jgi.p|Nanoce1779_2|589774, mRNA_5623 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|589774
Unique Name	mRNA_5623
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1156
Alignment location	scaffold_11:154052..155207 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	589860
Track	FilteredModels2
ProteinId	589774

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:154052..155207 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589774	gene_5623	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|589774	mRNA_5623-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5623	CDS_5623	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:154052..155207-
coding sequence from alignment at scaffold_11:154052..155207-

mRNA sequence

>mRNA_5623 ID=mRNA_5623|Name=jgi.p|Nanoce1779_2|589774|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp
AAAGACGGCACTCGGATGGTGATGAGAGTGTGGAAGTGGGCCTTGCTTGT
CCATCGGTCTTATCATTCGGCAAGAGCACTATACACACCACGCTTGTCTA
GGCTTATAGGTAACATAGCATCCTCGTAGTTTGTATGTTGTTATTAGTAT
TTAGGATTCTGGTTGTTGGCGTAGTGCGCATGATGCAAATGGGTCTTGAA
TGTGCCTCGAGCACGACTTCTACTGAATACCTGCATCTCGTCCACCCTCC
TCCCACCACACAAACTGAGCACGGTATTTCTTCTTCTCTTCAATCCGAGC
AATCCCCAGCGATACACCACTGCCGTGCTTATAGGATCTCTTACCCCATC
GCAAGTGAAAATAAAAAATGGGCCACCATTCCCCTCCCTCCCGCATGGAG
AACATGCGCATTCATCATACCTCCCTGGTCCTGGCAGCCAGGAACCCTTT
CCTCCAGCTACCCTCTGACGCCTCGAGCACCGTCCAAATATGGGCCGGCC
ATGCGAGTGGACATACGACCGTGAGAATCACTCCTACCGTCACCCTCACA
CCCAATGCCCCTGTGACCATCCCTCCCTCTCCTCAGCCTTCTCCCACACC
TACAGCTCCGGAGGTGGAAAGCGGCAGCAGCAGCGAAAGTGATGATGACC
CACTTCCAGCACCCACTGCTCCCACTGCTCCCCCTCCACCTGCAACTGTT
CCACCTGCAGCTGTGCCATTGCCATCTTTTCCTCCTCCTTCCAATCCCCC
TAGCGGTACCAAGGTATATGCCGCCTACTTTACCCTTATCCTGACCACCC
TCCCCCTCCAAAACTTCGAGACCAGTATCGCGAGGGCCCTTATCGCCGAT
GCTGCCTTTGTGAGCCCCAGCCGAGTCAACCTCAAGGCCACCACACCCTC
TCTCTTCCCCCGGCTCTGGCACTCCCGCCTCCTCCAGGCCAGCTCCAGGC
CAGCAGCACCGAGCTCGTCGTTCGCGTTACCAACCTCCCTGACGAACACA
CAGCCACTGCCTTGGTCTCGCGTCTCGACCCTTACTTCACCTCCCCCGAG
CCAATGGGGTTTGGCTCGCAATACACTAAAGCTACCAGCCCTTCCTCCGC
CGCCTCCTCCCTCTCCGTGCTTATGCGAGAGAGCGGGGCCAGAGTCTTTA
CAATCG

protein sequence of jgi.p|Nanoce1779_2|589774

>mRNA_5623-protein ID=mRNA_5623-protein|Name=jgi.p|Nanoce1779_2|589774|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MLLLVFRILVVGVVRMMQMGLECASSTTSTEYLHLVHPPPTTQTEHGISS
SLQSEQSPAIHHCRAYRISYPIASENKKWATIPLPPAWRTCAFIIPPWSW
QPGTLSSSYPLTPRAPSKYGPAMRVDIRP*

