Properties
| Property Name | Value |
|---|
| TranscriptId | 590232 |
| Track | FilteredModels2 |
| ProteinId | 590146 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_11 | supercontig | scaffold_11:441632..442678 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_5732 ID=mRNA_5732|Name=jgi.p|Nanoce1779_2|590146|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
ACAGGCCCCGCCGCTCCACCACTCACACGTCACGCTATGCAGTACTATGG
ACGAGCCAGTTACTGGGACTATCGCTACACCAATGACCCAGAGCCGTTTG
ACTGGTACCAAAAATACAGCGCTCTCAAGGAGTTTTTGGGGCTATACATC
AGAAAGAACGACGCTGTCCTAGTGGCCGGTGCAGGAAACTCAAGCCTGAG
CGAGGAAATGTACCAAGAAGGTATTACGAATATTACCAACGTTGATATCT
CTCGCGTGGTGGTGGACCAGATGCAGGAGCGACACCGAGGAGTGACCAGC
ATGGTATGGCAGGAGATGGACATGTGCGCGTTGGACTTTGGGGACGCCTC
TTTCAACGTAGTGCTCGACAAGGGAACTATGGACTCGATCCTTTGTGGGA
AAGGCTCCATCACCAATGTGACCAGCATGTGCATGGAAGTCTCACGCGTT
CTCAAGTCCGAAGGCATCTTTATCATTGTTTCCTACGGCATTCCATCCAA
CCGTCTTCAGTACCTCCAAGAGGAGAGATACAAGTGGCGCGTTTCAGTTC
ACAGTGTACCCAAGCCATCTGTCACTGTCTCATCTTCCTCCTCGTCCACA
ACCTCTGATGCCGCCGATCCTACAGATGCCGGCAGCGTGCACTACATCTA
CATCTGCCAAAAGGGGCCTGTCACATCCACCCTGACAGAAAAAGGCACAG
AAACGGGGACAGATTGGTATACACAAGGGAGCGAGGGGGTGCAAATCGCA
GCACGGGAGATCACGACGGAGAATCAGAAAGGGTTGTAAGCCAGCAGCGA
CAGTGTGGGGGGAGGAGGAAGAGTGTGTATGTACAGATTACTTGAAGAGA
GAGAAGAGCAAAATGGGATTGGTACTGTTGAAAATGAAGAGATGTGCATC
AGTCGTGATGAAAGAAAAATACTCTCGTATTACTGA back to topprotein sequence of jgi.p|Nanoce1779_2|590146 >mRNA_5732-protein ID=mRNA_5732-protein|Name=jgi.p|Nanoce1779_2|590146|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp
MQYYGRASYWDYRYTNDPEPFDWYQKYSALKEFLGLYIRKNDAVLVAGAG
NSSLSEEMYQEGITNITNVDISRVVVDQMQERHRGVTSMVWQEMDMCALD
FGDASFNVVLDKGTMDSILCGKGSITNVTSMCMEVSRVLKSEGIFIIVSY
GIPSNRLQYLQEERYKWRVSVHSVPKPSVTVSSSSSSTTSDAADPTDAGS
VHYIYICQKGPVTSTLTEKGTETGTDWYTQGSEGVQIAAREITTENQKGL
* back to topmRNA from alignment at scaffold_11:441632..442678- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_5732 ID=mRNA_5732|Name=jgi.p|Nanoce1779_2|590146|organism=Nannochloropsis oceanica|type=mRNA|length=1047bp|location=Sequence derived from alignment at scaffold_11:441632..442678- (Nannochloropsis oceanica)
ACAGGCCCCGCCGCTCCACCACTCACACGTCACGCTATGCAGTACTATGG
ACGAGCCAGTTACTGGGACTATCGCTACACCAAGTAAGTCCGTTCTCAAG
CTTTCACCCTTTACAACGCAACCCACAATAAGCATGCCAATCAACCCCTT
CACGTTCCCGTTCCGCACCGCCCCGATACCTCGCAACAATACAGTGACCC
AGAGCCGTTTGACTGGTACCAAAAATACAGCGCTCTCAAGGAGTTTTTGG
GGCTATACATCAGAAAGAACGACGCTGTCCTAGTGGCCGGTGCAGGAAAC
TCAAGCCTGAGCGAGGAAATGTACCAAGAAGGTATTACGAATATTACCAA
CGTTGATATCTCTCGCGTGGTGGTGGACCAGATGCAGGAGCGACACCGAG
GAGTGACCAGCATGGTATGGCAGGAGATGGACATGTGCGCGTTGGACTTT
