jgi.p|Nanoce1779_2|555723, gene_5831 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|555723
Unique Namegene_5831
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_11:678932..685676 +

Link to JBrowse

Properties
Property NameValue
TranscriptId555809
ProteinId555723
Product namechromodomainhelicaseDNAbinding protein putative
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_11supercontigscaffold_11:678932..685676 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0004386helicase activity
GO:0005515protein binding
GO:0003682chromatin binding
GO:0003677DNA binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0000785chromatin
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006333chromatin assembly or disassembly
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL069ncniL069Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO14G02490NO14G02490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555723mRNA_5831-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|555723mRNA_5831Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|555723

>mRNA_5831-protein ID=mRNA_5831-protein|Name=jgi.p|Nanoce1779_2|555723|organism=Nannochloropsis oceanica|type=polypeptide|length=1522bp
MVDERVRTVEPYLEGPVSGKSWSPIVRCRYLFNKIVEDEYSEWFYDPVDT
SLYTDYLSFVAHPMCLSQIQARLQEPFAYDGNPHQFAADMRLIWANCVEY
NGGHPGSAAYQAGLMLSKKFERLFLAWVMAFENESVSWDDPAARPWEAGC
RKSAGAKKAKGGKKEEGKEEIEKPELLLSCDNCEAEYYTFNLIPPLSDVP
AGLWWCPRCEGLDLESRGNVHSHAQEEAVREKVMRGLKERKLVTRRLYLV
KWKDLGYGMCTWETPKDMNDDKKIEEYHKVNDSAPPEAAVPQEELAYHLH
KKPYSSLYRPAVRVGDEQSELEFQVYAQIRAFHFLKWGLAPPPALLHDCG
SVVHAYSCLEEKEEREEEARREAEDTRVAAGGASLDKEEKMDEKTLRAKR
ATHEQVALCLSSIVDHIARGLLMPPPGPAQKGGEYDVSFYRKPGETLSLN
IGNYQEKVVVMGFRPREDGSKAALEKSERVRENDVLVAVNGESVLNVPFR
EVIEKLGQTSHYMTLRFEKKTKSATAYEQIQFPAESDSEAEAENAALAAR
EKDAPDSLSAWTTLGQVSRLIRAVRHVEAPPSREKWAGMFYYERDPPPPP
KPINVHGKAEDGEEPLWKQRLPTEQKVFKDGNKLRDYQLLGVQWLLKCWY
QRRSCILADEMGLGKTVQIVTMLEHIYSVDGLPGPFLVVVPLSTIEHWRR
EFEAWTDMRFCMYYDVGGARGMRDVMREYEWYYRNRSRRILKIHVLVTTY
EALIKDYEEIAEIPWRCIIVDEAHRLRNWRGKLHECLKVVSQTGLQQYGY
QHRVLMTGTPLQNNTQELWSLLHYIEPTKFPDMEKFNERYGKVESVDQVQ
QLQKRLEPHLLRRTKEDVATDIPAKEETIIDVELTTLQKQYYRAIFERNH
AFLYNKAGMRGLLPKLMNIQMELRKCCNHPYLVDGVEDSEMEMLQETITD
PVQLEHERMERGLVASSGKMVLVDKLLPKLRREGHKVLIFSQMIKVLDLL
EEFCERRGFPVERLDGRVTGNQRQQAIDRFNTEANSFVFLLSTRAGGVGI
NLTAADTVIIFDSDWNPQNDVQAMARCHRIGQTKEVQVYRLITRKSFESE
MFERASKKLGLEHAVLGGHNFRDDGGGEGGGEGGLIASVDKPTNKEMEQL
LRQGAYALLDEDDEDAKEFCEDDIDKIMKERTHRVVLDAPGKTASWLTKK
AGAFKKRAFTSSQGVAAADVDVNDPDFWAKVMPDLKTPESLDRRFELLSE
GEGQEGKEVEEAGAFFKDLEDLVRRMIDLHEKGKCPTRDREICTMLLFKV
SIKEDLFTGEQKGMVAKWRASLEGTRVRTCRQDMNVESDDEEGGDRAPGA
SARSRRMRRAAAREVDSHSDVCMICFDGGSLLMCDGVCKRSFHMKCVGVE
QPPATDWLCDDCNFGNMLCLICGVAGVVNEDVHKCKKPQCGRFYHMGCLQ
GDERVKWFKSQQDKFYCAQHVCTTCGEKPGIKPDKENFFLTCLKCPTASH
LMCALGKQVKVLTYRSMFCEAH
back to top
Synonyms
Publications