGCGGAAGAGCGGCTGCTTG
TCTAACCATGCTTGGGGGTGTAGTTAAGTGGGAGGTAAGAGAAAGCATGA
CTCGAGAGAAAAATGGGGTTTAACTTCACAGTTA

protein sequence of jgi.p|Nanoce1779_2|573274

>mRNA_1737-protein ID=mRNA_1737-protein|Name=jgi.p|Nanoce1779_2|573274|organism=Nannochloropsis oceanica|type=polypeptide|length=70bp
MPKEIKDIRDFLQKARRKDAKSVKVKKSSTGTKFKIRCSRYLYTLSVSDI
EKAEKLTQSLPPGLQRKDI*

mRNA from alignment at scaffold_1:1364676..1367584+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1737 ID=mRNA_1737|Name=jgi.p|Nanoce1779_2|573274|organism=Nannochloropsis oceanica|type=mRNA|length=2909bp|location=Sequence derived from alignment at scaffold_1:1364676..1367584+ (Nannochloropsis oceanica)
ACAGGAAGTACAGGTCAGCAACCTTTACTCAGGAATCATGGTACGTGCTG
TGGTGGCGCCTTACGAGGGGGGGGGCGGACCGGGGTAGGGGGCGACCGCA
GCATGGAGTCATGACTGAGATGTTTGTTGGGAGGGGGGTGGGCAGTAGGA
GGCGTGCAAGCACAGCGTGGGCACGCGGACGAGTGGAGTGCCTCACGCAT
GCATACTTCGAGTGTCATGGATATGGTATTTGAGTGTCGCATGTGGAGAC
ACGGTCGATCGGTCATCTCACTCCGTTTCCCTTTCCTCCCCTCCTTTGCT
CCCTCCCTCCCCTCAGCCCAAGGAGATCAAGGACATCCGCGACTTCCTCC
AGAAGGCCCGAAGGTACGTACAGCCTGTTAAAAGCACTCTAACAAGGAAT
TTTGCGGAAGAGAGCCGAAGAAATGGCTGGCATTTGTTCATATGTTTTCT
GTCTCGGTCTAGAGTGTTATGCCAGATTTAATTTGTTTCATGCGGCTACT
GGGGACCATAGGGCAAGGAAGTACATTTCCATAGAGTTAAACATCTGCGC
GCATTGTGCCCATCATCCTCTCAATTTTGATTCTTCCAACCTTTTGGTTC
TCCTCTGACGCCACAGAAAGGATGCCAAGTCAGTCAAGGTCAAGAAGTCC
AGCACCGGCACCAAGTTCAAGATTCGTTGCAGCCGGGTACGTACTTTGAT
GTGCATGCTTTTTAAATATGTTCCTTATCTGCATGTGTGCATTATTCATT
GGTGGTGTATGAAAGTGTTGATTGTTGCTTCCGCTTTCCTCGACTTGCCG
GAAGGGGTAGTCGCGTGCAAGAAATGGAAAGGGTGATCCCGGGCAGACAT
GAAAGGGGTAATCAAATTCAAAGCCACGTACACTCACCTCATCTTTTGCT
CCTCTCCTCTCTTCTCATTTCCATTTATGCAGTACTTGTACACGCTGTCG
GTCTCTGACATTGAGAAGGCCGAAAAGCTGACCCAGTCCCTGCCCCCTGG
GCTCCAGCGCAAGGACATCTAAGTGAGCAGAAAGATGGCATGATGGCGGG
GTAAGTGTTCCTGCGCTCCTTTGCTGCTGCTGTGTAGGCCTGTGGGAAAA
GGACAGGGAAGGGTTGGTGGGTCGGTGTGTTGTGGATGGAGAGAGCTACA
GTGAGGGAGAACGAGAAGGGAAGAGGAGGTTGGATATAGAGCTTTTCTTC
ACTTGACCTTTGCTAACTACAGAGCTGCAGCACGCGAAAGAAACAACAAC
CCAACCATCAACAGGACTGATCTACTGTTGTCGTTCACCAGCTGTGTGCT
ATCCTATTGCTTGTCGTATTTAGTGTGTACTTGCTGGCTTAATCGCCCGC
AACGGTTCTGGCGATAAATGCGTACGTCCGAACGTTCTTCATTTTTTCCT
TTCCTCTCCTTTTCCGTGGAGGGATATGCGCGACAAGAAGATTCCAGAAG
AAAAAGTGTGTTCCAAAGTATATGAAGATGTTCTTTTTAAGAGGATCAAG
TCAATTAAGTCGTATGCTTTTTTTTGTATATCTTTATACTTGGGTATGCG
GCAACTGTGGGGAAGCTACGTGCAGGCACCTTTGGCCGGAACTCCTTGTT
CGCTTGCATGTATGTCTCGGGCTTCCCTCTACGCGCTGGTGCTCCCTCAC
TGTTTTTCCCCTTGCTCTACGTTTACATTTTTCAATTACAGCAATATTCA
GCTTTCTTCCGACTATCGACGCCACCGCCCTCACCGTATCAACACTGGCA
GTAACGACGAAACAACAGCCAGCGAAATGACCACCAACATTCAGCAGACA
ATGGGGCAGATGGGGCAGTTCGTGGAACGTGGTGTGAAGCAACTGGTACC
CTCAGAAATGGAGCACACAGTGGACGAGGGCCAGGCCATTTTGGGGCGCT
ACCTGAACATGCCCTTCGCATTTAGCATGGAACAAGAGATCCGTAAGGCT
CGCAACATTTGCAAGAACCTCAAGGACTTCCCTGCCTACCTCGACGGCAA
GCTGGTATCCTCTCAAATCAAGCAGGCCGACGCGGTGGTATTCTTAACGA
ATGCCCGTGCGGGCATCTTTATGACGGGCCACGTCGGGTCTGGCTTGGTA
GTGGCACGCAACTCGGACGGGTCCTGGTCGGCGCCCTCAGCCGTCTTCTA
CCTTGGCTCGGGTATGGGCCTGCAAGGCGGCGCAGATGTGACGGACTACG
TGGTCATTCTGAAGCGCCAAGCTGTGGACTCCTTCGCGGGTAACAACCAG
CTGGTCTTGGGCGGCGACGTCGGCGCGACATTTTGGATGGGGCGTCACGG
CACGGCTGAGCTCCATATTGGAAAGCGGACCGGTATGGCATTGGGCTGGG
CGGCGAGCAAAGGGTTTTTTGCAGGCGCAGCGGCCACAGCTGGCTATCTT
TGCACTCGTGGTGGCATCAACAAGAAATTTTACGGCCGTGAAGTGGACCC
CTGTGACCTGCTCCACGGGAAGATCAGCAAGCCTCGAGCCGCCAAGCCCC
TGTACGAGGCCCTCAACGACTTGCCGTAATGTGCTGGGCAGGAGAAGGAA
GAAGGTAGAACAATTTTGGTGTTTGAGAAAGAAGGGCAGTGGTCCTTAAA
CAGAAAGGAATGGAAGGTAAGGTTAGTGCGGTGCTTGACTTGTGTGGTAC
ATGAAAGACGATATTGGCAGAAGCAGCAGTGGTCATTTTAATAAGAACAA
CAACAATTCCAGCAACACGTATGAAGAAAGCCACGAAGAGAGACAAGCAA
GTGTCTGCATTGTTCATTATGTGTGTGTGCATGCGAGGGTTCCGTATGTC
CCGTCTGCGGAAGAGCGGCTGCTTGTCTAACCATGCTTGGGGGTGTAGTT
AAGTGGGAGGTAAGAGAAAGCATGACTCGAGAGAAAAATGGGGTTTAACT
TCACAGTTA