GGGGACGCCTCTTTCAACGTAGTGCTCGACAAGGGAACTATGGACTCGAT
CCTTTGTGGGAAAGGCTCCATCACCAATGTGACCAGCATGTGCATGGAAG
TCTCACGCGTTCTCAAGTCCGAAGGCATCTTTATCATTGTTTCCTACGGC
ATTCCATCCAACCGTCTTCAGTACCTCCAAGAGGAGAGATACAAGTGGCG
CGTTTCAGTTCACAGTGTACCCAAGCCATCTGTCACTGTCTCATCTTCCT
CCTCGTCCACAACCTCTGATGCCGCCGATCCTACAGATGCCGGCAGCGTG
CACTACATCTACATCTGCCAAAAGGGGCCTGTCACATCCACCCTGACAGA
AAAAGGCACAGAAACGGGGACAGATTGGTATACACAAGGGAGCGAGGGGG
TGCAAATCGCAGCACGGGAGATCACGACGGAGAATCAGAAAGGGTTGTAA
GCCAGCAGCGACAGTGTGGGGGGAGGAGGAAGAGTGTGTATGTACAGATT
ACTTGAAGAGAGAGAAGAGCAAAATGGGATTGGTACTGTTGAAAATGAAG
AGATGTGCATCAGTCGTGATGAAAGAAAAATACTCTCGTATTACTGA back to topCoding sequence (CDS) from alignment at scaffold_11:441632..442678- >mRNA_5732 ID=mRNA_5732|Name=jgi.p|Nanoce1779_2|590146|organism=Nannochloropsis oceanica|type=CDS|length=1506bp|location=Sequence derived from alignment at scaffold_11:441632..442678- (Nannochloropsis oceanica)
TGACCCAGAGCCGTTTGACTGGTACCAAAAATACAGCGCTCTCAAGGAGT
TTTTGGGGCTATACATCAGAAAGAACGACGCTGTCCTAGTGGCCGGTGCA
GGAAACTCAAGCCTGAGCGAGGAAATGTACCAAGAAGGTATTACGAATAT
TACCAACGTTGATATCTCTCGCGTGGTGGTGGACCAGATGCAGGAGCGAC
ACCGAGGAGTGACCAGCATGGTATGGCAGGAGATGGACATGTGCGCGTTG
GACTTTGGGGACGCCTCTTTCAACGTAGTGCTCGACAAGGGAACTATGGA
CTCGATCCTTTGTGGGAAAGGCTCCATCACCAATGTGACCAGCATGTGCA
TGGAAGTCTCACGCGTTCTCAAGTCCGAAGGCATCTTTATCATTGTTTCC
TACGGCATTCCATCCAACCGTCTTCAGTACCTCCAAGAGGAGAGATACAA
GTGGCGCGTTTCAGTTCACAGTGTACCCAAGCCATCTGTCACTGTCTCAT
CTTCCTCCTCGTCCACAACCTCTGATGCCGCCGATCCTACAGATGCCGGC
AGCGTGCACTACATCTACATCTGCCAAAAGGGGCCTGTCACATCCACCCT
GACAGAAAAAGGCACAGAAACGGGGACAGATTGGTATACACAAGGGAGCG
AGGGGGTGCAAATCGCAGCACGGGAGATCACGACGGAGAATCAGAAAGGG
TTGTAAATGCAGTACTATGGACGAGCCAGTTACTGGGACTATCGCTACAC
CAATGACCCAGAGCCGTTTGACTGGTACCAAAAATACAGCGCTCTCAAGG
AGTTTTTGGGGCTATACATCAGAAAGAACGACGCTGTCCTAGTGGCCGGT
GCAGGAAACTCAAGCCTGAGCGAGGAAATGTACCAAGAAGGTATTACGAA
TATTACCAACGTTGATATCTCTCGCGTGGTGGTGGACCAGATGCAGGAGC
GACACCGAGGAGTGACCAGCATGGTATGGCAGGAGATGGACATGTGCGCG
TTGGACTTTGGGGACGCCTCTTTCAACGTAGTGCTCGACAAGGGAACTAT
GGACTCGATCCTTTGTGGGAAAGGCTCCATCACCAATGTGACCAGCATGT
GCATGGAAGTCTCACGCGTTCTCAAGTCCGAAGGCATCTTTATCATTGTT
TCCTACGGCATTCCATCCAACCGTCTTCAGTACCTCCAAGAGGAGAGATA
CAAGTGGCGCGTTTCAGTTCACAGTGTACCCAAGCCATCTGTCACTGTCT
CATCTTCCTCCTCGTCCACAACCTCTGATGCCGCCGATCCTACAGATGCC
GGCAGCGTGCACTACATCTACATCTGCCAAAAGGGGCCTGTCACATCCAC
CCTGACAGAAAAAGGCACAGAAACGGGGACAGATTGGTATACACAAGGGA
GCGAGGGGGTGCAAATCGCAGCACGGGAGATCACGACGGAGAATCAGAAA
GGGTTGTAAATGCAGTACTATGGACGAGCCAGTTACTGGGACTATCGCTA
CACCAA back to top
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