jgi.p|Nanoce1779_2|639444, mRNA_5837 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|639444
Unique Name	mRNA_5837
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1737
Alignment location	scaffold_11:697963..699699 -

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Properties


Property Name	Value
TranscriptId	639530
Track	FilteredModels2
ProteinId	639444

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_11	supercontig	scaffold_11:697963..699699 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639444	gene_5837	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_5837	CDS_5837	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|639444	mRNA_5837-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_11:697963..699699-
coding sequence from alignment at scaffold_11:697963..699699-

mRNA sequence

>mRNA_5837 ID=mRNA_5837|Name=jgi.p|Nanoce1779_2|639444|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGAT
GACTTTCACTGCAAGGATTTCGCTGTGCCTGTAGGGGAGGACGTCTGGTT
GTGTCGCAACCCCCTTGCCAGTTTCTTTCGGTTGGATGACGTCGTGGCCG
TTAAGGAGGTAGAGGAGGATAAAAGGGGAGTGGATGAGGACGAGGAGGAG
GAAGAGGAGGAGTTTATGGTACATGTAGGGTTTGGAGGAACCGAGGACCT
CTCCAGCGTGTTTCGGAAGAAGATGTGGGTGCCTCGGCACGTGGGTGTGT
TTGTGGCTGGTTTGCCAACCACAAGAGAAGGGGGAAGGTTTCAACTAGAA
CAATTCGCGGGGAAATCAAAAGAGCAAACGGGGAGGGTGCTGGGGGCATT
GATCCATACAGGTGTGCTGCTGAGAGACAAGGAATGA

protein sequence of jgi.p|Nanoce1779_2|639444

>mRNA_5837-protein ID=mRNA_5837-protein|Name=jgi.p|Nanoce1779_2|639444|organism=Nannochloropsis oceanica|type=polypeptide|length=579bp
MAREAPVTKTKKQRINTKRSANDIRATFSTSSDESSAGIKAKKSVRSLSA
SKEHGSHLHLSPDMFPKLLGPISPDAFLREHYHTKSPLLIKGHNFVPFLD
EEMEGGDILGLLESSPSENISVWTVTGPAQKINTARVQDAGSAAALYVAG
HSVYCRAPEAVESVLVESAIGALGLGCRMSQPGVKSVIEGEVEMFLSHAG
HHTPFHFDFQENVTLQLKGRKRWRLKKGVKNPVRGCTPHYRQVDGVLDAA
GEEQVKVHRLRDSHFVFQGPKEDEEEEMVVMVEEGDVFYHPAGVWHAVEC
LEESISINVSLDGMTYADLFSGALKQVLWGEEDGRFTAMVATGDGSAKDG
GKEGGKDDSRRQRKQKQQKRQEDVTEKPQARMRRLLLEASERFKVLAERP
EALLPPCVWWNSGLPPMKDAAAAPYEKGEEAEEGEGDEGGDGEEEEEGDD
DFHCKDFAVPVGEDVWLCRNPLASFFRLDDVVAVKEVEEDKRGVDEDEEE
EEEEFMVHVGFGGTEDLSSVFRKKMWVPRHVGVFVAGLPTTREGGRFQLE
QFAGKSKEQTGRVLGALIHTGVLLRDKE*

mRNA from alignment at scaffold_11:697963..699699-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_5837 ID=mRNA_5837|Name=jgi.p|Nanoce1779_2|639444|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_11:697963..699699- (Nannochloropsis oceanica)
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGAT
GACTTTCACTGCAAGGATTTCGCTGTGCCTGTAGGGGAGGACGTCTGGTT
GTGTCGCAACCCCCTTGCCAGTTTCTTTCGGTTGGATGACGTCGTGGCCG
TTAAGGAGGTAGAGGAGGATAAAAGGGGAGTGGATGAGGACGAGGAGGAG
GAAGAGGAGGAGTTTATGGTACATGTAGGGTTTGGAGGAACCGAGGACCT
CTCCAGCGTGTTTCGGAAGAAGATGTGGGTGCCTCGGCACGTGGGTGTGT
TTGTGGCTGGTTTGCCAACCACAAGAGAAGGGGGAAGGTTTCAACTAGAA
CAATTCGCGGGGAAATCAAAAGAGCAAACGGGGAGGGTGCTGGGGGCATT
GATCCATACAGGTGTGCTGCTGAGAGACAAGGAATGA