mRNA from alignment at scaffold_11:154052..155207-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5623 ID=mRNA_5623|Name=jgi.p|Nanoce1779_2|589774|organism=Nannochloropsis oceanica|type=mRNA|length=1156bp|location=Sequence derived from alignment at scaffold_11:154052..155207- (Nannochloropsis oceanica)
AAAGACGGCACTCGGATGGTGATGAGAGTGTGGAAGTGGGCCTTGCTTGT
CCATCGGTCTTATCATTCGGCAAGAGCACTATACACACCACGCTTGTCTA
GGCTTATAGGTAACATAGCATCCTCGTAGTTTGTATGTTGTTATTAGTAT
TTAGGATTCTGGTTGTTGGCGTAGTGCGCATGATGCAAATGGGTCTTGAA
TGTGCCTCGAGCACGACTTCTACTGAATACCTGCATCTCGTCCACCCTCC
TCCCACCACACAAACTGAGCACGGTATTTCTTCTTCTCTTCAATCCGAGC
AATCCCCAGCGATACACCACTGCCGTGCTTATAGGATCTCTTACCCCATC
GCAAGTGAAAATAAAAAATGGGCCACCATTCCCCTCCCTCCCGCATGGAG
AACATGCGCATTCATCATACCTCCCTGGTCCTGGCAGCCAGGAACCCTTT
CCTCCAGCTACCCTCTGACGCCTCGAGCACCGTCCAAATATGGGCCGGCC
ATGCGAGTGGACATACGACCGTGAGAATCACTCCTACCGTCACCCTCACA
CCCAATGCCCCTGTGACCATCCCTCCCTCTCCTCAGCCTTCTCCCACACC
TACAGCTCCGGAGGTGGAAAGCGGCAGCAGCAGCGAAAGTGATGATGACC
CACTTCCAGCACCCACTGCTCCCACTGCTCCCCCTCCACCTGCAACTGTT
CCACCTGCAGCTGTGCCATTGCCATCTTTTCCTCCTCCTTCCAATCCCCC
TAGCGGTACCAAGGTATATGCCGCCTACTTTACCCTTATCCTGACCACCC
TCCCCCTCCAAAACTTCGAGACCAGTATCGCGAGGGCCCTTATCGCCGAT
GCTGCCTTTGTGAGCCCCAGCCGAGTCAACCTCAAGGCCACCACACCCTC
TCTCTTCCCCCGGCTCTGGCACTCCCGCCTCCTCCAGGCCAGCTCCAGGC
CAGCAGCACCGAGCTCGTCGTTCGCGTTACCAACCTCCCTGACGAACACA
CAGCCACTGCCTTGGTCTCGCGTCTCGACCCTTACTTCACCTCCCCCGAG
CCAATGGGGTTTGGCTCGCAATACACTAAAGCTACCAGCCCTTCCTCCGC
CGCCTCCTCCCTCTCCGTGCTTATGCGAGAGAGCGGGGCCAGAGTCTTTA
CAATCG

Coding sequence (CDS) from alignment at scaffold_11:154052..155207-

>mRNA_5623 ID=mRNA_5623|Name=jgi.p|Nanoce1779_2|589774|organism=Nannochloropsis oceanica|type=CDS|length=390bp|location=Sequence derived from alignment at scaffold_11:154052..155207- (Nannochloropsis oceanica)
ATGTTGTTATTAGTATTTAGGATTCTGGTTGTTGGCGTAGTGCGCATGAT
GCAAATGGGTCTTGAATGTGCCTCGAGCACGACTTCTACTGAATACCTGC
ATCTCGTCCACCCTCCTCCCACCACACAAACTGAGCACGGTATTTCTTCT
TCTCTTCAATCCGAGCAATCCCCAGCGATACACCACTGCCGTGCTTATAG
GATCTCTTACCCCATCGCAAGTGAAAATAAAAAATGGGCCACCATTCCCC
TCCCTCCCGCATGGAGAACATGCGCATTCATCATACCTCCCTGGTCCTGG
CAGCCAGGAACCCTTTCCTCCAGCTACCCTCTGACGCCTCGAGCACCGTC
CAAATATGGGCCGGCCATGCGAGTGGACATACGACCGTGA

Synonyms

Publications