Coding sequence (CDS) from alignment at scaffold_1:1364676..1367584+

>mRNA_1737 ID=mRNA_1737|Name=jgi.p|Nanoce1779_2|573274|organism=Nannochloropsis oceanica|type=CDS|length=840bp|location=Sequence derived from alignment at scaffold_1:1364676..1367584+ (Nannochloropsis oceanica)
ATGCCCAAGGAGATCAAGGACATCCGCGACTTCCTCCAGAAGGCCCGAAG
AAAGGATGCCAAGTCAGTCAAGGTCAAGAAGTCCAGCACCGGCACCAAGT
TCAAGATTCGTTGCAGCCGGTACTTGTACACGCTGTCGGTCTCTGACATT
GAGAAGGCCGAAAAGCTGACCCAGTCCCTGCCCCCTGGGCTCCAGCGCAA
GGACATCTAAATGCCCAAGGAGATCAAGGACATCCGCGACTTCCTCCAGA
AGGCCCGAAGAAAGGATGCCAAGTCAGTCAAGGTCAAGAAGTCCAGCACC
GGCACCAAGTTCAAGATTCGTTGCAGCCGGTACTTGTACACGCTGTCGGT
CTCTGACATTGAGAAGGCCGAAAAGCTGACCCAGTCCCTGCCCCCTGGGC
TCCAGCGCAAGGACATCTAAATGCCCAAGGAGATCAAGGACATCCGCGAC
TTCCTCCAGAAGGCCCGAAGAAAGGATGCCAAGTCAGTCAAGGTCAAGAA
GTCCAGCACCGGCACCAAGTTCAAGATTCGTTGCAGCCGGTACTTGTACA
CGCTGTCGGTCTCTGACATTGAGAAGGCCGAAAAGCTGACCCAGTCCCTG
CCCCCTGGGCTCCAGCGCAAGGACATCTAAATGCCCAAGGAGATCAAGGA
CATCCGCGACTTCCTCCAGAAGGCCCGAAGAAAGGATGCCAAGTCAGTCA
AGGTCAAGAAGTCCAGCACCGGCACCAAGTTCAAGATTCGTTGCAGCCGG
TACTTGTACACGCTGTCGGTCTCTGACATTGAGAAGGCCGAAAAGCTGAC
CCAGTCCCTGCCCCCTGGGCTCCAGCGCAAGGACATCTAA

Synonyms

Publications