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Properties
| Property Name | Value |
|---|
| TranscriptId | 37961 |
| Track | FilteredModels2 |
| ProteinId | 37875 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:623198..624559 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5810 ID=mRNA_5810|Name=jgi.p|Nanoce1779_2|37875|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp
AGATCGTTACTTTTTCAGAAAGACGCTCAGACTCCATCCACCACACGACG
TTCCGCAAAACAACACAACACAGACAAGGTACACGGCTTCATGATGTCCG
CGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCATCATCACA
TCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTGCAGTCCG
TGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTGCTGGACT
CGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCATGTATAT
GTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCTACAATGT
GCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAGGCTGTCC
TATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGTCTTGAAC
GCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGCACCACAA
AGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTACGTGCGGG
AGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGCCGGCGCG
GATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGCGTCGACA
TGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAGGACGAAA
GAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTTTGCTCTA
GTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAGGCAGCAA
AGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATTGATATTT
ATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCAAGTCTTT
ACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAGGAGGGGG
AGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAGGACACTT
ATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGACTCGTTC
GCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGACTCGTCTC
CACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGTAAAAGCT
GGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTATGGGGAG
CCGATTGAGTGAACAAAGACACGAGTAAGAGATTTAGGCTGATAGACTGA
TAAATGGTTAAATGAGATATTAAGTCTTTCAGGGTTACCAGTATCAATGT
TGCTCCTTGGAATTGCTTTGGAAGGACCTGCTCCACATCTCTTTTTAACA
TTATCTAAAGGG back to topprotein sequence of jgi.p|Nanoce1779_2|37875 >mRNA_5810-protein ID=mRNA_5810-protein|Name=jgi.p|Nanoce1779_2|37875|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MMSASSTVDIRLPPHSSIITSDAFVDAASRCVPSAVRAFLDNPATAGLIN
VLDSQGRHAAEEAAREGHVYVLELLLQGCDLPAPYNVHQAFHLAASGGHA
EAVLFLLAQRAVKIDVNVLNADRQSALHLAAQRGHHKVLKVLLDKATPDP
YVREATLGKTPAEMAVDAGADNCVALLNKYETTWRRHVLQLLLRAMTGKE
KDERGVAGKKCRLAEIPFALVHSHVLEALAGREGGSKEGRDGFPTSIMEG
IDIYRDNFESDDEKDFPQVFTQEPKRRKLGGGSGGGGGRMIQQEEGEAAE
EDTYVYKGMLPSSQDSNDSFASSSSGTASSGGDRLVSTRGRGEGGGGRAS
RKSWVAMKERPLPSCSFYGEPIE* back to topmRNA from alignment at scaffold_11:623198..624559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5810 ID=mRNA_5810|Name=jgi.p|Nanoce1779_2|37875|organism=Nannochloropsis oceanica|type=mRNA|length=1362bp|location=Sequence derived from alignment at scaffold_11:623198..624559- (Nannochloropsis oceanica)
AGATCGTTACTTTTTCAGAAAGACGCTCAGACTCCATCCACCACACGACG
TTCCGCAAAACAACACAACACAGACAAGGTACACGGCTTCATGATGTCCG
CGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAGCATCATCACA
TCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCTCTGCAGTCCG
TGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAATGTGCTGGACT
CGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGGTCATGTATAT
GTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCACCCTACAATGT
GCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCGGAGGCTGTCC
TATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAACGTCTTGAAC
GCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAGGGCACCACAA
AGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCGTACGTGCGGG
AGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGATGCCGGCGCG
GATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGTGGCGTCGACA
TGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAGAAGGACGAAA
GAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCCGTTTGCTCTA
GTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAGGAGGCAGCAA
AGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGGATTGATATTT
ATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCCTCAAGTCTTT
ACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTGGAGGAGGGGG
AGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAAGAGGACACTT
ATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAATGACTCGTTC
GCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACAGACTCGTCTC
CACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCGCGTAAAAGCT
GGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTTCTATGGGGAG
CCGATTGAGTGAACAAAGACACGAGTAAGAGATTTAGGCTGATAGACTGA
TAAATGGTTAAATGAGATATTAAGTCTTTCAGGGTTACCAGTATCAATGT
TGCTCCTTGGAATTGCTTTGGAAGGACCTGCTCCACATCTCTTTTTAACA
TTATCTAAAGGG back to topCoding sequence (CDS) from alignment at scaffold_11:623198..624559- >mRNA_5810 ID=mRNA_5810|Name=jgi.p|Nanoce1779_2|37875|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_11:623198..624559- (Nannochloropsis oceanica)
ATGATGTCCGCGTCATCTACTGTCGATATTCGTCTCCCCCCACATTCAAG
CATCATCACATCCGATGCATTTGTGGACGCGGCATCTAGATGCGTTCCCT
CTGCAGTCCGTGCCTTTCTCGACAATCCCGCCACGGCGGGTCTAATCAAT
GTGCTGGACTCGCAAGGCCGGCATGCCGCAGAGGAAGCGGCGCGCGAAGG
TCATGTATATGTCCTGGAGCTGCTCTTGCAAGGTTGTGACTTGCCCGCAC
CCTACAATGTGCATCAAGCGTTTCACCTTGCTGCCAGTGGGGGGCACGCG
GAGGCTGTCCTATTCCTTCTTGCACAACGAGCCGTCAAGATAGATGTGAA
CGTCTTGAACGCCGACCGTCAAAGCGCCCTTCACCTAGCCGCGCAGCGAG
GGCACCACAAAGTGCTCAAGGTTCTCCTTGACAAGGCAACTCCTGATCCG
TACGTGCGGGAGGCCACGTTGGGGAAAACTCCTGCTGAGATGGCTGTAGA
TGCCGGCGCGGATAACTGCGTGGCATTGCTCAACAAATACGAAACGACGT
GGCGTCGACATGTCTTACAGCTATTGCTTCGGGCAATGACTGGCAAGGAG
AAGGACGAAAGAGGAGTAGCTGGCAAGAAGTGTCGATTGGCTGAGATCCC
GTTTGCTCTAGTTCATTCGCACGTATTGGAGGCGTTGGCCGGGCGAGAAG
GAGGCAGCAAAGAAGGGAGGGATGGCTTTCCAACTTCGATCATGGAGGGG
ATTGATATTTATCGCGACAATTTCGAAAGCGATGACGAGAAAGACTTCCC
TCAAGTCTTTACTCAGGAACCTAAGCGACGCAAACTTGGAGGAGGTAGTG
GAGGAGGGGGAGGACGTATGATTCAGCAAGAGGAGGGGGAGGCCGCGGAA
GAGGACACTTATGTGTACAAAGGCATGTTACCCAGCAGCCAGGATAGTAA
TGACTCGTTCGCATCGTCATCGTCGGGAACGGCGAGTAGTGGTGGAGACA
GACTCGTCTCCACTCGCGGTAGAGGAGAAGGTGGGGGGGGACGGGCGTCG
CGTAAAAGCTGGGTGGCGATGAAGGAGAGGCCGTTACCATCATGCAGCTT
CTATGGGGAGCCGATTGAGTGA back to top
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