Coding sequence (CDS) from alignment at scaffold_11:697963..699699-

>mRNA_5837 ID=mRNA_5837|Name=jgi.p|Nanoce1779_2|639444|organism=Nannochloropsis oceanica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_11:697963..699699- (Nannochloropsis oceanica)
ATGGCGCGCGAAGCCCCGGTCACTAAGACCAAGAAACAGCGTATCAACAC
GAAACGTTCCGCCAACGATATAAGGGCGACTTTTTCCACATCCTCAGACG
AAAGCTCTGCTGGCATTAAAGCCAAAAAGAGTGTTCGCTCCCTCTCGGCC
AGCAAGGAACATGGGAGCCACCTGCACCTATCTCCCGACATGTTTCCCAA
GCTGCTCGGCCCTATTTCCCCCGATGCCTTTCTCCGAGAGCATTACCACA
CCAAATCCCCCCTTCTTATCAAAGGCCACAATTTTGTTCCCTTTCTTGAT
GAGGAGATGGAGGGTGGGGATATTTTAGGGCTCCTCGAATCGAGCCCAAG
TGAGAATATCAGCGTTTGGACAGTAACTGGCCCTGCGCAGAAGATCAACA
CTGCACGCGTCCAAGATGCGGGAAGCGCTGCGGCATTGTATGTAGCAGGT
CATAGTGTGTATTGTCGGGCACCAGAGGCGGTGGAGAGCGTGTTGGTGGA
GTCGGCCATTGGGGCTTTAGGGTTAGGGTGTCGAATGAGCCAGCCTGGGG
TTAAGTCAGTGATTGAAGGAGAGGTAGAGATGTTCTTGAGTCATGCGGGA
CACCATACCCCTTTCCATTTCGATTTCCAGGAAAATGTGACGTTGCAATT
GAAGGGACGGAAGAGGTGGCGGTTGAAAAAAGGGGTTAAGAATCCGGTGA
GAGGATGTACGCCTCACTACCGGCAGGTGGATGGAGTGTTGGATGCGGCG
GGGGAGGAACAAGTGAAGGTACATCGATTAAGGGATTCACATTTTGTGTT
TCAAGGGCCTAAAGAGGATGAGGAGGAGGAGATGGTGGTGATGGTGGAGG
AGGGGGACGTGTTCTACCACCCGGCAGGTGTGTGGCATGCGGTGGAGTGC
TTGGAGGAAAGTATTTCAATTAACGTTAGCCTGGACGGGATGACCTACGC
GGATTTATTCTCGGGGGCCCTTAAGCAAGTGCTATGGGGGGAGGAGGATG
GTAGATTTACGGCAATGGTGGCCACAGGTGATGGGAGTGCGAAGGATGGA
GGGAAGGAAGGTGGGAAAGATGATAGTAGGAGACAGAGGAAGCAGAAGCA
ACAGAAACGGCAAGAGGATGTAACGGAGAAGCCCCAGGCGAGGATGAGAA
GGTTGTTGCTGGAGGCGTCAGAAAGATTCAAGGTGCTGGCCGAAAGGCCC
GAGGCGTTATTGCCCCCGTGTGTTTGGTGGAATTCTGGTTTGCCGCCAAT
GAAGGATGCTGCTGCTGCTCCTTACGAGAAGGGGGAGGAGGCGGAGGAGG
GAGAGGGGGACGAGGGGGGGGATGGGGAAGAGGAGGAGGAAGGTGATGAT
GACTTTCACTGCAAGGATTTCGCTGTGCCTGTAGGGGAGGACGTCTGGTT
GTGTCGCAACCCCCTTGCCAGTTTCTTTCGGTTGGATGACGTCGTGGCCG
TTAAGGAGGTAGAGGAGGATAAAAGGGGAGTGGATGAGGACGAGGAGGAG
GAAGAGGAGGAGTTTATGGTACATGTAGGGTTTGGAGGAACCGAGGACCT
CTCCAGCGTGTTTCGGAAGAAGATGTGGGTGCCTCGGCACGTGGGTGTGT
TTGTGGCTGGTTTGCCAACCACAAGAGAAGGGGGAAGGTTTCAACTAGAA
CAATTCGCGGGGAAATCAAAAGAGCAAACGGGGAGGGTGCTGGGGGCATT
GATCCATACAGGTGTGCTGCTGAGAGACAAGGAATGA

Synonyms

Publications